View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5856-Insertion-11 (Length: 390)
Name: NF5856-Insertion-11
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5856-Insertion-11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 390
Target Start/End: Complemental strand, 42224730 - 42224350
Alignment:
| Q |
9 |
aactcacccccctctaccatctctaaatgcactgtgatcaattattcttatacgaggacaataaatgttgaagttatgaaaaaattaaggaagcgctaaa |
108 |
Q |
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| T |
42224730 |
aactcacccccctctaccatctctaaatgcattgtgatcaattattcttatacgaggacaataaatgttgaagttatgaaaaaattaaggaagcactaaa |
42224631 |
T |
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| Q |
109 |
tattttatcatatttaagannnnnnnnattgatttgtgcctgtaatgccatgttggggcaagaattttctctcnnnnnnnnnctaggttaaagaagaata |
208 |
Q |
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| T |
42224630 |
tattttatcatatttaagattttttttattgatttgtgcctgtaatgccatgttggggcaagaattttctctc-ttttttttctaggttaaagaagaata |
42224532 |
T |
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| Q |
209 |
tggctcttgtatgctttgtgtacatttcccttgtttaattgaataattgtattgnnnnnnnnnnnnnnnntccaggccaacttttattgcgatatggaag |
308 |
Q |
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| T |
42224531 |
tggctcttgtatgctttgtgtacatttcccttgtttaattgaataattgtattgaaaataaaaataaaaatccaggccaacttttattgcgatatggaag |
42224432 |
T |
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| Q |
309 |
aaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactgtacggtctgc |
390 |
Q |
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| T |
42224431 |
aaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactatacggtctgc |
42224350 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 36675385 - 36675453
Alignment:
| Q |
281 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagc |
349 |
Q |
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| T |
36675385 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagc |
36675453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 36685467 - 36685535
Alignment:
| Q |
281 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagc |
349 |
Q |
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||||||||| ||| ||| |||||| ||||||||||| ||||| |||| |||||| | |||||||||||| |
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| T |
36685467 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagc |
36685535 |
T |
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