View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5856-Insertion-12 (Length: 240)

Name: NF5856-Insertion-12
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5856-Insertion-12
NF5856-Insertion-12
[»] chr6 (12 HSPs)
chr6 (9-133)||(9075174-9075298)
chr6 (138-240)||(9075237-9075339)
chr6 (48-131)||(9074073-9074156)
chr6 (35-80)||(9194420-9194465)
chr6 (136-191)||(9074079-9074134)
chr6 (48-113)||(30003249-30003314)
chr6 (35-127)||(33532432-33532524)
chr6 (41-131)||(1912443-1912533)
chr6 (170-212)||(5730118-5730160)
chr6 (28-93)||(19390965-19391030)
chr6 (51-96)||(24812534-24812579)
chr6 (47-95)||(3784911-3784959)
[»] chr7 (10 HSPs)
chr7 (49-127)||(48517386-48517464)
chr7 (41-133)||(2219461-2219552)
chr7 (28-125)||(18749198-18749297)
chr7 (49-129)||(23117298-23117378)
chr7 (41-126)||(24673366-24673451)
chr7 (140-193)||(31809136-31809189)
chr7 (164-212)||(2219448-2219496)
chr7 (136-192)||(24673366-24673422)
chr7 (169-213)||(27720473-27720517)
chr7 (35-131)||(32612398-32612494)
[»] chr1 (7 HSPs)
chr1 (28-95)||(6025943-6026010)
chr1 (139-213)||(12764631-12764706)
chr1 (34-120)||(8856780-8856866)
chr1 (139-193)||(46937627-46937681)
chr1 (47-92)||(17204675-17204720)
chr1 (141-192)||(3234585-3234636)
chr1 (28-128)||(24808370-24808470)
[»] chr8 (7 HSPs)
chr8 (149-213)||(11813980-11814044)
chr8 (46-95)||(16690945-16690994)
chr8 (28-96)||(45371070-45371138)
chr8 (27-129)||(42822605-42822707)
chr8 (143-191)||(4050512-4050560)
chr8 (35-95)||(21226953-21227013)
chr8 (46-126)||(41686218-41686298)
[»] chr5 (11 HSPs)
chr5 (51-134)||(5987329-5987412)
chr5 (41-91)||(22532590-22532640)
chr5 (41-118)||(4787946-4788023)
chr5 (28-89)||(5516022-5516083)
chr5 (33-129)||(6586544-6586640)
chr5 (148-192)||(42440170-42440214)
chr5 (72-126)||(9634890-9634944)
chr5 (149-215)||(13898736-13898802)
chr5 (57-131)||(42440145-42440219)
chr5 (167-212)||(29466272-29466317)
chr5 (136-181)||(34556526-34556571)
[»] chr4 (7 HSPs)
chr4 (35-94)||(34581607-34581666)
chr4 (29-90)||(4762529-4762590)
chr4 (46-118)||(4683769-4683841)
chr4 (53-91)||(3304270-3304308)
chr4 (36-90)||(13256204-13256258)
chr4 (46-87)||(682009-682050)
chr4 (46-127)||(42647417-42647498)
[»] chr3 (7 HSPs)
chr3 (41-128)||(24830171-24830258)
chr3 (41-83)||(8788959-8789001)
chr3 (46-91)||(43307604-43307649)
chr3 (51-96)||(43307667-43307712)
chr3 (14-91)||(50402630-50402707)
chr3 (46-119)||(54838621-54838694)
chr3 (56-88)||(402793-402825)
[»] chr2 (4 HSPs)
chr2 (145-192)||(17505001-17505048)
chr2 (35-96)||(36300410-36300474)
chr2 (35-72)||(24097778-24097815)
chr2 (168-213)||(29378606-29378651)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 9075174 - 9075298
Alignment:
Q  9 ctttcacaaatcactgattttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgt 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9075174 ctttcacaaatcactaattttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtataacggaatgt 9075273  T
Q  109 gaacaaaccgctgttttccgcgacc 133  Q
    ||||||||| |||||||||||||||    
T  9075274 gaacaaaccactgttttccgcgacc 9075298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 9075237 - 9075339
Alignment:
Q  138 tatagtggcactataacactgttgtataacggaatttgaacaaaccactgttttccacgacccgcgattgacaacatttatcaatcactatcttagagta 237  Q
    ||||| ||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||    
T  9075237 tatagcggcgctatagcactgttgtataacggaatgtgaacaaaccactgttttccgcgacccgtgattgacaacatgtaacaatcactatcttagagta 9075336  T
Q  238 ttt 240  Q
    |||    
T  9075337 ttt 9075339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 9074156 - 9074073
Alignment:
Q  48 tacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcga 131  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||| |||||||| | ||||||| |||||    
T  9074156 tacaaaatgttatcaaatagaggctatagcggcgctatagcactgttgtataatggaatttgaacaaaacactgtttttcgcga 9074073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 9194465 - 9194420
Alignment:
Q  35 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggc 80  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||    
T  9194465 atacggtatttagtacaaaatgttgtcaaatagtggttatagcggc 9194420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 9074134 - 9074079
Alignment:
Q  136 gctatagtggcactataacactgttgtataacggaatttgaacaaaccactgtttt 191  Q
    ||||||| ||| ||||| ||||||||||||| |||||||||||||| |||||||||    
T  9074134 gctatagcggcgctatagcactgttgtataatggaatttgaacaaaacactgtttt 9074079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 30003314 - 30003249
Alignment:
Q  48 tacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaaca 113  Q
    ||||||||||||||||||||||| || |||||| |||||||| |||||| || | |||| ||||||    
T  30003314 tacaaaatgttgtcaaatagaggctaaagcggctctatagcattgttgtatagcagaatttgaaca 30003249  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 33532524 - 33532432
Alignment:
Q  35 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttcc 127  Q
    ||||| |||| |||||| |||||||||||| ||  | |||||  |||||||||||||||||  || | |||| ||||||||||||| ||||||    
T  33532524 atacgctatttagtacagaatgttgtcaaacagcagctatagttgcgctatagcactgttgagtagcagaatttgaacaaaccgctattttcc 33532432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 1912533 - 1912443
Alignment:
Q  41 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcga 131  Q
    |||| |||||||| | ||||||||||| |  ||||| | ||||||||||| ||||  || |||||| |||||||||| || ||||||||||    
T  1912533 tatttagtacaaattattgtcaaatagcgactatagtgacgctatagcaccgttgcatagcggaatttgaacaaacctctattttccgcga 1912443  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 5730160 - 5730118
Alignment:
Q  170 aatttgaacaaaccactgttttccacgacccgcgattgacaac 212  Q
    ||||||||||||||||| |||||||||| || |||||||||||    
T  5730160 aatttgaacaaaccactattttccacgaaccacgattgacaac 5730118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 19390965 - 19391030
Alignment:
Q  28 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgt 93  Q
    |||| ||||| | |||| |||||||| | |||||||||||  ||||||| ||||||||||||||||    
T  19390965 ttccacaataagctatttagtacaaagtattgtcaaatagcagttatagtggcgctatagcactgt 19391030  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 24812579 - 24812534
Alignment:
Q  51 aaaatgttgtcaaatagaggttatagcggcgctatagcactgttgt 96  Q
    ||||| ||| ||||||||| |||||||||||||||||| |||||||    
T  24812579 aaaatattgccaaatagagattatagcggcgctatagcgctgttgt 24812534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 3784959 - 3784911
Alignment:
Q  47 gtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttg 95  Q
    ||||||||  |||||||| ||||| |||||||||||| |||||||||||    
T  3784959 gtacaaaacattgtcaaacagaggctatagcggcgctctagcactgttg 3784911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 48517464 - 48517386
Alignment:
Q  49 acaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttcc 127  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||| || || ||| ||||||||||||| ||||||    
T  48517464 acaaaatgttttcaaatagtggttatagcggcgctatagcaatgttgtatagcgaaatttgaacaaaccgctattttcc 48517386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 2219552 - 2219461
Alignment:
Q  41 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcgacc 133  Q
    |||| |||||||||| ||||||||||| ||||||| ||| ||||||||| |||||  |||| |||| |||||||| | || |||||| |||||    
T  2219552 tatttagtacaaaatattgtcaaatagcggttataacggtgctatagcattgttg-gtaacagaatttgaacaaatcactattttccacgacc 2219461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 18749297 - 18749198
Alignment:
Q  28 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggc--gctatagcactgttgtctaacggaatgtgaacaaaccgctgtttt 125  Q
    |||||| ||||| |||| |||||| |||||||||||| || || |||||| ||  |||||||||||||||| ||||  ||| ||||||||| ||| ||||    
T  18749297 ttccgctatacgatatttagtacagaatgttgtcaaacagcggctatagcagcacgctatagcactgttgtgtaacataatttgaacaaactgctatttt 18749198  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 23117378 - 23117298
Alignment:
Q  49 acaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgc 129  Q
    |||||||||||| |||||| || |||||| |||||||||||||||    || |||||| |||||||||| || ||||||||    
T  23117378 acaaaatgttgtgaaatagtgggtatagcagcgctatagcactgtcacgtagcggaatttgaacaaaccactattttccgc 23117298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 24673451 - 24673366
Alignment:
Q  41 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttc 126  Q
    |||| ||||||||||||||||||||||  | ||||||||| | ||| ||||||||  || | |||| |||||||||| || |||||    
T  24673451 tattcagtacaaaatgttgtcaaatagccgctatagcggcaccatatcactgttgcatagctgaatttgaacaaaccactattttc 24673366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 31809136 - 31809189
Alignment:
Q  140 tagtggcactataacactgttgtataacggaatttgaacaaaccactgttttcc 193  Q
    ||||||||||||| ||||||||  || |||||||||| |||||| |||||||||    
T  31809136 tagtggcactatagcactgttgcgtagcggaatttgatcaaaccgctgttttcc 31809189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 2219496 - 2219448
Alignment:
Q  164 taacggaatttgaacaaaccactgttttccacgacccgcgattgacaac 212  Q
    |||| ||||||||||||| |||| |||||||||||| || |||||||||    
T  2219496 taacagaatttgaacaaatcactattttccacgacctgcaattgacaac 2219448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 24673422 - 24673366
Alignment:
Q  136 gctatagtggcactataacactgttgtataacggaatttgaacaaaccactgttttc 192  Q
    ||||||| ||||| ||| |||||||| ||| | |||||||||||||||||| |||||    
T  24673422 gctatagcggcaccatatcactgttgcatagctgaatttgaacaaaccactattttc 24673366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 27720473 - 27720517
Alignment:
Q  169 gaatttgaacaaaccactgttttccacgacccgcgattgacaaca 213  Q
    |||||||||||||||||| ||||||| || |||| ||||||||||    
T  27720473 gaatttgaacaaaccactattttccatgatccgcaattgacaaca 27720517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 32612494 - 32612398
Alignment:
Q  35 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcga 131  Q
    ||||| |||| |||||||||| |||| || ||  || ||| | ||||||||||||||||||| || |||||| |||  |||||||| ||||| ||||    
T  32612494 atacgctatttagtacaaaatattgtgaagtaccggctatggtggcgctatagcactgttgtgtagcggaatttgactaaaccgctattttctgcga 32612398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 6026010 - 6025943
Alignment:
Q  28 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttg 95  Q
    |||||| ||| | |||| |||||||||||||||||||||| || |||||| |||||||||||||||||    
T  6026010 ttccgcgatatgctatttagtacaaaatgttgtcaaatagtggctatagcagcgctatagcactgttg 6025943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 12764706 - 12764631
Alignment:
Q  139 atagtggcactataacactgttgtataac-ggaatttgaacaaaccactgttttccacgacccgcgattgacaaca 213  Q
    |||||||||||||||||||| || ||| | ||||||||||||||||||| || | || || |||||||||||||||    
T  12764706 atagtggcactataacactggtgcatagctggaatttgaacaaaccactattatacatgatccgcgattgacaaca 12764631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 8856780 - 8856866
Alignment:
Q  34 aatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgct 120  Q
    |||||| |||| |||||| | |||||||||||||| | ||||||||| ||||||||||||  | ||  ||||| |||||||||||||    
T  8856780 aatacgctattcagtacagagtgttgtcaaatagaagctatagcggcactatagcactgtattgtagtggaatttgaacaaaccgct 8856866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 46937627 - 46937681
Alignment:
Q  139 atagtggcactataacactgttgtataacggaatttgaacaaaccactgttttcc 193  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||| || ||||||    
T  46937627 atagtggcgctataacactgttgcatagcggaatttgaacaaaccgctattttcc 46937681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 17204720 - 17204675
Alignment:
Q  47 gtacaaaatgttgtcaaatagaggttatagcggcgctatagcactg 92  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||    
T  17204720 gtacaaaatgttgtcaaatagtggttatagcggcgcaatggcactg 17204675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 3234585 - 3234636
Alignment:
Q  141 agtggcactataacactgttgtataacggaatttgaacaaaccactgttttc 192  Q
    ||||||||||||||| ||| || || ||||||||||||||| ||||||||||    
T  3234585 agtggcactataacattgtagtgtagcggaatttgaacaaagcactgttttc 3234636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 24808370 - 24808470
Alignment:
Q  28 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttcc 127  Q
    |||||| ||| |||||| ||| |||| ||||||||||||  ||| ||||| | |||| |||||||| |  || | |||| |||||||||| |||||||||    
T  24808370 ttccgcgatatggtatttagttcaaagtgttgtcaaataatggtcatagcagtgctaaagcactgtagcatagcagaatttgaacaaaccactgttttcc 24808469  T
Q  128 g 128  Q
    |    
T  24808470 g 24808470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 11813980 - 11814044
Alignment:
Q  149 tataacactgttgtataacggaatttgaacaaaccactgttttccacgacccgcgattgacaaca 213  Q
    |||||||||||  | ||||||||||||||||||||||| |||||||| |  ||||||||||||||    
T  11813980 tataacactgtaatgtaacggaatttgaacaaaccactattttccactaatcgcgattgacaaca 11814044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 16690994 - 16690945
Alignment:
Q  46 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttg 95  Q
    ||||||||||||| ||||||||||| |||| |||| ||||||||||||||    
T  16690994 agtacaaaatgttttcaaatagagggtataacggcactatagcactgttg 16690945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 45371138 - 45371070
Alignment:
Q  28 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgt 96  Q
    |||||||||| | |||| ||||||||||||||||||||||    |||| |||| |||||||||||||||    
T  45371138 ttccgcaatatgctatttagtacaaaatgttgtcaaatagctactataacggcactatagcactgttgt 45371070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 42822605 - 42822707
Alignment:
Q  27 tttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttc 126  Q
    |||||||||| |  |||| || |||||||  ||| |||||| || ||||||||||||||||||||||||  ||  ||||| ||||||||| | | |||||    
T  42822605 tttccgcaatccactatttaggacaaaatactgtgaaatagtggctatagcggcgctatagcactgttgcatagtggaatttgaacaaactgatattttc 42822704  T
Q  127 cgc 129  Q
    |||    
T  42822705 cgc 42822707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 4050512 - 4050560
Alignment:
Q  143 tggcactataacactgttgtataacggaatttgaacaaaccactgtttt 191  Q
    |||| ||||| ||||||||| |||| |||||||||||||||||| ||||    
T  4050512 tggcgctatatcactgttgtgtaacagaatttgaacaaaccactatttt 4050560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 21226953 - 21227013
Alignment:
Q  35 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttg 95  Q
    ||||| |||| ||||||||||||||||||||||  | |||||  |||||||| ||||||||    
T  21226953 atacgctattcagtacaaaatgttgtcaaatagctgctatagtagcgctatatcactgttg 21227013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 41686298 - 41686218
Alignment:
Q  46 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttc 126  Q
    |||||||||| |||| || |||  | |||||||||| |||||||||||||  || || ||| ||||||||||||| |||||    
T  41686298 agtacaaaatattgtgaagtagctgctatagcggcgttatagcactgttgcatagcgaaatttgaacaaaccgctcttttc 41686218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 5987329 - 5987412
Alignment:
Q  51 aaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcgaccg 134  Q
    ||||||||||||| ||| || |||||||||||||||||||| |||  ||| ||||| ||| ||||| ||| ||||| |||||||    
T  5987329 aaaatgttgtcaagtagtggctatagcggcgctatagcactattgcataatggaatttgatcaaactgctattttctgcgaccg 5987412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 22532590 - 22532640
Alignment:
Q  41 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcact 91  Q
    ||||||||||||||| ||||| |||||||||||||| ||| ||||||||||    
T  22532590 tattaagtacaaaatattgtcgaatagaggttatagtggcactatagcact 22532640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 4787946 - 4788023
Alignment:
Q  41 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccg 118  Q
    |||| |||||||||||||||||||||| || || |  ||| ||||||||||||| | || |||||| |||||||||||    
T  4787946 tatttagtacaaaatgttgtcaaatagtggctacacaggcactatagcactgttttatatcggaatttgaacaaaccg 4788023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 5516022 - 5516083
Alignment:
Q  28 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagca 89  Q
    |||||||||||  ||||||||||| |||| ||||||||||||| |||||| || ||||||||    
T  5516022 ttccgcaatacactattaagtacacaatggtgtcaaatagaggctatagcagcactatagca 5516083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 6586544 - 6586640
Alignment:
Q  33 caatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgc 129  Q
    ||||| |||||| ||| |||||| |||||||| || |||||||| | |||||||| ||| |||  ||  ||||| ||||||||||||| ||||||||    
T  6586544 caatatggtatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgc 6586640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 42440170 - 42440214
Alignment:
Q  148 ctataacactgttgtataacggaatttgaacaaaccactgttttc 192  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||    
T  42440170 ctataacactgtagcatagcggaatttgaacaaaccactgttttc 42440214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 9634944 - 9634890
Alignment:
Q  72 tatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttc 126  Q
    |||||||||||||||||| |||||  || |||||| ||||||||||||| |||||    
T  9634944 tatagcggcgctatagcaatgttgcgtagcggaatttgaacaaaccgctattttc 9634890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 13898736 - 13898802
Alignment:
Q  149 tataacactgttgtataacggaatttgaacaaaccactgttttccacgacccgcgattgacaacatt 215  Q
    |||| ||||||||| || |||||||| ||||| ||||| |||||||| | ||| |||||||||||||    
T  13898736 tatagcactgttgtgtagcggaattttaacaacccactattttccactatccgtgattgacaacatt 13898802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 42440145 - 42440219
Alignment:
Q  57 ttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcga 131  Q
    |||||||||||||| |||||| | |||||| |||||| |  || |||||| |||||||||| |||||||| ||||    
T  42440145 ttgtcaaatagaggctatagcagtgctataacactgtagcatagcggaatttgaacaaaccactgttttctgcga 42440219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 29466272 - 29466317
Alignment:
Q  167 cggaatttgaacaaaccactgttttccacgacccgcgattgacaac 212  Q
    |||||||||||||||||| | ||||||| || ||||||||||||||    
T  29466272 cggaatttgaacaaaccattattttccaggatccgcgattgacaac 29466317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 34556526 - 34556571
Alignment:
Q  136 gctatagtggcactataacactgttgtataacggaatttgaacaaa 181  Q
    ||||||||||||||||| |||| ||| |||| ||||||||||||||    
T  34556526 gctatagtggcactatagcactattgcataatggaatttgaacaaa 34556571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 34581607 - 34581666
Alignment:
Q  35 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgtt 94  Q
    ||||| |||| |||||||||||||||||||||| || |||||  ||||||||||||||||    
T  34581607 atacgctatttagtacaaaatgttgtcaaatagcggctatagtagcgctatagcactgtt 34581666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 4762590 - 4762529
Alignment:
Q  29 tccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcac 90  Q
    ||||||||||| |||| ||||||||||||||||||||||  ||||||| ||| | |||||||    
T  4762590 tccgcaatacgctatttagtacaaaatgttgtcaaatagccgttatagtggcaccatagcac 4762529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 4683841 - 4683769
Alignment:
Q  46 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccg 118  Q
    |||||||||| ||||||||||| || |||| |||||||||||| | ||||| |||| |||| | |||||||||    
T  4683841 agtacaaaatattgtcaaataggggctatatcggcgctatagcgcagttgtgtaacagaattttaacaaaccg 4683769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 3304308 - 3304270
Alignment:
Q  53 aatgttgtcaaatagaggttatagcggcgctatagcact 91  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  3304308 aatgttgtcaaatagcagttatagcggcgctatagcact 3304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 13256204 - 13256258
Alignment:
Q  36 tacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcac 90  Q
    |||| |||| |||||||||||||| ||||||| | ||||||||||| ||||||||    
T  13256204 tacgctattcagtacaaaatgttgccaaatagtgattatagcggcgttatagcac 13256258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 682009 - 682050
Alignment:
Q  46 agtacaaaatgttgtcaaatagaggttatagcggcgctatag 87  Q
    ||||||| |||||||||||||||||||||||| | |||||||    
T  682009 agtacaacatgttgtcaaatagaggttatagcagtgctatag 682050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 42647417 - 42647498
Alignment:
Q  46 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttcc 127  Q
    |||||||||| |||||||| ||  ||||||||||| ||| |||  |||||  || |||||| ||||||||||||| ||||||    
T  42647417 agtacaaaatattgtcaaacagtagttatagcggcactagagctttgttgcgtagcggaatttgaacaaaccgctattttcc 42647498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 24830171 - 24830258
Alignment:
Q  41 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccg 128  Q
    |||| |||| |||||||||||||||| ||| |||| ||||||||||||||| |||| || |  ||| ||||||||| | |||||||||    
T  24830171 tatttagtataaaatgttgtcaaataaaggctatatcggcgctatagcactcttgtgtagcaaaatttgaacaaactgttgttttccg 24830258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 8789001 - 8788959
Alignment:
Q  41 tattaagtacaaaatgttgtcaaatagaggttatagcggcgct 83  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||    
T  8789001 tattaaatacaaaatgttgtcaaatagaggctatagtggcgct 8788959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 43307649 - 43307604
Alignment:
Q  46 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcact 91  Q
    ||||||||||||||| | |||| |||||||| ||||||||||||||    
T  43307649 agtacaaaatgttgttagatagtggttatagtggcgctatagcact 43307604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 43307712 - 43307667
Alignment:
Q  51 aaaatgttgtcaaatagaggttatagcggcgctatagcactgttgt 96  Q
    |||||||||||| |||| |||||||| |||||||||||||| ||||    
T  43307712 aaaatgttgtcagatagcggttatagtggcgctatagcactattgt 43307667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 50402707 - 50402630
Alignment:
Q  14 acaaatcactgattttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcact 91  Q
    ||||||||||  | |||||||||| | |||| |||| ||| |||||||||||||  | |||||| |||||||||||||    
T  50402707 acaaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaatagcagctatagctgcgctatagcact 50402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 54838621 - 54838694
Alignment:
Q  46 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgc 119  Q
    |||||||||||||||||||||| || || |  | ||||||||||||||||   | |||||| ||||||||||||    
T  54838621 agtacaaaatgttgtcaaatagtggctaaaatgccgctatagcactgttgcacagcggaatttgaacaaaccgc 54838694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 402793 - 402825
Alignment:
Q  56 gttgtcaaatagaggttatagcggcgctatagc 88  Q
    ||||||||||||| |||||||||||||||||||    
T  402793 gttgtcaaatagaagttatagcggcgctatagc 402825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 17505001 - 17505048
Alignment:
Q  145 gcactataacactgttgtataacggaatttgaacaaaccactgttttc 192  Q
    |||||||||||||||||| || |||||||||||||||| ||| |||||    
T  17505001 gcactataacactgttgtgtagcggaatttgaacaaacaactattttc 17505048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 36300410 - 36300474
Alignment:
Q  35 atacggtattaagtacaaaatgttgtcaaatagaggttata---gcggcgctatagcactgttgt 96  Q
    ||||| |||| |||||||||||||||||||||| || ||||   |||||||||||||||| ||||    
T  36300410 atacgctatttagtacaaaatgttgtcaaatagtggatatagtggcggcgctatagcactattgt 36300474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 24097778 - 24097815
Alignment:
Q  35 atacggtattaagtacaaaatgttgtcaaatagaggtt 72  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  24097778 atacggtatttagtacaaaatgttgtcaaatagcggtt 24097815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 29378606 - 29378651
Alignment:
Q  168 ggaatttgaacaaaccactgttttccacgacccgcgattgacaaca 213  Q
    |||||||||||||||| || ||| |||||| |||||||||||||||    
T  29378606 ggaatttgaacaaaccgctatttcccacgatccgcgattgacaaca 29378651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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