View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5856-Insertion-2 (Length: 940)
Name: NF5856-Insertion-2
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5856-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 424
Target Start/End: Complemental strand, 5638884 - 5638469
Alignment:
| Q |
9 |
taaatttcctttgaaacttgtttcatgagagcattaattgagtggtgtttaacactaattgaaatataacagtaatccagtaaaattaattagaattttc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638884 |
taaatttcctttgaaacttgtttcatgagagcattaattgagtggtgtttaacactaattgaaatataacagtaatccagtaaaattaattagaattttc |
5638785 |
T |
|
| Q |
109 |
ttatatattatggaccacaaaccatgactannnnnnnnacttaaatttgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctct |
208 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638784 |
ttatatattatggaccacaaaccatgactattttttttacttaaatttgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctct |
5638685 |
T |
|
| Q |
209 |
tttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638684 |
tttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgc |
5638585 |
T |
|
| Q |
309 |
agaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638584 |
agaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtac |
5638485 |
T |
|
| Q |
409 |
aatttaaaatttattt |
424 |
Q |
| |
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|||||||||||||||| |
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| T |
5638484 |
aatttaaaatttattt |
5638469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 479 - 940
Target Start/End: Complemental strand, 5622206 - 5621743
Alignment:
| Q |
479 |
acatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatttt |
578 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5622206 |
acatactggaactccatagtgttcagtgagacctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacaatatttt |
5622107 |
T |
|
| Q |
579 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaaaaatgtcgaggaaacaattgtcaatagttactgatcaagcaatttta |
678 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5622106 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaaaaatgtcgaggaaacaattgtcaatagttactgatcaagcaatttta |
5622007 |
T |
|
| Q |
679 |
gtttgcatgcagcaggtaaggcatattatgagcataatagatgtcgttagtatgacaactacagaaaaaataactattacaacttaatggttgagaaaac |
778 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5622006 |
gtttgcatgcagcaggtaaggcatattatgagcataatagatgttgttagtatgacaactacagaaaaaataactattacaacttaatggttgagaaaac |
5621907 |
T |
|
| Q |
779 |
ca-ggcaagtagcagattagtaatacttttttaaggaacaacatcgcaatagacaccaatataacagcaacaccaaacagactc-aagtgtttactacaa |
876 |
Q |
| |
|
|| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| |
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| T |
5621906 |
cagggcaagtagcagattagcaatactcttttaaggaacaacatcgcaatagacaccaatataacagcaacgcc-aacagactcaaagtgtttactacaa |
5621808 |
T |
|
| Q |
877 |
tccttcataaaatacatattc-aatttcattttct-attactgtaatatctctgcagaaatagtag |
940 |
Q |
| |
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|||||||| |||||||||||| |||||||||| || |||||||||||||||| ||||||||||||| |
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|
| T |
5621807 |
tccttcat-aaatacatattcaaatttcatttgctaattactgtaatatctcagcagaaatagtag |
5621743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 445 - 486
Target Start/End: Complemental strand, 5638448 - 5638407
Alignment:
| Q |
445 |
tatacacacccacgcccaaatagaactttttagtacatactg |
486 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5638448 |
tatacacacccacgcccaaatagaacttttcagtacatactg |
5638407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 477 - 631
Target Start/End: Original strand, 30634587 - 30634741
Alignment:
| Q |
477 |
gtacatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatt |
576 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30634587 |
gtacatactggaactccgtagtgttcagtgagacctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaccgatatt |
30634686 |
T |
|
| Q |
577 |
tttccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaa |
631 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
30634687 |
tttccttcaatttaatgatatcatctaagggtgctatttgaccagaattctgaaa |
30634741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 216 - 389
Target Start/End: Original strand, 30634326 - 30634501
Alignment:
| Q |
216 |
tttcagtatacatggaaatccaagaaggtt-atgaa-cagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaat |
313 |
Q |
| |
|
|||||||| || |||||||| ||| |||| ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
30634326 |
tttcagtacacttggaaatctaagttggtttatgaatcagtattacaaatgacactaccatacctggtgatctataactcttgcacttccggtgcagaat |
30634425 |
T |
|
| Q |
314 |
cctccttctgtggccagtgcatgtcccatagcagcagttataagatctaacttatcaacctgcagcacacaaccac |
389 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
30634426 |
cctccttctgtggccaatgcatgtcccatagcagcagttataagatctaacttctcaacctgcagcacacgaccac |
30634501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 477 - 631
Target Start/End: Original strand, 21423373 - 21423527
Alignment:
| Q |
477 |
gtacatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatt |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
21423373 |
gtacatactggaactccatagtgttcagtgagacctcttccagaacttccaagcacgccaaatgagttgctctcatccagtaaaatacgaaaccgatatt |
21423472 |
T |
|
| Q |
577 |
tttccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaa |
631 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
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|
| T |
21423473 |
tttccttcaatttaatgatatcatctaagggtgctatttgaccagaattctgaaa |
21423527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 262 - 383
Target Start/End: Original strand, 21423160 - 21423281
Alignment:
| Q |
262 |
atgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatct |
361 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21423160 |
atgacactaccatacctggtgatctataactcttgcacttccggtgcagaatcctccttctgtggccaatgcatgtcccatagcagcagttataagatct |
21423259 |
T |
|
| Q |
362 |
aacttatcaacctgcagcacac |
383 |
Q |
| |
|
||||| |||||||||||||||| |
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|
| T |
21423260 |
aacttctcaacctgcagcacac |
21423281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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