View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5856-Insertion-3 (Length: 885)

Name: NF5856-Insertion-3
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5856-Insertion-3
NF5856-Insertion-3
[»] chr2 (27 HSPs)
chr2 (262-581)||(44934918-44935235)
chr2 (9-232)||(44935284-44935502)
chr2 (730-885)||(44760086-44760241)
chr2 (731-885)||(6404109-6404263)
chr2 (730-885)||(15911769-15911927)
chr2 (741-882)||(13278690-13278831)
chr2 (730-885)||(17308951-17309108)
chr2 (732-885)||(30490668-30490824)
chr2 (730-885)||(38703573-38703730)
chr2 (730-882)||(17137691-17137850)
chr2 (741-882)||(31994077-31994218)
chr2 (741-882)||(1209930-1210072)
chr2 (732-845)||(45117111-45117224)
chr2 (741-882)||(7942742-7942883)
chr2 (745-882)||(18137585-18137722)
chr2 (796-885)||(38207478-38207567)
chr2 (778-885)||(21485295-21485402)
chr2 (775-864)||(1114722-1114811)
chr2 (731-800)||(38208410-38208482)
chr2 (790-884)||(33945922-33946016)
chr2 (790-884)||(37127941-37128035)
chr2 (790-883)||(21649729-21649822)
chr2 (138-219)||(44925676-44925758)
chr2 (347-438)||(44925238-44925329)
chr2 (664-703)||(44929408-44929447)
chr2 (801-885)||(16739457-16739538)
chr2 (616-650)||(44929727-44929761)
[»] chr7 (20 HSPs)
chr7 (730-885)||(35794472-35794627)
chr7 (732-882)||(14816644-14816794)
chr7 (732-882)||(15263640-15263790)
chr7 (732-885)||(46254859-46255015)
chr7 (729-882)||(43458183-43458335)
chr7 (730-885)||(34847861-34848019)
chr7 (732-882)||(25529097-25529247)
chr7 (730-885)||(33950924-33951082)
chr7 (730-885)||(36312068-36312225)
chr7 (758-873)||(1377355-1377470)
chr7 (778-885)||(1852143-1852250)
chr7 (795-882)||(42321186-42321273)
chr7 (805-882)||(44863013-44863090)
chr7 (778-885)||(19646939-19647046)
chr7 (790-884)||(31326669-31326763)
chr7 (775-878)||(26188205-26188308)
chr7 (730-773)||(44866155-44866198)
chr7 (790-884)||(1906577-1906671)
chr7 (802-884)||(3601033-3601115)
chr7 (811-865)||(35585120-35585174)
[»] chr3 (26 HSPs)
chr3 (730-885)||(47646910-47647068)
chr3 (733-885)||(47013707-47013859)
chr3 (741-882)||(6936464-6936605)
chr3 (741-882)||(32529796-32529937)
chr3 (730-885)||(10509207-10509365)
chr3 (730-885)||(36402696-36402854)
chr3 (729-882)||(40937214-40937367)
chr3 (730-882)||(149323-149475)
chr3 (738-882)||(227626-227770)
chr3 (730-882)||(26502177-26502332)
chr3 (741-882)||(41193717-41193858)
chr3 (730-885)||(39586567-39586722)
chr3 (741-882)||(39353294-39353435)
chr3 (741-882)||(49166110-49166250)
chr3 (746-882)||(31765207-31765343)
chr3 (775-885)||(41174803-41174913)
chr3 (758-885)||(33843510-33843637)
chr3 (802-885)||(42899211-42899294)
chr3 (802-885)||(51328989-51329072)
chr3 (802-884)||(25214595-25214677)
chr3 (730-773)||(41182006-41182049)
chr3 (805-865)||(44207641-44207701)
chr3 (811-867)||(53393957-53394013)
chr3 (778-865)||(21979926-21980013)
chr3 (778-865)||(22002357-22002444)
chr3 (824-885)||(10494800-10494861)
[»] chr4 (34 HSPs)
chr4 (730-885)||(40728020-40728175)
chr4 (730-885)||(45229064-45229219)
chr4 (731-885)||(28780765-28780919)
chr4 (730-882)||(35158716-35158868)
chr4 (732-882)||(33281083-33281233)
chr4 (730-882)||(31093103-31093255)
chr4 (730-885)||(52416919-52417077)
chr4 (730-885)||(16023867-16024022)
chr4 (730-882)||(1602781-1602932)
chr4 (730-882)||(45462248-45462400)
chr4 (741-882)||(2013733-2013874)
chr4 (741-882)||(4189874-4190015)
chr4 (741-882)||(38551270-38551411)
chr4 (730-882)||(49374315-49374466)
chr4 (730-882)||(51538642-51538794)
chr4 (730-882)||(30003608-30003762)
chr4 (741-882)||(4048130-4048271)
chr4 (741-882)||(168540-168681)
chr4 (741-882)||(6963451-6963592)
chr4 (757-882)||(16451927-16452052)
chr4 (741-882)||(15542841-15542981)
chr4 (741-882)||(45924595-45924736)
chr4 (733-885)||(55136659-55136814)
chr4 (733-885)||(9036089-9036243)
chr4 (730-885)||(38218251-38218409)
chr4 (730-885)||(43841863-43842021)
chr4 (730-859)||(56463635-56463767)
chr4 (741-879)||(28310890-28311029)
chr4 (741-882)||(35319896-35320037)
chr4 (802-885)||(39807338-39807421)
chr4 (778-884)||(34953601-34953707)
chr4 (802-884)||(40602736-40602818)
chr4 (778-866)||(20516682-20516770)
chr4 (802-884)||(56084107-56084189)
[»] chr1 (29 HSPs)
chr1 (730-885)||(42882579-42882734)
chr1 (730-883)||(37952296-37952449)
chr1 (741-882)||(41091164-41091305)
chr1 (741-882)||(50261992-50262133)
chr1 (730-882)||(44496482-44496634)
chr1 (741-882)||(38860673-38860814)
chr1 (741-882)||(41086396-41086537)
chr1 (741-882)||(41900288-41900429)
chr1 (729-885)||(29961391-29961547)
chr1 (731-885)||(12700526-12700683)
chr1 (741-882)||(12528442-12528583)
chr1 (730-885)||(14587326-14587487)
chr1 (731-885)||(33801357-33801514)
chr1 (741-882)||(11952421-11952562)
chr1 (741-882)||(49851705-49851846)
chr1 (743-880)||(52632362-52632499)
chr1 (730-885)||(3517564-3517719)
chr1 (757-882)||(27216795-27216920)
chr1 (741-882)||(23984039-23984177)
chr1 (733-882)||(41723525-41723676)
chr1 (791-885)||(44757581-44757675)
chr1 (733-799)||(48964920-48964986)
chr1 (802-884)||(34549849-34549931)
chr1 (730-777)||(22858800-22858847)
chr1 (835-885)||(22858751-22858801)
chr1 (825-885)||(48964984-48965044)
chr1 (778-837)||(29913869-29913928)
chr1 (808-867)||(30518205-30518264)
chr1 (811-865)||(22334962-22335016)
[»] chr8 (21 HSPs)
chr8 (730-882)||(8239976-8240128)
chr8 (730-882)||(39318584-39318736)
chr8 (730-882)||(35684004-35684156)
chr8 (730-882)||(40105238-40105390)
chr8 (741-882)||(43098545-43098686)
chr8 (741-882)||(6347292-6347433)
chr8 (729-882)||(11076225-11076378)
chr8 (741-882)||(37098330-37098471)
chr8 (730-885)||(39260278-39260436)
chr8 (741-882)||(32337807-32337948)
chr8 (741-872)||(20091867-20091998)
chr8 (741-882)||(31701047-31701185)
chr8 (741-882)||(23144107-23144249)
chr8 (741-882)||(627371-627512)
chr8 (758-882)||(586428-586552)
chr8 (775-885)||(32947073-32947183)
chr8 (730-773)||(42131889-42131932)
chr8 (781-880)||(28284449-28284548)
chr8 (741-791)||(13546259-13546309)
chr8 (741-791)||(13678164-13678214)
chr8 (804-885)||(11457019-11457100)
[»] chr5 (22 HSPs)
chr5 (730-882)||(27114301-27114453)
chr5 (730-885)||(8734688-8734842)
chr5 (733-882)||(37012821-37012970)
chr5 (729-885)||(13822057-13822216)
chr5 (741-882)||(37030261-37030402)
chr5 (730-885)||(8197402-8197560)
chr5 (730-885)||(12785148-12785306)
chr5 (733-885)||(18808975-18809130)
chr5 (730-882)||(3556618-3556770)
chr5 (730-885)||(12723665-12723823)
chr5 (741-882)||(26279031-26279172)
chr5 (741-882)||(37883421-37883562)
chr5 (730-885)||(38679438-38679596)
chr5 (741-882)||(25977135-25977272)
chr5 (756-882)||(9715327-9715453)
chr5 (741-882)||(11719938-11720080)
chr5 (732-882)||(16513581-16513733)
chr5 (730-832)||(8299208-8299313)
chr5 (817-885)||(15858812-15858880)
chr5 (795-884)||(23252469-23252558)
chr5 (779-885)||(27495155-27495261)
chr5 (829-882)||(2606076-2606129)
[»] chr6 (9 HSPs)
chr6 (742-882)||(31318531-31318671)
chr6 (730-885)||(31722857-31723015)
chr6 (732-882)||(31271346-31271496)
chr6 (730-879)||(9304942-9305091)
chr6 (733-885)||(439025-439180)
chr6 (730-882)||(16395312-16395467)
chr6 (732-882)||(303751-303904)
chr6 (758-885)||(20818526-20818653)
chr6 (790-884)||(17519848-17519942)
[»] scaffold1301 (1 HSPs)
scaffold1301 (730-880)||(1654-1804)
[»] scaffold0054 (1 HSPs)
scaffold0054 (786-885)||(19067-19166)
[»] scaffold0160 (1 HSPs)
scaffold0160 (802-884)||(17301-17383)
[»] scaffold0048 (1 HSPs)
scaffold0048 (802-884)||(51836-51916)
[»] scaffold0210 (1 HSPs)
scaffold0210 (790-885)||(8159-8254)
[»] scaffold0001 (1 HSPs)
scaffold0001 (778-884)||(427220-427326)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 262 - 581
Target Start/End: Complemental strand, 44935235 - 44934918
Alignment:
Q  262 aagggcaactctaggctaaaagtaggagagaatcaattaaacaaagactggccatcattggaagagaagactaaaaacggtccacgtcgtactgacaaca 361  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  44935235 aagggcaactctgggctaaaagtaggagagaatcaattaaacaaagactggccatcattggaagagaagactaaaatcggtccaggtcgtactgacaaca 44935136  T
Q  362 ttccattttggattgaacaatggaaaaaccatggcacatgctcagtgtccattttggatcaggttcaataattttctttggtattgaaaatgtacaatac 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44935135 ttccattttggattgaacaatggaaaaaccatggcacatgctcagtgtccattttggatcaggttcaatacttttctttggtattgaaaatgtacaatac 44935036  T
Q  462 cattaacgtaagaaatatgcttcaaagggagaatgtcattcccggtggaactcatgtatgtagctaaagaagtctattctagagctatacaaaaccaaat 561  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  44935035 cattaacgtaagaaatatccttcaaagggagaatgtcattcccggtggaa--cctgtatgtagctaaagaagtctattctagagctatacaaaaccaaat 44934938  T
Q  562 gaaattcaagccacagattc 581  Q
    ||||||||||||||||||||    
T  44934937 gaaattcaagccacagattc 44934918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 44935502 - 44935284
Alignment:
Q  9 gttgttgggttgcatgctcactctctaattgcaacttaactgttgctaacaacatttcttcccgttcatccaatttaacctcaagaagaagcaagttaag 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44935502 gttgttgggttgcatgctcactctctaattgcaacttaacagttgctaacaacatttcttcccgttcatccaatttaacctcaagaagaagcaagttaag 44935403  T
Q  109 gtctccaccgcctcctcaaccatcaccatcaccatcaccaccacctccagctgttccatttgatcattttttgct-ggtctatcgtggcctcccacgttt 207  Q
    |||| ||||||||||||||||||||||||      |||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||    
T  44935402 gtcttcaccgcctcctcaaccatcaccat------cacctccacctccagctgttccatttgatcattttttgctagttctatcgttgcctcccacgttt 44935309  T
Q  208 tgtaaggaattaaatctagttataa 232  Q
    ||||||||||||||| |||||||||    
T  44935308 tgtaaggaattaaatttagttataa 44935284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 44760241 - 44760086
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44760241 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 44760142  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  44760141 ataagcttccatcttcaagatataccttcattattcacatcacctcttttcttaca 44760086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 731 - 885
Target Start/End: Complemental strand, 6404263 - 6404109
Alignment:
Q  731 ggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaa 830  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  6404263 ggaaagatttagagccattaatgcgggtttggacggttacaaccactaacacgttttcgttgaccgtattaatgacctaggacttgttttaggctataaa 6404164  T
Q  831 taagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    || |||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  6404163 taggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttaca 6404109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 15911927 - 15911769
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  15911927 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgacctaggacttgttttaggcta 15911828  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| |||||||||||||| | ||||||| ||||||||| |||||| ||||||||||    
T  15911827 taaataggcttccatcttcaacaaataccttgattcttcacttcacctcttttcttaca 15911769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 13278831 - 13278690
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||    
T  13278831 agagccattaatgtggggttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaggacttgttttaggctataaataggcttcca 13278732  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  13278731 tcttcaacaaataccttcattcttcacttcacctcttttctt 13278690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 17309108 - 17308951
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  17309108 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttcggcta 17309009  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| |||||||||||| | | ||||||||||||||||| |||||| ||||||||||    
T  17309008 taaataggcttccatcttc-acaaataccttcattcttcacttcacctcttttcttaca 17308951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 732 - 885
Target Start/End: Original strand, 30490668 - 30490824
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 828  Q
    ||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  30490668 gaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggccata 30490767  T
Q  829 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||| |||| ||||||||| | |||||| |||||||||| ||| || ||||||||||    
T  30490768 aataggctttcatcttcaacaaatacctacattcttcacctcagctcttttcttaca 30490824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 38703573 - 38703730
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  38703573 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttaggcta 38703672  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||  |||||||||||||| | ||||||| ||||||||| |||||| ||||||||||    
T  38703673 taaat-ggcttccatcttcaacaaatacctttattcttcacttcacctcttttcttaca 38703730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 730 - 882
Target Start/End: Original strand, 17137691 - 17137850
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    |||||| ||| |||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17137691 cggaaacatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 17137790  T
Q  827 taaataa----gcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||||||    ||||| |||||||| | ||||||||||||||||| |||||| |||||||    
T  17137791 taaataaacaggcttctatcttcaacaaataccttcattcttcacttcacctcttttctt 17137850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 31994077 - 31994218
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||    
T  31994077 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggtttcca 31994176  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    | ||||| | ||| |||||||| |||| |||||| |||||||    
T  31994177 tattcaacaaatatcttcattcatcacttcacctcttttctt 31994218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 1209930 - 1210072
Alignment:
Q  741 agagccattaa-tatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcc 839  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| ||||||    
T  1209930 agagccattaaatgtgggtttggacggttacaaccactaacacgttttcattgactttattaatgacctaggacttgttttaagctataaataggcttcc 1210029  T
Q  840 atcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||||| | | |||||| |||||||||| |||| | |||||||    
T  1210030 atcttcgacaaatacctgcattcttcacttcacatcttttctt 1210072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 732 - 845
Target Start/End: Complemental strand, 45117224 - 45117111
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 831  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  45117224 gaaagattcagagccgttaatgtggatttggacggttacaaccactaacacgttttcattgactctattaatgacctaagacttgttttaggctataaat 45117125  T
Q  832 aagcttccatcttc 845  Q
    | ||||||||||||    
T  45117124 aggcttccatcttc 45117111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 7942742 - 7942883
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||| |||||||| |  ||||||    
T  7942742 agagccattaatgtaggtttggacggttacaaccactaacatgttttcattgactgtagtaaggacctaggacttgttttatgctataaacagacttcca 7942841  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||| ||||| |||||| |||||||    
T  7942842 tcttcaacaaataccttcattgttcacttcacctcttttctt 7942883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 745 - 882
Target Start/End: Complemental strand, 18137722 - 18137585
Alignment:
Q  745 ccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatctt 844  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||||| ||||  |||||    
T  18137722 ccattaatgtaggttgggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttattttaggctataaataggcttttatctt 18137623  T
Q  845 caagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| | ||||||||||||||||| ||| ||||||||||    
T  18137622 caacaaataccttcattcttcacttcatcttttttctt 18137585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 796 - 885
Target Start/End: Complemental strand, 38207567 - 38207478
Alignment:
Q  796 gtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  38207567 gtattaatgacctaggacttgttttaggctataaatatgcttacatcttcaacaaataccttcattcttcacttcacctcttttcttaca 38207478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 778 - 885
Target Start/End: Original strand, 21485295 - 21485402
Alignment:
Q  778 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 877  Q
    |||||||||| ||||| |||| | |||| ||||||||||||||||||||||||||||||| ||| ||||| | || | |||||||||||| |||||| ||    
T  21485295 aacacgtttttattgattgtacttatgacctaggacttgttttaggctataaataagctttcatattcaacaaattctttcattcttcacttcacctctt 21485394  T
Q  878 ttcttaca 885  Q
    ||||||||    
T  21485395 ttcttaca 21485402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 775 - 864
Target Start/End: Complemental strand, 1114811 - 1114722
Alignment:
Q  775 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattctt 864  Q
    ||||| ||||||||||||||| || |||||| ||||||||||||||| |||||||||| |||| ||||||||| | ||||||||||||||    
T  1114811 actaatacgttttcattgactatactaatgacctaggacttgttttaagctataaataggctttcatcttcaacaaataccttcattctt 1114722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 731 - 800
Target Start/End: Complemental strand, 38208482 - 38208410
Alignment:
Q  731 ggaaagattcagagccattaatatgggtttggacggtt---acaaccactaacacgttttcattgactgtatt 800  Q
    |||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| |||||    
T  38208482 ggaaagattcagagccattaatgtgggtttggacggttgcaacaaccactaacacgttttcattgaccgtatt 38208410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 790 - 884
Target Start/End: Complemental strand, 33946016 - 33945922
Alignment:
Q  790 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    ||||||||| | ||||||||||||||||||||||||||| ||| | || ||||||||| | || |||||||||||||| |||||  |||||||||    
T  33946016 ttgactgtagttatgatctaggacttgttttaggctatatataggtttgcatcttcaacaaattccttcattcttcacttcaccacttttcttac 33945922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 790 - 884
Target Start/End: Original strand, 37127941 - 37128035
Alignment:
Q  790 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    ||||||||||| || || |||||||||||||||||||||||||||||| ||| || || | || | |||||||||||| |||||| |||||||||    
T  37127941 ttgactgtatttatcatataggacttgttttaggctataaataagcttgcatttttaacaaattctttcattcttcacttcacctattttcttac 37128035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 790 - 883
Target Start/End: Original strand, 21649729 - 21649822
Alignment:
Q  790 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctta 883  Q
    ||||||||| | || ||||||||||||||| ||||||||||||  ||||||||||||  | ||  ||||||||||||| |||||||||||||||    
T  21649729 ttgactgtagttataatctaggacttgtttaaggctataaatagtcttccatcttcatcaaatttcttcattcttcacttcaccttttttctta 21649822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 44925758 - 44925676
Alignment:
Q  138 caccatcaccaccacctccagctgttccatttgatcattttttgc-tggtctatcgtggcctcccacgttttgtaaggaatta 219  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||||||| || |||||| ||||||||  ||||||| |||||||||    
T  44925758 caccaccaccacctcctccggctgttcaatttgatcattttttgcttgttctatcatggcctccagcgttttgcaaggaatta 44925676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 44925329 - 44925238
Alignment:
Q  347 gtcgtactgacaacattccattttggattgaacaatggaaaaaccatggcacatgctcagtgtccattttggatcaggttcaataattttct 438  Q
    |||||| ||||||| ||  |||||||  ||||||||||| |   ||||| ||||||||||||||||| ||||||||  ||||||| ||||||    
T  44925329 gtcgtattgacaaccttggattttggggtgaacaatggatactgcatgggacatgctcagtgtccatgttggatcaatttcaatacttttct 44925238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 703
Target Start/End: Complemental strand, 44929447 - 44929408
Alignment:
Q  664 aaatgatgtgtccaaatacttatgaccagttaggactttc 703  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  44929447 aaatgatgtgtccaaatacttgtgatcagttaggactttc 44929408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 801 - 885
Target Start/End: Original strand, 16739457 - 16739538
Alignment:
Q  801 aatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||| |||||||||||||||||||||||| | ||||  |||||||| || | |||| |||||||   |||||| ||||||||||    
T  16739457 aatgacctaggacttgttttaggctataaaaaggcttggatcttcaacattttcctttattcttc---tcacctcttttcttaca 16739538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 650
Target Start/End: Complemental strand, 44929761 - 44929727
Alignment:
Q  616 atattgctttctttttgtaagtaaattgatataga 650  Q
    |||||||||||||||||||||||||||||| ||||    
T  44929761 atattgctttctttttgtaagtaaattgatttaga 44929727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 6e-61; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 35794627 - 35794472
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  35794627 cggaaagatttagagccattaatatggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 35794528  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||| |||||||||||||| | ||||||||||||||||||||| || ||||||||||    
T  35794527 ataggcttccatcttcaacaaataccttcattcttcacatcagctcttttcttaca 35794472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 732 - 882
Target Start/End: Original strand, 14816644 - 14816794
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 831  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14816644 gaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcctataaat 14816743  T
Q  832 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  14816744 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 14816794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 732 - 882
Target Start/End: Original strand, 15263640 - 15263790
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 831  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  15263640 gaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcctataaat 15263739  T
Q  832 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  15263740 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 15263790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 732 - 885
Target Start/End: Complemental strand, 46255015 - 46254859
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 828  Q
    ||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46255015 gaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctata 46254916  T
Q  829 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  46254915 aataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttaca 46254859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 729 - 882
Target Start/End: Complemental strand, 43458335 - 43458183
Alignment:
Q  729 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 828  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  43458335 tcggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggctata 43458236  T
Q  829 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||| || | ||||||||| | ||||||||||||||||| |||||| |||||||    
T  43458235 aataggc-tacatcttcaacaaataccttcattcttcacttcacctcttttctt 43458183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 34847861 - 34848019
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  34847861 cggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttatgcta 34847960  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  34847961 taaataggcttccatcttcaacagataccttcattcttcacttcacctcttttcttaca 34848019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 732 - 882
Target Start/End: Original strand, 25529097 - 25529247
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 831  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||||    
T  25529097 gaaagattcagagtcattaatgtgggtttggacggttacaaccactgacacgtattcattgattgtattaatgacctaggacttgttttaggctataaat 25529196  T
Q  832 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  25529197 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 25529247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 33951082 - 33950924
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33951082 cggaacgattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 33950983  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||||| ||| |||||||| | ||||||| ||||||||| | |||| ||||||||||    
T  33950982 taaataagtttctatcttcaacaaatacctttattcttcactttacctcttttcttaca 33950924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 36312068 - 36312225
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  36312068 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgtttttattgactgtattaatgacctagaacttgttttaggcta 36312167  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    | ||||  ||||||||||||| | ||| ||||||| ||||| |||||| ||||||||||    
T  36312168 t-aatagacttccatcttcaacaaatatcttcattgttcacttcacctcttttcttaca 36312225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 758 - 873
Target Start/End: Complemental strand, 1377470 - 1377355
Alignment:
Q  758 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 857  Q
    |||||| |||||  ||||| ||||||||||||||||||||| | ||||  || ||||| |||||||||||||||| |||||||||||||| | ||  |||    
T  1377470 tttggatggttagcaccacaaacacgttttcattgactgtacttatgacatatgacttattttaggctataaataggcttccatcttcaacaaatttctt 1377371  T
Q  858 cattcttcacatcacc 873  Q
    |||||||||| |||||    
T  1377370 cattcttcacttcacc 1377355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 778 - 885
Target Start/End: Complemental strand, 1852250 - 1852143
Alignment:
Q  778 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 877  Q
    |||||||||||||||| |||| | |||| |||||  ||||||||||||||| |||||||| |||||| || | |  |||||||||||||| |||||| ||    
T  1852250 aacacgttttcattgattgtacttatgacctaggtattgttttaggctatatataagcttgcatcttgaacaaagtccttcattcttcacttcacctctt 1852151  T
Q  878 ttcttaca 885  Q
    ||||||||    
T  1852150 ttcttaca 1852143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 795 - 882
Target Start/End: Original strand, 42321186 - 42321273
Alignment:
Q  795 tgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||||| | ||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| |||||| |||||||    
T  42321186 tgtattaataacctatgacttgttttaggttataaataggcttccatcttcaacaaatatcttcattcttcacttcacctcttttctt 42321273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 805 - 882
Target Start/End: Complemental strand, 44863090 - 44863013
Alignment:
Q  805 atctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||||||||||||| |||||||||| ||||| ||||| || | ||||||||||||||||| |||||| |||||||    
T  44863090 atctaggacttgttttaagctataaatatgcttcaatcttgaacaaataccttcattcttcacttcacctcttttctt 44863013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 778 - 885
Target Start/End: Complemental strand, 19647046 - 19646939
Alignment:
Q  778 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 877  Q
    ||||||||||  ||||||||| | ||||||||||||| |||| || ||||||||| ||||  |||||||| |  | ||||||||||| || |||||| ||    
T  19647046 aacacgttttacttgactgtaattatgatctaggactggtttaagactataaatatgcttgaatcttcaacaatttccttcattctttacttcacctctt 19646947  T
Q  878 ttcttaca 885  Q
    ||||||||    
T  19646946 ttcttaca 19646939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 884
Target Start/End: Original strand, 31326669 - 31326763
Alignment:
Q  790 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    ||||||||| | ||||| ||||||||||||||  ||||||||| | || ||||||||| | ||  ||||||||||||| |||||| |||||||||    
T  31326669 ttgactgtaattatgatttaggacttgttttatactataaataggtttgcatcttcaacaaatttcttcattcttcacttcacctcttttcttac 31326763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 775 - 878
Target Start/End: Original strand, 26188205 - 26188308
Alignment:
Q  775 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 874  Q
    ||||||| |||||  |||| |||| | |||| ||||||| ||||||||| |||||||| || | ||| ||||| | || |||||||||||||| ||||||    
T  26188205 actaacatgttttgcttgattgtacttatgacctaggacatgttttaggttataaataggcatgcatgttcaacaaattccttcattcttcacttcacct 26188304  T
Q  875 tttt 878  Q
    ||||    
T  26188305 tttt 26188308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 730 - 773
Target Start/End: Complemental strand, 44866198 - 44866155
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac 773  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  44866198 cggaaagattcagagccattattgtgggtttggacggttacaac 44866155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 790 - 884
Target Start/End: Original strand, 1906577 - 1906671
Alignment:
Q  790 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    ||||||||| |  ||||||||||| ||||| || ||||||||| ||||  |||||||| |  | ||| |||||||||| |||||| |||||||||    
T  1906577 ttgactgtagttgtgatctaggacatgtttaagactataaataggcttgaatcttcaacaagttcctgcattcttcacttcacctcttttcttac 1906671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 802 - 884
Target Start/End: Original strand, 3601033 - 3601115
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    |||||| |||| |||||||||||||||||||  ||| ||||||||| | ||  |||| |||||||| ||| || |||||||||    
T  3601033 atgatcaaggatttgttttaggctataaatagacttgcatcttcaacaaatttcttcgttcttcacttcaactcttttcttac 3601115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 865
Target Start/End: Original strand, 35585120 - 35585174
Alignment:
Q  811 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 865  Q
    |||||||||||||||||||| ||||||  |||||||| || | ||||||||||||    
T  35585120 gacttgttttaggctataaaaaagcttggatcttcaacattttccttcattcttc 35585174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 4e-59; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 47647068 - 47646910
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47647068 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 47646969  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  47646968 taaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttaca 47646910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 733 - 885
Target Start/End: Original strand, 47013707 - 47013859
Alignment:
Q  733 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaata 832  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  47013707 aaagattcagagccattaatgtgggtttggatggttacaaccactaacacgttttcattgaccgtattaatgacctaggacttgttttaggctataaata 47013806  T
Q  833 agcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
     | |||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  47013807 ggtttccatcttcaacaaataccttcattcttcacttcacctcttttcttaca 47013859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 6936605 - 6936464
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  6936605 agagccattaatatgggtttgggcggttacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttaggctataaataggcttcca 6936506  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | |||| |||||||||||| ||||||||||||||    
T  6936505 tcttcaacaaatacattcattcttcacttcaccttttttctt 6936464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 32529937 - 32529796
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  32529937 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattaactgtattaatgacctaggacttgttttaggctataaataggcttcca 32529838  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  32529837 tcttcaacaaataccttcattcttcacttcacctcttttctt 32529796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 10509207 - 10509365
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10509207 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttaggcta 10509306  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| ||||| |||||||| | ||||||||||||||||| |||||| ||||||||||    
T  10509307 taaataggcttctatcttcaacaaataccttcattcttcacttcacctcttttcttaca 10509365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 36402696 - 36402854
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  36402696 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggtta 36402795  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  36402796 taaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttaca 36402854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 729 - 882
Target Start/End: Complemental strand, 40937367 - 40937214
Alignment:
Q  729 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 828  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  40937367 tcggaaagattcagagtctttaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctata 40937268  T
Q  829 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||| |||||||||||||| | |||| |||||| ||||| |||||| |||||||    
T  40937267 aataggcttccatcttcaacaaatactttcatttttcacttcacctcttttctt 40937214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 149475 - 149323
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  149475 cggaaagattcagagtcattaacgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 149376  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||||||||||||| | |||| | |||||||||| |||||| |||||||    
T  149375 ataggcttccatcttcaacaaatacttacattcttcacttcacctcttttctt 149323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 738 - 882
Target Start/End: Complemental strand, 227770 - 227626
Alignment:
Q  738 ttcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagctt 837  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||    
T  227770 ttcagagccattgatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagactt 227671  T
Q  838 ccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| || | ||||||||||||||||| |||||| |||||||    
T  227670 ccatctttaacaaataccttcattcttcacttcacctcttttctt 227626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 730 - 882
Target Start/End: Original strand, 26502177 - 26502332
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  26502177 cggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagacta 26502276  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||||| |||||||||||||| | |||||| |||||||||| |||||| |||||||    
T  26502277 taaataggcttccatcttcaacaaatacctacattcttcacttcacctcttttctt 26502332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 41193717 - 41193858
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  41193717 agagctattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaatatgcttcca 41193816  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||| ||| |||||| |||||||    
T  41193817 tcttcaacaaataccttcattctccacttcacctcttttctt 41193858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 39586722 - 39586567
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||    
T  39586722 cggaaagattcagagccattaatgtgggtttggatggttacaaccactaacacggtttcattgactgtattaatgacctaggatttgttttaagctataa 39586623  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||| |||||||| ||||| | |||| |||||||||||  |||||| ||||||||||    
T  39586622 ataggcttccattttcaacaaatactttcattcttcaattcacctattttcttaca 39586567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 39353435 - 39353294
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  39353435 agagtcattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctataaataggcttcca 39353336  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | |||| |||||||||||| || ||| |||||||    
T  39353335 tcttcaacagatacattcattcttcacttcgcctcttttctt 39353294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 49166110 - 49166250
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||| | |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  49166110 agagtcattaatgtaggttaggacggttacaaccactaacatgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttcca 49166209  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||| | | ||||||||||||||||| |||| | |||||||    
T  49166210 tcttc-acaaataccttcattcttcacttcacatcttttctt 49166250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 746 - 882
Target Start/End: Original strand, 31765207 - 31765343
Alignment:
Q  746 cattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttc 845  Q
    ||||||| | |||||| ||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||| |||||||| ||||||||||||    
T  31765207 cattaatgtaggtttgaacggttacaaccactaacacgtttttattgactgcactaatgacctaggacttgttttaggttataaataggcttccatcttc 31765306  T
Q  846 aagatataccttcattcttcacatcaccttttttctt 882  Q
    || | ||||||||||||||||| ||||||| ||||||    
T  31765307 aacaaataccttcattcttcacttcaccttctttctt 31765343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 775 - 885
Target Start/End: Complemental strand, 41174913 - 41174803
Alignment:
Q  775 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 874  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||| |    
T  41174913 actaacacgttttcattgactgtattaatgacataggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacat 41174814  T
Q  875 tttttcttaca 885  Q
     ||||||||||    
T  41174813 cttttcttaca 41174803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 758 - 885
Target Start/End: Complemental strand, 33843637 - 33843510
Alignment:
Q  758 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 857  Q
    ||||||| ||||  ||||| ||||||||||  ||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||| | || ||||    
T  33843637 tttggacagttagcaccacaaacacgttttatttgactgtggttatgatctaggacttgttttaggctataaataggtttccatcttcaacaaattcctt 33843538  T
Q  858 cattcttcacatcaccttttttcttaca 885  Q
    |||||||||| |||||| |||| |||||    
T  33843537 cattcttcacttcacctctttttttaca 33843510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 802 - 885
Target Start/End: Complemental strand, 42899294 - 42899211
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||| || |||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| |||||||||||||||||    
T  42899294 atgatatatgacttgttttaggctataaataggcttgcattttcaacaaattccttcattcttcacttcaccttttttcttaca 42899211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 802 - 885
Target Start/End: Original strand, 51328989 - 51329072
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||| |||||||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| |||||| |||| |||||    
T  51328989 atgaactaggacttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttcacttcacctcttttattaca 51329072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 802 - 884
Target Start/End: Original strand, 25214595 - 25214677
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    |||||||||||||||||||||||||||||||  ||| |||||| || | || |||||||||||||  |||||  |||||||||    
T  25214595 atgatctaggacttgttttaggctataaatagacttacatctttaacaaattccttcattcttcaattcaccacttttcttac 25214677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 730 - 773
Target Start/End: Complemental strand, 41182049 - 41182006
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac 773  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  41182049 cggaaagattcagagccattaatgtgggtttggatggttacaac 41182006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 805 - 865
Target Start/End: Original strand, 44207641 - 44207701
Alignment:
Q  805 atctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 865  Q
    ||||| |||||||||||||||||||| ||||||  |||||||| || | ||||||||||||    
T  44207641 atctatgacttgttttaggctataaaaaagcttggatcttcaacattttccttcattcttc 44207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 811 - 867
Target Start/End: Complemental strand, 53394013 - 53393957
Alignment:
Q  811 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcac 867  Q
    |||||||||||||||||||||| |||| ||| ||||| | || ||||||||||||||    
T  53394013 gacttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttcac 53393957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 778 - 865
Target Start/End: Original strand, 21979926 - 21980013
Alignment:
Q  778 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 865  Q
    ||||||||||  ||||||||| | | || ||| ||||| ||| |||||||||| ||||||  ||||||||||| | ||||||||||||    
T  21979926 aacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagcttggatcttcaagattttccttcattcttc 21980013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 778 - 865
Target Start/End: Original strand, 22002357 - 22002444
Alignment:
Q  778 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 865  Q
    ||||||||||  ||||||||| | | || ||| ||||| ||| |||||||||| ||||||  ||||||||||| | ||||||||||||    
T  22002357 aacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagcttggatcttcaagattttccttcattcttc 22002444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 824 - 885
Target Start/End: Original strand, 10494800 - 10494861
Alignment:
Q  824 ctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||||||| ||||  |||||||| |  | |||||||||||||| |||||||||||||||||    
T  10494800 ctataaatatgcttagatcttcaacaatttccttcattcttcacttcaccttttttcttaca 10494861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 2e-58; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 40728175 - 40728020
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40728175 cggaaagattcatagccattaatgtgggtatggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 40728076  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||| |||| ||||||||| | |||||||||||||||||||||||| ||||||||||    
T  40728075 ataggctttcatcttcaacaaataccttcattcttcacatcacctcttttcttaca 40728020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 45229219 - 45229064
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  45229219 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcatggactgtattaatgacctaggacttgttttaggctataa 45229120  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||| | |||||||||||| | |||  ||||||||||||||||||| ||||||||||    
T  45229119 ataggattccatcttcaacaaatatattcattcttcacatcacctcttttcttaca 45229064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 731 - 885
Target Start/End: Original strand, 28780765 - 28780919
Alignment:
Q  731 ggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaa 830  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  28780765 ggaaagattcagagccattaatgtggttttgggcggttacaaccactaacacgttttcattgactgtattaatgacatatgacttgttttaggctataaa 28780864  T
Q  831 taagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    || |||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  28780865 taggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttaca 28780919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 35158868 - 35158716
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  35158868 cggaaagattcagagccattattgtgggtttggacggttagaaccactaacacgttttcatttactgtattaatgacctaggacttgttttaggctataa 35158769  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  35158768 ataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 35158716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 732 - 882
Target Start/End: Complemental strand, 33281233 - 33281083
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 831  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  33281233 gaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgattgtattaatgacctaagacttgttttaggctataaat 33281134  T
Q  832 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    | |||| ||||||||| | ||||||||||||||||| |||||| |||||||    
T  33281133 aggcttacatcttcaacaaataccttcattcttcacttcacctcttttctt 33281083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 31093255 - 31093103
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||    
T  31093255 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgatctcattgactgtattaatgacctatgacttgttttaggctataa 31093156  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  31093155 ataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 31093103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 52416919 - 52417077
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  52416919 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaagacttgttttaggcta 52417018  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| |||||||||||||| | ||||| ||||||||||| |||||| ||||||||||    
T  52417019 taaataggcttccatcttcaacaaataccctcattcttcacttcacctcttttcttaca 52417077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 16024022 - 16023867
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  16024022 cggaaagattcagagtcattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaataacctatgacttgttttaggctataa 16023923  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||| |||||||| ||||| | ||||||||||||||||| |||||| ||||||||||    
T  16023922 ataggcttccatattcaacaaataccttcattcttcacttcacctcttttcttaca 16023867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 1602932 - 1602781
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  1602932 cggaaagattcagagtcattaatgtggatttggacggttacaaccactaacacgtttt-attgactgtattaatgacctaggacttgttttaggctataa 1602834  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| |||||||    
T  1602833 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttctt 1602781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 45462400 - 45462248
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45462400 cggaaagattcagagccattattgtgggtttggacggttacaaccactgacacgttttcattgactgtattaatgatctatgacttgttttaggctataa 45462301  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||  ||| ||||||||| | ||| ||||||||||||| |||||| |||||||    
T  45462300 atagactttcatcttcaacaaatatcttcattcttcacttcacctattttctt 45462248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 2013733 - 2013874
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  2013733 agagtcattaatgtggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaattggcttcca 2013832  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  2013833 tcttcaacaaataccttcattcttcacttcacctcttttctt 2013874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 4189874 - 4190015
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  4189874 agagtcattaatgtgggtttggacggttacaaccactaacacgtttttattgactatattaatgacctaggacttgttttaggctataaataggcttcca 4189973  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  4189974 tcttcaacaaataccttcattcttcacttcacctcttttctt 4190015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 38551270 - 38551411
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  38551270 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacctaggacttgttttaggctataaataggcttcca 38551369  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  38551370 tcttcaacaaataccttcattcttcacttcacatcttttctt 38551411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 49374466 - 49374315
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  49374466 cggaaagattcagagccattaatgtgggtttggacagttacaaccactaacacgttttcattgactgta-taatgacctatgacttgttttaggctataa 49374368  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||||||||||||| | | |||| |||||||||| |||||| |||||||    
T  49374367 ataggcttccatcttcaacaaaaacctccattcttcacttcacctcttttctt 49374315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 51538794 - 51538642
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||| ||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  51538794 cggaaagattcagggccattaatgtgggtttggacagttgcaaccaccaacatgttttcattgactgtattaatgacttaggacttgttttaggctataa 51538695  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  51538694 atatgcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 51538642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 30003762 - 30003608
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgtt--ttaggctat 827  Q
    ||||||||||||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||  |||||||||    
T  30003762 cggaaagattcagagtcattattgtgggtttggacggttacaagcaataacacgttttcattgactgtattaatgacctaggacttgtttattaggctat 30003663  T
Q  828 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  30003662 aaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 30003608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 4048271 - 4048130
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||    
T  4048271 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgattgtattaataacctaggacttgttttaggctataaataggcttcca 4048172  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  4048171 tcttcaacaaataccttcattcttcacttcacctcttttctt 4048130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 168540 - 168681
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||  ||||||    
T  168540 agagccactaatgtgggtttggacgtttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttagactataaatagccttcca 168639  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  168640 tcttcaacaaataccttcattcttcacttcacctcttttctt 168681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 6963592 - 6963451
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| || |||||| ||||||||| |||||||||||||||| |||||||    
T  6963592 agagccattaatgtgggtttggacggttacaatcactaacacattttcattgactatagtaatgacctaggacttattttaggctataaataggcttcca 6963493  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  6963492 tcttcaacaaataccttcattcttcacttcacctcttttctt 6963451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 757 - 882
Target Start/End: Complemental strand, 16452052 - 16451927
Alignment:
Q  757 gtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacct 856  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||    
T  16452052 gtttgaacggttacaaccactaacacgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttccatcttcagcagatacct 16451953  T
Q  857 tcattcttcacatcaccttttttctt 882  Q
    ||||||||||| |||||| |||||||    
T  16451952 tcattcttcacttcacctcttttctt 16451927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 15542841 - 15542981
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    ||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  15542841 agagcaattaatgtgggtttggacggttaaaac-actaacacgttttcattgactatagtaatgacctaggacttgttttaggctataaataggcttcca 15542939  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  15542940 tcttcaacaaataccttcattcttcacttcacctcttttctt 15542981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 45924736 - 45924595
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| |    
T  45924736 agagccattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataaataggtttcaa 45924637  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | |||||||||||| |||| | |||| |||||||    
T  45924636 tcttcaacaaataccttcattcctcacttaacctcttttctt 45924595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 733 - 885
Target Start/End: Complemental strand, 55136814 - 55136659
Alignment:
Q  733 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||| | |||||||| ||||||||||||||||||||   |||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||    
T  55136814 aaagattcaaatccattaatgtgggtttggacggttacaacaaccactaacacgttatcattgattgtattaatgacctatgacttgttttaggctataa 55136715  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  55136714 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttcttaca 55136659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 733 - 885
Target Start/End: Original strand, 9036089 - 9036243
Alignment:
Q  733 aaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    |||||||||||| ||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  9036089 aaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggactt-ttttaggctataa 9036187  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||| |||| ||||||||| | |||| |||||||||||  |||||| ||||||||||    
T  9036188 ataggctttcatcttcaacaaatacattcattcttcatttcacctcttttcttaca 9036243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 38218251 - 38218409
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||| || ||||||| |||| |||||||||||| ||||||   ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||    
T  38218251 cggaaaggtttagagccactaatgtgggtttggacgattacaacaaccactaacacgttttcattgactgtattaatgacctagaacttgttttagccta 38218350  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| |||||||||||||| | |||||| |||||||||| |||||| |||| |||||    
T  38218351 taaataggcttccatcttcaacaaatacctacattcttcacttcacctctttttttaca 38218409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 43841863 - 43842021
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    |||||||||||| |||||||||| |||||||||||||||||||   ||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  43841863 cggaaagattcatagccattaatgtgggtttggacggttacaacaaccactaagacgttttaattgactgtattaatgacctatgacttgttttaggcta 43841962  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||||  ||| ||||||||| | |||| |||||||||||  |||||| ||||||||||    
T  43841963 taaatagactttcatcttcaacaaatacattcattcttcaattcacctattttcttaca 43842021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 730 - 859
Target Start/End: Original strand, 56463635 - 56463767
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    |||||||| || ||||||||||| |||||||||||||||||||   |||||||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  56463635 cggaaagactcggagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgaccgtggacttgttttaggcta 56463734  T
Q  827 taaataagcttccatcttcaagatataccttca 859  Q
    |||||| |||||||||||||| | |||||||||    
T  56463735 taaataggcttccatcttcaacaaataccttca 56463767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 741 - 879
Target Start/End: Original strand, 28310890 - 28311029
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggac-ttgttttaggctataaataagcttcc 839  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||  ||||||||| ||||||    
T  28310890 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgaccgtattaatgacctaagactttgttttatactataaataggcttcc 28310989  T
Q  840 atcttcaagatataccttcattcttcacatcacctttttt 879  Q
    |||||||| | ||||||||||||||||  |||||| ||||    
T  28310990 atcttcaacaaataccttcattcttcatttcacctctttt 28311029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 35319896 - 35320037
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||| || ||||||||||||||||| ||||||||||||||||| ||| || |||||| ||| ||||||||||| |||||||||| |||||||    
T  35319896 agagtcattaatgtgagtttggacggttacaactactaacacgttttcattaactatagtaatgacctatgacttgttttaagctataaataggcttcca 35319995  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | |||| |||||||| ||| |||||| |||||||    
T  35319996 tcttcaacaaatactttcattctccacttcacctcttttctt 35320037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 802 - 885
Target Start/End: Original strand, 39807338 - 39807421
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||||||||| |||||||| |||||||||| |||| ||||||||| | || |||||||||||||| |||||| ||||||||||    
T  39807338 atgatctaggatttgttttacgctataaataggctttcatcttcaacaaattccttcattcttcacttcacctcttttcttaca 39807421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 778 - 884
Target Start/End: Original strand, 34953601 - 34953707
Alignment:
Q  778 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 877  Q
    ||||||||||  ||||||||| | |||||||||||||| |||||||||||||||| | || ||||||||| | |   ||| ||||||||| |||||||||    
T  34953601 aacacgttttatttgactgtagttatgatctaggacttattttaggctataaataggtttgcatcttcaacaaacttctttattcttcacttcacctttt 34953700  T
Q  878 ttcttac 884  Q
    |||||||    
T  34953701 ttcttac 34953707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 802 - 884
Target Start/End: Complemental strand, 40602818 - 40602736
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    |||||||||||||||||| | |||||||||| |||| ||||||||| | |  |||||||||||||| |||||| |||||||||    
T  40602818 atgatctaggacttgtttaatgctataaataggcttacatcttcaacaaactccttcattcttcacttcacctcttttcttac 40602736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 778 - 866
Target Start/End: Complemental strand, 20516770 - 20516682
Alignment:
Q  778 aacacgttttcattgactgta-ttaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttca 866  Q
    ||||||||||  ||||||||| ||||| |||||||| ||||||||||||||||||| |||| ||||||||| | || |||||||||||||    
T  20516770 aacacgttttatttgactgtagttaat-atctaggatttgttttaggctataaataggcttgcatcttcaacaaattccttcattcttca 20516682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 802 - 884
Target Start/End: Complemental strand, 56084189 - 56084107
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    |||||||||||||||||| |||||||||||| |||| ||| ||||| | || | |||||||||||| || | | |||||||||    
T  56084189 atgatctaggacttgtttaaggctataaatatgcttgcatattcaacaaattcattcattcttcacttctcatcttttcttac 56084107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 2e-58; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 42882579 - 42882734
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  42882579 cggaaagattcagagccattattgtgggtttggatggttacaaccactaacacattttcattgactgtattaatgacctaggacttgttttaggctataa 42882678  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||| |||||||||||||| | ||| |||||||||||||||||||| ||||||||||    
T  42882679 ataggcttccatcttcaacaaatatcttcattcttcacatcacctcttttcttaca 42882734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 730 - 883
Target Start/End: Complemental strand, 37952449 - 37952296
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37952449 cggaaagattcagagtcattaatgtgggtttggaccgttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 37952350  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctta 883  Q
    | | |||||||||||||| | ||||||||||||||||| |||||| ||||||||    
T  37952349 aaaggcttccatcttcaacaaataccttcattcttcacttcacctcttttctta 37952296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 41091305 - 41091164
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  41091305 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 41091206  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  41091205 tcttcaacaaataccttcattcttcacttcacttcttttctt 41091164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 50261992 - 50262133
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  50261992 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 50262091  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  50262092 tcttcaacaaataccttcattcttcacttcacctcttttctt 50262133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 44496634 - 44496482
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  44496634 cggaaagattcaaagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggctataa 44496535  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||| ||||||||| | |||| ||||||||||||  ||||| |||||||    
T  44496534 ataggctttcatcttcaacaaatactttcattcttcactccacctattttctt 44496482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 38860814 - 38860673
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||    
T  38860814 agagccattaatgtgggtttggacggttactaccactaacacgttttcattgaatgtattaatgatctatgacttgttttaggctataaataggctttca 38860715  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  38860714 tcttcaacaaataccttcattcttcacttcacctcttttctt 38860673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 41086537 - 41086396
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  41086537 agagccattaatgtgggtttggaaggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagactataaataggcttcca 41086438  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  41086437 tcttcaacaaataccttcattcttcacttcacttcttttctt 41086396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 41900288 - 41900429
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  41900288 agagccattaatgtgggtttggacggttacaaccactaacacattttcattgactgtattaatgacctatgacttgttttaggctataaataggcttcca 41900387  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| | |||| |||||||    
T  41900388 tcttcaataaataccttcattcttcaccttacctcttttctt 41900429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 729 - 885
Target Start/End: Complemental strand, 29961547 - 29961391
Alignment:
Q  729 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 828  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||  || ||||| ||||||||||||    
T  29961547 tcggaaagattcagagccattaatgtgggtttgaacggttacaaccactaacacgttttcattgattgtattaatgacttaagacttattttaggctata 29961448  T
Q  829 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||  ||||||||||||| | ||||||||||||||||| |||| | ||||||||||    
T  29961447 aatagacttccatcttcaacaaataccttcattcttcacttcacatcttttcttaca 29961391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 731 - 885
Target Start/End: Original strand, 12700526 - 12700683
Alignment:
Q  731 ggaaagattcagagccattaatatgggtttggacggttacaacca---ctaacacgttttcattgactgtattaatgatctaggacttgttttaggctat 827  Q
    |||||||||||||||||||||| || |||||||| ||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12700526 ggaaagattcagagccattaatgtgcgtttggacagttacaaccaccactaacacattttcattgactgtattaatgatctaggacttgttttaggctat 12700625  T
Q  828 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||| |||||||||||||| | ||| ||||||||||||| | |||| ||||||||||    
T  12700626 aaataggcttccatcttcaacaaatatcttcattcttcacttgacctcttttcttaca 12700683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 12528583 - 12528442
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  12528583 agagtcattaatatgaatttcgacggttacaaccaccaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 12528484  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  12528483 tcttcaacaaataccttcattcttcacttcacctattttctt 12528442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 14587326 - 14587487
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    |||||||||||||||||||| || |||||||||||||||||||   |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  14587326 cggaaagattcagagccatttatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttaggcta 14587425  T
Q  827 taaata---agcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||||    |||||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  14587426 taaataggcggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttaca 14587487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 731 - 885
Target Start/End: Complemental strand, 33801514 - 33801357
Alignment:
Q  731 ggaaagattcagagccattaatatgggtttggacggttaca---accactaacacgttttcattgactgtattaatgatctaggacttgttttaggctat 827  Q
    |||||||||||||| ||||||| |||||||||||| |||||   ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  33801514 ggaaagattcagagtcattaatgtgggtttggacgattacagcaaccactaacacgttttcattgactgtaataatgacttaggacttgttttaggctat 33801415  T
Q  828 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||| |||||||||||||| | |||||| |||||||||| |||||| ||||||||||    
T  33801414 aaataggcttccatcttcaaaaaatacctacattcttcacttcacctcttttcttaca 33801357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 11952421 - 11952562
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||   | ||||| |||||||||||||||| |||||||    
T  11952421 agagccattaatgtgagtttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaagacttattttaggctataaataggcttcca 11952520  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  11952521 tcttcaacaaataccttcattcttcacttcacctcttttctt 11952562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 49851846 - 49851705
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||    
T  49851846 agagccatcaatgtaggtttggacggttacaaccactaacatgttttcattgactgtactaatgacctaggacttgttttaggctataaataggctttca 49851747  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  49851746 tcttcaacaaataccttcattcttcacttcacctcttttctt 49851705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 743 - 880
Target Start/End: Original strand, 52632362 - 52632499
Alignment:
Q  743 agccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatc 842  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  52632362 agccattaatgtgggtttagacggttacaaccactaacacgttttcattgattgtattaatgacctaggacttgttttaggctataaataggcttccatc 52632461  T
Q  843 ttcaagatataccttcattcttcacatcaccttttttc 880  Q
    ||||| | ||  ||||||||||||| |||||| |||||    
T  52632462 ttcaacaaatgtcttcattcttcacttcacctcttttc 52632499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 3517564 - 3517719
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||   |||| |||||| |||||||||||||    
T  3517564 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgta---atgacctaggagttgttttaggcta 3517660  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||||  |||  |||||||| | ||||||||||||||||| |||||| ||||||||||    
T  3517661 taaatagacttttatcttcaacaaataccttcattcttcacttcacctcttttcttaca 3517719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 757 - 882
Target Start/End: Complemental strand, 27216920 - 27216795
Alignment:
Q  757 gtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacct 856  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||| ||||||||| | |||| |    
T  27216920 gtttggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttgttttaggctataaataggctttcatcttcaaaaaatactt 27216821  T
Q  857 tcattcttcacatcaccttttttctt 882  Q
    ||||||||||| |||||| |||||||    
T  27216820 tcattcttcacttcacctcttttctt 27216795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 23984039 - 23984177
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| |||||||  ||||||||||||||||||||||||||| ||||||||||||||||   |||| |||||||||||||||||||||||||| | |||||    
T  23984039 agagtcattaatgagggtttggacggttacaaccactaacatgttttcattgactgta---atgacctaggacttgttttaggctataaataggtttcca 23984135  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  23984136 tcttcaacaaataccttcattcttcacttcacctcttttctt 23984177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 733 - 882
Target Start/End: Complemental strand, 41723676 - 41723525
Alignment:
Q  733 aaagattcagagccattaatatgggtttggacggt---tacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    |||||||||||||||||||| |||||||||||| |    |||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  41723676 aaagattcagagccattaatgtgggtttggacgataacaacaaccaccaacacgttttcattgactatattaatgaccta-gacttgttttaggctataa 41723578  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| |||||||    
T  41723577 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttctt 41723525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 791 - 885
Target Start/End: Original strand, 44757581 - 44757675
Alignment:
Q  791 tgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  44757581 tgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttaca 44757675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 733 - 799
Target Start/End: Original strand, 48964920 - 48964986
Alignment:
Q  733 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtat 799  Q
    |||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  48964920 aaagattcagagtcattaatgtgggtttggacggttagaatcactaacacgttttcattgactgtat 48964986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 802 - 884
Target Start/End: Complemental strand, 34549931 - 34549849
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    ||||||||||||||||||||||||||||||| | || ||| ||||| | || |||||||||||||| |||||| |||||||||    
T  34549931 atgatctaggacttgttttaggctataaataggtttgcatattcaacaaattccttcattcttcacgtcacctgttttcttac 34549849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 730 - 777
Target Start/End: Complemental strand, 22858847 - 22858800
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccact 777  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  22858847 cggaaagattcagagccattaatgtgggttttgacggttacaaccact 22858800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 835 - 885
Target Start/End: Complemental strand, 22858801 - 22858751
Alignment:
Q  835 cttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  22858801 cttccatcttcaacaaataccttcattcttcacatcacctcttttcttaca 22858751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 825 - 885
Target Start/End: Original strand, 48964984 - 48965044
Alignment:
Q  825 tataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||||| |||||||||||||| | |||| ||||||||||| ||||||| ||||||||||    
T  48964984 tataaataggcttccatcttcaacaaatacgttcattcttcatatcacctcttttcttaca 48965044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 778 - 837
Target Start/End: Complemental strand, 29913928 - 29913869
Alignment:
Q  778 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagctt 837  Q
    ||||||||||||||| ||||| | || | |||||||||||||| || |||||||||||||    
T  29913928 aacacgttttcattgtctgtacttataacctaggacttgttttgggttataaataagctt 29913869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 867
Target Start/End: Original strand, 30518205 - 30518264
Alignment:
Q  808 taggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcac 867  Q
    ||||||||||||||||||||||||| |||| ||| ||||| | ||  |||||||||||||    
T  30518205 taggacttgttttaggctataaataggcttgcatgttcaaaaaatttcttcattcttcac 30518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 865
Target Start/End: Original strand, 22334962 - 22335016
Alignment:
Q  811 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 865  Q
    |||||||||||||||||||| | ||||| |||||||| || | ||||||||||||    
T  22334962 gacttgttttaggctataaaaaggcttcgatcttcaacattttccttcattcttc 22335016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 9e-57; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 730 - 882
Target Start/End: Original strand, 8239976 - 8240128
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||    
T  8239976 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattaactgtattaataacataggacttgttttaggctataa 8240075  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  8240076 ataggcttccatcttcaacaaataccttcattcttcacttcaccttttttctt 8240128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 730 - 882
Target Start/End: Original strand, 39318584 - 39318736
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  39318584 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 39318683  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||||||||||||| | ||||||||||| ||||| |||||| |||||||    
T  39318684 ataggcttccatcttcaacaaataccttcattattcacttcacctcttttctt 39318736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 882
Target Start/End: Original strand, 35684004 - 35684156
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  35684004 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgttttaatgacccagtacttgttttaggctataa 35684103  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||  |||||||    
T  35684104 ataggcttccatcttcaacaaataccttcattcttcacttcaccaattttctt 35684156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 882
Target Start/End: Original strand, 40105238 - 40105390
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40105238 cggaaagattcagagtcattattgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 40105337  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||| ||||||||| | ||||||||||||||||  |||||| |||||||    
T  40105338 ataggctttcatcttcaacaaataccttcattcttcaattcacctcttttctt 40105390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 43098545 - 43098686
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  43098545 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactataataatgacctaggacttgttttaggctataaataggcttcca 43098644  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | |||| |||||||||||| |||||| |||||||    
T  43098645 tcttcaacaaatacattcattcttcacttcacctcttttctt 43098686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 6347433 - 6347292
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| | |||||||    
T  6347433 agagccattaatgtgggtttggacggttacaaccactaacacgttttcatttactgtactaatgacctaggacttgttttaggctataaacatgcttcca 6347334  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||  |||||| |||||||    
T  6347333 tcttcaacaaataccttcattcttcatttcacctcttttctt 6347292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 729 - 882
Target Start/End: Complemental strand, 11076378 - 11076225
Alignment:
Q  729 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 828  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  11076378 tcggaaagattcagagtcattattgtgggtttggacggttacaaccactaacacgtttttattgactgtattaatgacctaggacttgttttagactata 11076279  T
Q  829 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||  ||||||| ||||| | ||||||| ||||||||| |||||| |||||||    
T  11076278 aatagacttccattttcaacaaataccttaattcttcacttcacctcttttctt 11076225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 37098471 - 37098330
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||  | |||||||||||||||||||||||||||| ||    
T  37098471 agagccattaatgtgggtttagacggttacaaccactaacacgtttttattgactgtattaatgacatgggacttgttttaggctataaataagctttca 37098372  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  37098371 tcttcaacaaataccttcattcttcacttcacctcttttctt 37098330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 39260278 - 39260436
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccac---taacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| ||   ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  39260278 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccattaacacgtttttattgactgtattaatgacctaggacttgttttaggcta 39260377  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| ||||| |||||||| | |||| |||||||||||| |||||| ||||||||||    
T  39260378 taaataggcttctatcttcaacaaatacattcattcttcacttcacctcttttcttaca 39260436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 32337948 - 32337807
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||| ||| | ||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  32337948 agagccatcaatgtaggtttggacggttacaatcactaacacgttttcattgattgtactaatgacctaggacttggtttaggctataaataggcttcca 32337849  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  32337848 tcttcaacaaataccttcattcttcacttcacctcttttctt 32337807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 741 - 872
Target Start/End: Complemental strand, 20091998 - 20091867
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||| ||| |||||||    
T  20091998 agagccattaatgtcggtttggacagttacaaccactaacacgttttcattgaccgtagtaatgacataggacttgttttaggctatatataggcttcca 20091899  T
Q  841 tcttcaagatataccttcattcttcacatcac 872  Q
    ||||||| | ||||||||||||||||| ||||    
T  20091898 tcttcaacaaataccttcattcttcacttcac 20091867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 31701047 - 31701185
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    ||||| |||||| |||||||   |||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  31701047 agagctattaatgtgggttt---cggttataaccaataacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggcttcca 31701143  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  31701144 tcttcaacaaataccttcattcttcacttcacctcttttctt 31701185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 23144107 - 23144249
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaa-tgatctaggacttgttttaggctataaataagcttcc 839  Q
    |||| ||||||| | |||||||||| ||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||| |||||||| ||||||    
T  23144107 agagtcattaatgtaggtttggacgattacaaccactaacatgttttcattgactgtagtaaatgacctaggacttgttttaggttataaataggcttcc 23144206  T
Q  840 atcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||||||| | ||||||||||||||||| |||||| |||||||    
T  23144207 atcttcaacaaataccttcattcttcacttcacctcttttctt 23144249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 627512 - 627371
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||| ||| | | |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| |    
T  627512 agagccatcaatgtagctttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttcta 627413  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | |||||||||||||||||  ||||| |||||||    
T  627412 tcttcaacaaataccttcattcttcactccacctcttttctt 627371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 758 - 882
Target Start/End: Original strand, 586428 - 586552
Alignment:
Q  758 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 857  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| |||||||| | |||||||    
T  586428 tttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttctatcttcaacaaatacctt 586527  T
Q  858 cattcttcacatcaccttttttctt 882  Q
    ||||||||||  ||||| |||||||    
T  586528 cattcttcactccacctcttttctt 586552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 775 - 885
Target Start/End: Complemental strand, 32947183 - 32947073
Alignment:
Q  775 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 874  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| | ||||||||||||||||| ||||||    
T  32947183 actaacacgttttcattgactgtattaatgacctaggacttgttttaggctataagtaggcttctatcttcaacaaataccttcattcttcacttcacct 32947084  T
Q  875 tttttcttaca 885  Q
     ||||||||||    
T  32947083 cttttcttaca 32947073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 730 - 773
Target Start/End: Original strand, 42131889 - 42131932
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac 773  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42131889 cggaaagattcagagccattaatatgggtttggacggttacaac 42131932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 781 - 880
Target Start/End: Complemental strand, 28284548 - 28284449
Alignment:
Q  781 acgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttc 880  Q
    |||||||  ||||| ||| | |||||||||||| ||||||||||| |||||| | || ||||||||| | || |||||||||||||| |||||| |||||    
T  28284548 acgttttatttgaccgtagttatgatctaggacatgttttaggctgtaaataggtttgcatcttcaacaaattccttcattcttcacttcacctcttttc 28284449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 741 - 791
Target Start/End: Original strand, 13546259 - 13546309
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcatt 791  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||    
T  13546259 agagccattaatgtgtgtttggacggttacaaccactaacagcttttcatt 13546309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 741 - 791
Target Start/End: Complemental strand, 13678214 - 13678164
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcatt 791  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||    
T  13678214 agagccattaatgtgtgtttggacggttacaaccactaacagcttttcatt 13678164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 804 - 885
Target Start/End: Complemental strand, 11457100 - 11457019
Alignment:
Q  804 gatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| ||||||||||||| |||||| | |||||||||||||| | ||  |||| || ||||| | |||| ||||||||||    
T  11457100 gatctatgacttgttttaggttataaacaggcttccatcttcaacaaatttcttcctttttcacttaacctcttttcttaca 11457019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 9e-57; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 27114453 - 27114301
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  27114453 cggaaagattcagagccattaatgtgggtttggacggttacaaccaccaacacgttttcattgactgtattaatgacataggacttgttttaggctataa 27114354  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| |||||||||||||| | ||| ||||||||||||| |||||| |||||||    
T  27114353 ataggcttccatcttcaacaaatatcttcattcttcacttcacctcttttctt 27114301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 8734842 - 8734688
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8734842 cggaaagattcagagccattaatgtgggtttggacgattacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 8734743  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||| ||||||||| | || | ||||||||||||||||| |||||| ||||||||||    
T  8734742 ataggcttccatc-tgaacaaataccttcattcttcacttcacctcttttcttaca 8734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 733 - 882
Target Start/End: Complemental strand, 37012970 - 37012821
Alignment:
Q  733 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaata 832  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  37012970 aaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtatgaatgacctagaacttgttttaggctataaata 37012871  T
Q  833 agcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
     |||||||||||||| | |||| |||||||||||| |||||| |||||||    
T  37012870 ggcttccatcttcaacaaatactttcattcttcacttcacctcttttctt 37012821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 729 - 885
Target Start/End: Original strand, 13822057 - 13822216
Alignment:
Q  729 tcggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggct 825  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13822057 tcggaaagattcagagccattaatgtggatttgaacggttacaacaaccactaacacgttttcattgactgtattaatgatctatgacttgttttaggct 13822156  T
Q  826 ataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||||| | |||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  13822157 ataaataggtttccatcttcaacaaataccttcattcttcacctcacctcttttcttaca 13822216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 37030261 - 37030402
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||    
T  37030261 agagccattaatgtgggtttggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagacttcca 37030360  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  37030361 tcttcaacaaataccttcattcttcacttcacctcttttctt 37030402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 8197560 - 8197402
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    |||||||||| |||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  8197560 cggaaagatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagacta 8197461  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| |||||||||||||| | ||||||||||||||||| | |||| ||||||||||    
T  8197460 taaataggcttccatcttcaacaaataccttcattcttcactttacctattttcttaca 8197402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 12785306 - 12785148
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12785306 cggaaagattcatagccgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 12785207  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| ||||| |||||||| | ||||||||||||||||| |||||| ||||||||||    
T  12785206 taaataggcttcaatcttcaacaaataccttcattcttcacttcacctcttttcttaca 12785148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 733 - 885
Target Start/End: Complemental strand, 18809130 - 18808975
Alignment:
Q  733 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    |||||||||||||||||||| | ||||||||||||||||||   |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  18809130 aaagattcagagccattaatgtaggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 18809031  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||  ||||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  18809030 atagtcttccatcttcaacaaataccttcattcttcacttcacctcttttcttaca 18808975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 3556770 - 3556618
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||| ||||| ||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3556770 cggaaagattcggagccgttattgtgggtttggacgattacaagcactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 3556671  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| ||||||||||| || | || |||||||||||||| |||||| |||||||    
T  3556670 atatgcttccatctttaacaaattccttcattcttcacttcacctcttttctt 3556618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 730 - 885
Target Start/End: Complemental strand, 12723823 - 12723665
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    |||||||||||| || | ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12723823 cggaaagattcatagtcgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 12723724  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| | || ||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  12723723 taaataggttttcatcttcaacaaataccttcattcttcacttcacctcttttcttaca 12723665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 26279172 - 26279031
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||    
T  26279172 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacccaggacttgttttaggctataaataggcttcca 26279073  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  26279072 tcttcaacaaataccttcattcttcacttcacttcttttctt 26279031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 741 - 882
Target Start/End: Complemental strand, 37883562 - 37883421
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||| ||| ||||||||||| |||||||||| |||||||    
T  37883562 agagccattaatgtgggtttggacggttacaaccactaacatgttttcattgactatagtaatgacctaagacttgttttaagctataaataggcttcca 37883463  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  37883462 tcttcaacaaataccttcattcttcacttcacatcttttctt 37883421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 38679438 - 38679596
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| ||| |||||||||||||||   |||||||||| ||| ||||||||||||||||||  |||||||||||||||||||    
T  38679438 cggaaagattcagagccattaatgtggatttggacggttacaacaaccactaacacttttgcattgactgtattaatgacttaggacttgttttaggcta 38679537  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| ||||| |||||||| | ||| || |||||||||| |||||| ||||||||||    
T  38679538 taaataggcttcaatcttcaacaaatatctacattcttcacttcacctcttttcttaca 38679596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 25977135 - 25977272
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||| |||||||    
T  25977135 agagtcattaatgtaggtttggacgattacaaccactaacacgttttcattgactgtagtaatgacttaggacttgttttaggttataaataggcttcca 25977234  T
Q  841 tcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||||||    | ||||||||||||||| |||||| |||||||    
T  25977235 tcttca----acaccttcattcttcacttcacctcttttctt 25977272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 756 - 882
Target Start/End: Original strand, 9715327 - 9715453
Alignment:
Q  756 ggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacc 855  Q
    ||||||||||||||||||||| ||||||||||||||||||| | |||||| ||| ||||| ||||||||||||||||  ||||||||||||| | ||| |    
T  9715327 ggtttggacggttacaaccaccaacacgttttcattgactgcactaatgacctatgactttttttaggctataaatagacttccatcttcaacaaatagc 9715426  T
Q  856 ttcattcttcacatcaccttttttctt 882  Q
    |||||||||||| |||||| |||||||    
T  9715427 ttcattcttcacttcacctcttttctt 9715453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 741 - 882
Target Start/End: Original strand, 11719938 - 11720080
Alignment:
Q  741 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 840  Q
    |||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||  ||| ||    
T  11719938 agagccattaatgtaggtttgaacggttacgaccactaacacgttttcattgactgtactaatgacctaggacttattttaggccataaatagactttca 11720037  T
Q  841 tcttcaagatataccttcattc-ttcacatcaccttttttctt 882  Q
    ||||||| | |||||||||||| ||||| |||||| |||||||    
T  11720038 tcttcaacaaataccttcattctttcacttcacctcttttctt 11720080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 732 - 882
Target Start/End: Original strand, 16513581 - 16513733
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggtt--acaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||| | ||| |||| ||| |   |||||||||||||||||||||| |||||||||||||| ||| |||||||||||  ||||||    
T  16513581 gaaagattcagagccattattgtggttttgtacgttacaacaaccactaacacgttttcatcgactgtattaatgacctatgacttgttttaaactataa 16513680  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    ||| ||||| || ||||| | ||||||||||||||||| |||||| |||||||    
T  16513681 ataggcttcaattttcaacaaataccttcattcttcacttcacctcttttctt 16513733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 730 - 832
Target Start/End: Original strand, 8299208 - 8299313
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||   ||| |||||||||| ||||||||||||||||| ||| || |||||||||||||    
T  8299208 cggaaagattcagagtcattaatttgggtttgaacggttacaacaaccaccaacacgtttttattgactgtattaatgacctaagaattgttttaggcta 8299307  T
Q  827 taaata 832  Q
    ||||||    
T  8299308 taaata 8299313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 817 - 885
Target Start/End: Complemental strand, 15858880 - 15858812
Alignment:
Q  817 ttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  15858880 ttttaggctataaataggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttaca 15858812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 795 - 884
Target Start/End: Complemental strand, 23252558 - 23252469
Alignment:
Q  795 tgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    |||| |||| || |||||||| |||||| |||||||||| ||| |||||| || | || |||||||||||||| | |||| |||||||||    
T  23252558 tgtaataattatttaggacttattttagactataaataaacttgcatcttaaacaaattccttcattcttcactttacctcttttcttac 23252469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 779 - 885
Target Start/End: Complemental strand, 27495261 - 27495155
Alignment:
Q  779 acacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttt 878  Q
    |||||||||  ||||||||| | || | ||| |||| |||| ||||||||||||  ||| ||||||||| |  |  ||||||||||||| |||||| |||    
T  27495261 acacgttttagttgactgtaattattacctatgactggtttaaggctataaatagactttcatcttcaacaattttcttcattcttcacttcacctcttt 27495162  T
Q  879 tcttaca 885  Q
    |||||||    
T  27495161 tcttaca 27495155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 829 - 882
Target Start/End: Original strand, 2606076 - 2606129
Alignment:
Q  829 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||| |||||||||||||| | ||||||||||||||||| |||| | |||||||    
T  2606076 aataggcttccatcttcaacaaataccttcattcttcacttcacatcttttctt 2606129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 6e-52; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 742 - 882
Target Start/End: Complemental strand, 31318671 - 31318531
Alignment:
Q  742 gagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccat 841  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |||    
T  31318671 gagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggctttcat 31318572  T
Q  842 cttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||||| | ||||||||||||||||| |||||| |||||||    
T  31318571 cttcaacaaataccttcattcttcacttcacctcttttctt 31318531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 885
Target Start/End: Original strand, 31722857 - 31723015
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    ||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31722857 cggaaagattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 31722956  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||||| |||||||||||||| | | ||||||||||||||| ||| || ||||||||||    
T  31722957 taaataggcttccatcttcaacaaagaccttcattcttcacttcatctcttttcttaca 31723015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 732 - 882
Target Start/End: Complemental strand, 31271496 - 31271346
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 831  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  31271496 gaaagattcagagccattaatgtgggtttggacgattacaaccacttacacgttttcattaactgtattaatgacctatgacttgttttaggctataaat 31271397  T
Q  832 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    | |||||||||||||| | |||| |||||| ||||| |||||| |||||||    
T  31271396 aggcttccatcttcaacaaatactttcatttttcacttcacctcttttctt 31271346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 730 - 879
Target Start/End: Original strand, 9304942 - 9305091
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9304942 cggaaagattcagagccattattgtgggttttgacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 9305041  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcacctttttt 879  Q
    ||| ||||  | ||| || | |||||||||||| |||| |||||| ||||    
T  9305042 ataggcttttaccttaaacaaataccttcattcatcacttcacctctttt 9305091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 733 - 885
Target Start/End: Complemental strand, 439180 - 439025
Alignment:
Q  733 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||| || ||||||| ||||||||||||||||||||   ||||||||||||||| |||||| || |||||| |||||||||||||||||||||||    
T  439180 aaagattcaaagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcgttgactatactaatgacctaggacttgttttaggctataa 439081  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||  ||||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  439080 atagacttccatcttcaacaaataccttcattcttcacttcacctcttttcttaca 439025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 730 - 882
Target Start/End: Complemental strand, 16395467 - 16395312
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 826  Q
    |||||| ||||| |||||||||| |||||||||| |||||||||   |||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  16395467 cggaaatattcaaagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactatattaatgacataggacttgttttaggcta 16395368  T
Q  827 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||||| ||||||||| |||| | |||| |||||||||||| |||||| |||||||    
T  16395367 taaataggcttccatcgtcaacaaatactttcattcttcacttcacctcttttctt 16395312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 732 - 882
Target Start/End: Complemental strand, 303904 - 303751
Alignment:
Q  732 gaaagattcagagccattaatatgggtttggacggtta---caaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 828  Q
    |||| |||||||| ||||||| |  |||||||||||||   ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  303904 gaaacattcagagtcattaatgtaagtttggacggttataacaaccaccaacacgttttcattgattgtattaatgacctaggacttgttttaggctata 303805  T
Q  829 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 882  Q
    |||| |||||||| ||||| | ||||||||||||||||| |||||| |||||||    
T  303804 aataggcttccattttcaacaaataccttcattcttcacttcacctcttttctt 303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 758 - 885
Target Start/End: Complemental strand, 20818653 - 20818526
Alignment:
Q  758 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 857  Q
    ||||||||||||  ||||| |||||||||||||||| |||| | ||||  || ||||| |||||| |||||||||  ||||||||||||| | || ||||    
T  20818653 tttggacggttagcaccacaaacacgttttcattgattgtacttatgacgtatgacttattttagactataaatatacttccatcttcaacaaattcctt 20818554  T
Q  858 cattcttcacatcaccttttttcttaca 885  Q
    ||||||| || |||||| ||||||||||    
T  20818553 cattctttacttcacctcttttcttaca 20818526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 884
Target Start/End: Complemental strand, 17519942 - 17519848
Alignment:
Q  790 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    ||||||||| | |||||||| |||||||||||||||||||||| | || ||| ||||||| || ||| |||||||||| ||| || ||| |||||    
T  17519942 ttgactgtagttatgatctatgacttgttttaggctataaatatgtttgcatgttcaagaaattcctccattcttcacttcatctctttccttac 17519848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 730 - 880
Target Start/End: Complemental strand, 1804 - 1654
Alignment:
Q  730 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 829  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||||  || | |||||||||| ||||||    
T  1804 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 1705  T
Q  830 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttc 880  Q
    ||| ||||||| |||||| | ||||||||||||||||  |||||| |||||    
T  1704 ataggcttccaacttcaacaaataccttcattcttcagttcacctattttc 1654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 786 - 885
Target Start/End: Original strand, 19067 - 19166
Alignment:
Q  786 ttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    ||||||||||||| | |||| ||| |||||||||||||||||||||| |||  ||||||||| | || |||||||||||||| ||| || ||||||||||    
T  19067 ttcattgactgtacttatgacctaagacttgttttaggctataaataggctctcatcttcaacaaattccttcattcttcacttcaactcttttcttaca 19166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 802 - 884
Target Start/End: Original strand, 17301 - 17383
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    ||||||||||||||||||||||||||||||| | ||  |||||||| | || | |||||||||||| |||||| |||||||||    
T  17301 atgatctaggacttgttttaggctataaataggtttgtatcttcaacaaattctttcattcttcacttcacctattttcttac 17383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 802 - 884
Target Start/End: Complemental strand, 51916 - 51836
Alignment:
Q  802 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 884  Q
    ||||||||||||||||||||||||||||||| | || ||||||||  | || ||||||||||| || |||||| |||||||||    
T  51916 atgatctaggacttgttttaggctataaataggtttgcatcttca--acattccttcattcttaacttcacctcttttcttac 51836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 790 - 885
Target Start/End: Original strand, 8159 - 8254
Alignment:
Q  790 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 885  Q
    |||| |||||| ||||||||||||| |||| ||||||||| || ||||  ||||| || |  | |||||||||||||| |||||| ||||||||||    
T  8159 ttgattgtatttatgatctaggactggtttaaggctataactaggcttggatctttaacaatttccttcattcttcacttcacctcttttcttaca 8254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 778 - 884
Target Start/End: Original strand, 427220 - 427326
Alignment:
Q  778 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 877  Q
    ||||||||||  ||||||| | | ||||||||||| | || | |||||||||||| |||| ||||||||| |  | |||||||||||||| |||||| ||    
T  427220 aacacgttttatttgactgcacttatgatctaggaatggtctaaggctataaataggcttgcatcttcaacaatttccttcattcttcacttcacctctt 427319  T
Q  878 ttcttac 884  Q
    || ||||    
T  427320 ttgttac 427326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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