View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5856-Insertion-8 (Length: 511)

Name: NF5856-Insertion-8
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5856-Insertion-8
NF5856-Insertion-8
[»] chr3 (1 HSPs)
chr3 (9-511)||(53457995-53458497)


Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Original strand, 53457995 - 53458497
Alignment:
Q  9 aatttagcatgaggttcagaaccaggagtaagaacatgatcgagaaaagaagatataacagaagctgttaatttcttcctcaatgcaattgtaagacgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53457995 aatttagcatgaggttcagaaccaggagtaagaacatgatcgagaaaagaagatataacagaagctgttaatttcttcctcaatgcaattgtaagacgaa 53458094  T
Q  109 cagcacgagcaattctacgaacttccttcgagtacgaaccggtctcgataacggatgctatctccttcaaatctatgaatcacaattccaaaattcacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53458095 cagcacgagcaattctacgaacttccttcgagtacgaaccggtctcgataacggacgctatctccttcaaatctatgaatcacaattccaaaattcacaa 53458194  T
Q  209 attnnnnnnnnnnnnnnnnnnnttgagatgtgaaatcgatagacggagattcttacgctgcaaagtagatggaactggtggagaaacggaattcgaagga 308  Q
    |||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53458195 attaaaaacggaaaaaagaaaattgagatgtgaaatcgatagacggagattcttacgctgcaaagtagatggaactggtggagaaacggaattcgaagga 53458294  T
Q  309 gttgaacgatctttcatctcaagatcttgagtcattgtgaacgaaattgagcgaaattgggcgaaaattgggagattttgattnnnnnnnccctaacaag 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  53458295 gttgaacgatctttcatctcaagatcttgagtcattgtgaacgaaattgagcgaaattgggcgaaaattgggagattttgattaaaaaaaccctaacaag 53458394  T
Q  409 tgaagaagaccaaacaagaagcaacgtggtcacaaactcactgagagctttttccgaagctaaaacgcatcgttgcacactttttaatttcttttcttta 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53458395 tgaagaagaccaaacaagaagcaacgtggtcacaaactcactgagagctttttccgaagctaaaacgcatcgttgcacgctttttaatttcttttcttta 53458494  T
Q  509 taa 511  Q
    |||    
T  53458495 taa 53458497  T

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