View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5856_high_2 (Length: 447)
Name: NF5856_high_2
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5856_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 34 - 433
Target Start/End: Complemental strand, 7431955 - 7431555
Alignment:
| Q |
34 |
aatatttttggatgtgtttccacagtaacttgtgatgcaagctagctttgttacttggatacttttactataaataggtatccattacttatattttgac |
133 |
Q |
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| T |
7431955 |
aatatttttggatgtgtttgcatagtaacttgtaatgcaagctagcttagttacttggatacttttactataaataggtatccattacttgtattttgac |
7431856 |
T |
|
| Q |
134 |
agttgaataatacaaaacc-tttttcccttacaactaatacaatggaggtcattgatcgagttaagtgtttatcttggtcttactttgtatgtagagaag |
232 |
Q |
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| T |
7431855 |
agttgaataatacaaaaccctttttcccttacaactaatacaatggaggtggttgatcgagttaagtgtttatcttggtcttagtttgtatgtagagaag |
7431756 |
T |
|
| Q |
233 |
gtagaaataaaaacttagtttttaccggattggtggacaaatccattcttatgtattcaatgtttgaattgattcttttgtaatggggttagagtaaccc |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7431755 |
gtagaaataaaaacttagtttttaccggattggtggacaaatccattcttatgtattcaatgtttgaattgattctttcgtaatggggttagagtaaccc |
7431656 |
T |
|
| Q |
333 |
atgtactcgattgaatacaaatttgcttataagaaaagttgtgattagggtttgaacgtaaagatctaattacaatttgtttaaagttcataaacctaat |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7431655 |
atgtactcgattgaatacaaatttgcttataagaaaagttgtgattagggtttgaacgtaaagatctaattataatttgtttaaagttcataaacctaat |
7431556 |
T |
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| Q |
433 |
t |
433 |
Q |
| |
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| T |
7431555 |
t |
7431555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 16862447 - 16862558
Alignment:
| Q |
56 |
cagtaacttgtgatgcaagctagctttgttacttggatacttttactataaataggtatccattacttatattttgacagttgaataatacaaaa-cctt |
154 |
Q |
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| T |
16862447 |
cagtaacttgtaatacaagctagcttagttacttggatacttttactataaataggtatccattacttgtattttgacagttgaaaaatacaaaatcatt |
16862546 |
T |
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| Q |
155 |
tttcccttacaa |
166 |
Q |
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|||||||||||| |
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| T |
16862547 |
tttcccttacaa |
16862558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 16866693 - 16866789
Alignment:
| Q |
54 |
cacagtaacttgtgatgcaagctagctttgttacttggatacttttactataaataggtatccattacttatattttgacagttgaataatacaaaa |
150 |
Q |
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| T |
16866693 |
cacagtaacttgtaatgcaagctaacttagttacttggatacttttactataaataggtattcattacttgtattttgaaagttgaaaaatacaaaa |
16866789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 27981299 - 27981238
Alignment:
| Q |
56 |
cagtaacttgtgatgcaagctagctttgttacttggatacttttactataaataggtatcca |
117 |
Q |
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|||| |||||| | |||||||| ||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
27981299 |
cagttacttgtaaagcaagctaacttagttacttggatgcttttgctataaataggtatcca |
27981238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 28038601 - 28038540
Alignment:
| Q |
56 |
cagtaacttgtgatgcaagctagctttgttacttggatacttttactataaataggtatcca |
117 |
Q |
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|||| |||||| | |||||||| ||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
28038601 |
cagttacttgtaaagcaagctaacttagttacttggatgcttttgctataaataggtatcca |
28038540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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