View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5856_high_9 (Length: 241)
Name: NF5856_high_9
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5856_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 44957975 - 44958112
Alignment:
| Q |
19 |
caagagtaatttaataagcatgggctaattactagaaaaaggttttactatgcacattgaacacaaccaaatataagtttttgaagttgaattaatataa |
118 |
Q |
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| T |
44957975 |
caagagtaatttaataagcatgggctaattactacaaaaaggttttactatgcacattgaacacaaccaaatataagtttttgaagttgaattaatataa |
44958074 |
T |
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| Q |
119 |
gagaattctaattaagagctcctatatctcataatagaatat |
160 |
Q |
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| T |
44958075 |
gagaattc----taagagctcctatatctcataatagaatat |
44958112 |
T |
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Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 44958306 - 44958394
Alignment:
| Q |
153 |
tagaatatttcaagtccaaatcaatgcaactaaatttcactattttgcaactgaggtaattgatgatgtaacatggttgtggtaccttg |
241 |
Q |
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| T |
44958306 |
tagaatatttcaagtccaaatcaatgcaactaaatttcactattttgcaactgaggtaattgatgatgtaacatggttgtggtaccttg |
44958394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 32561485 - 32561428
Alignment:
| Q |
45 |
aattactagaaaaaggttttactatgcacattgaacacaaccaaatataagtttttga |
102 |
Q |
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| T |
32561485 |
aattactagaaaatggttttactatgcatcttgaacacaatcaaattaaagtttttga |
32561428 |
T |
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