View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5856_low_3 (Length: 431)
Name: NF5856_low_3
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5856_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 26842353 - 26842697
Alignment:
| Q |
1 |
actttctctgttttctaatatggaaggtttcttaa--tcttcatgcgnnnnnnngtagtttataattgtttgattaagtggctattgatttcacaattgt |
98 |
Q |
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| T |
26842353 |
actttctctgttttctaacatggaaggtttcttaacattttcatgcgtttttttgtagtttataattgtttgattaagtggctattgatttcacaattgt |
26842452 |
T |
|
| Q |
99 |
ttatggtgttgatttttgttttgataatctgacttatacccaatttagaagttatcttgatatagatcctgaaagcactatccttcaaatatataccatg |
198 |
Q |
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| T |
26842453 |
ttatggtgttgatttttgttttgataatctgacttatatccaatttataagttatcttgatatagatcctgaaagcactatccttcaaatatataccatg |
26842552 |
T |
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| Q |
199 |
atctattgttttattctaaatttctaacgtgcatgcaaagaaaccgtgtgtacatttggcaatattttcatatagtccctaaagtgactatatagtgcaa |
298 |
Q |
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| T |
26842553 |
atctattgttttattctaaatttctaacgtacatgcaaagaaacagtgtgtacatttggcaatattttcacatagtccctaaagtgactatatagtgcaa |
26842652 |
T |
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| Q |
299 |
attgaactaaatctcttatatgcatgagtggattatttacatgta |
343 |
Q |
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| T |
26842653 |
attgaactaaatctcttatatgcatgagtggattacttacatgta |
26842697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 26842872 - 26842955
Alignment:
| Q |
335 |
ttacatgtacatgtttatgtattgaatgtatcatatatacgcccttgaactactattctgaaagcacttattttatttgtagaa |
418 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26842872 |
ttacatgtatatgtttatgtattgaaagtatcatatatacgcccttgaactactattctgaaagcacttattttatttgtagaa |
26842955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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