View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5856_low_5 (Length: 358)
Name: NF5856_low_5
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5856_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 50832254 - 50831921
Alignment:
| Q |
17 |
aaacttcaatctgctaatcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832254 |
aaacttcaatctgctaatcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaata |
50832155 |
T |
|
| Q |
117 |
atgtgacaaagaaagctgctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaaatgtaatttctttggactatgaaaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832154 |
atgtgacaaagaaagctgctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaaatgtaatttctttggactatgaaaat |
50832055 |
T |
|
| Q |
217 |
gcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttcccaatannnnnnnagt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
50832054 |
gcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttcctaatatttttttagt |
50831955 |
T |
|
| Q |
317 |
ctcacagcttcttatcatactctgatcttcattt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
50831954 |
ctcacagcttcttatcatactctgatcttcattt |
50831921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 50843599 - 50843932
Alignment:
| Q |
17 |
aaacttcaatctgctaatcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50843599 |
aaacttcaatctgctaatcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaata |
50843698 |
T |
|
| Q |
117 |
atgtgacaaagaaagctgctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaaatgtaatttctttggactatgaaaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50843699 |
atgtgacaaagaaagctgctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaaatgtaatttctttggactatgaaaat |
50843798 |
T |
|
| Q |
217 |
gcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttcccaatannnnnnnagt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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|
| T |
50843799 |
gcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttcctaatatttttttagt |
50843898 |
T |
|
| Q |
317 |
ctcacagcttcttatcatactctgatcttcattt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
50843899 |
ctcacagcttcttatcatactctgatcttcattt |
50843932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 32791890 - 32791834
Alignment:
| Q |
20 |
cttcaatctgctaatcagttgtgattatgttaatttgcattggaatccatttctaaa |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32791890 |
cttcaatctgctaatcagttgtgattatgttaatttgcattggaatccatttctaaa |
32791834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 5574987 - 5574880
Alignment:
| Q |
199 |
tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct |
298 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||| | ||||| | ||||||||| ||||||| | || |||||||||||||||||||||| |||| |
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|
| T |
5574987 |
tctttggactatgaaaatgcattagcgagcaagacaaattttattttacagccatatatatgtttttaccatagctttagtatttgtatgttcactagct |
5574888 |
T |
|
| Q |
299 |
tcccaata |
306 |
Q |
| |
|
||| |||| |
|
|
| T |
5574887 |
tcctaata |
5574880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 24534053 - 24533946
Alignment:
| Q |
17 |
aaacttcaatctgctaatcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24534053 |
aaacttcaatctgctaatcagttgtgattatgttaatttgcattggaatccatttctaaaattaaattaattataaggaaagggatatccatttctaata |
24533954 |
T |
|
| Q |
117 |
atgtgaca |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
24533953 |
atgtgaca |
24533946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 199 - 306
Target Start/End: Original strand, 42318736 - 42318843
Alignment:
| Q |
199 |
tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct |
298 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||| |
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|
| T |
42318736 |
tctttggactattaaaatgcattagagagcaagaccaatgtcattttgctgccatatatatgtttttcccatagctttagtatttttatgttcacaagct |
42318835 |
T |
|
| Q |
299 |
tcccaata |
306 |
Q |
| |
|
||| |||| |
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|
| T |
42318836 |
tcctaata |
42318843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 45241071 - 45240964
Alignment:
| Q |
199 |
tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||| | || ||||||||| ||||||||||||| |
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|
| T |
45241071 |
tctttggactatgaaaatgcatcagagagcaacaccaatgtcattttgctgccatatatatgtttttcccgtagcattagtatttttatgttcacaagca |
45240972 |
T |
|
| Q |
299 |
tcccaata |
306 |
Q |
| |
|
||| |||| |
|
|
| T |
45240971 |
tcctaata |
45240964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 31662380 - 31662273
Alignment:
| Q |
199 |
tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct |
298 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||| |
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|
| T |
31662380 |
tctttggactattaaaatgcattagagagcaagaccaatgtcattttgctgccatatatatgtttttcccatagctttagtatttttatgttcacaagct |
31662281 |
T |
|
| Q |
299 |
tcccaata |
306 |
Q |
| |
|
||| |||| |
|
|
| T |
31662280 |
tcctaata |
31662273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 6672091 - 6672196
Alignment:
| Q |
201 |
tttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||||||||| || |
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|
| T |
6672091 |
tttggactatgaaaatgcattagagagcaacaccaatgtcattttgctgccatatatatgtttttcccatagctttagtatttttatgttcacaagcatc |
6672190 |
T |
|
| Q |
301 |
ccaata |
306 |
Q |
| |
|
| |||| |
|
|
| T |
6672191 |
ctaata |
6672196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 21123312 - 21123356
Alignment:
| Q |
201 |
tttggactatgaaaatgcattagagagcaagaacaatgtcatttt |
245 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
21123312 |
tttggactatgaaaatgcattagagaacaagaccgatgtcatttt |
21123356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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