View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5856_low_8 (Length: 247)
Name: NF5856_low_8
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5856_low_8 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 3509362 - 3509587
Alignment:
| Q |
16 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttcatttacgtaatgagnnnnnnnnnnnngtcgatttaggaattgatctttgggtaa |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
3509362 |
aagtatactttttgaacttaagaaagattatttgaaagcattgttcatttacgtaatgagttttttt-----gttgatttaggaattgatctttgggtaa |
3509456 |
T |
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| Q |
116 |
attttctttgaaaacgtgattgttggaggtacactactaactcagttgagtgaaacaaattttatcatcaaatacttaaaaatattatcttacatgtctt |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |
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| T |
3509457 |
attttctttgaaaatgtgattgttggaggtacactactaactgagttgagtgaaacaagttttatcatcaaatactt-aaaagattatcttacatgtctt |
3509555 |
T |
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| Q |
216 |
taccttttggacttaattttaaagaggtagtc |
247 |
Q |
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||||||||||||||||||||| ||| |||||| |
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| T |
3509556 |
taccttttggacttaattttacagaagtagtc |
3509587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 9892 - 10117
Alignment:
| Q |
16 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttcatttacgtaatgagnnnnnnnnnnnngtcgatttaggaattgatctttgggtaa |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
9892 |
aagtatactttttgaacttaagaaagattatttgaaagcattgttcatttacgtaatgagttttttt-----gttgatttaggaattgatctttgggtaa |
9986 |
T |
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| Q |
116 |
attttctttgaaaacgtgattgttggaggtacactactaactcagttgagtgaaacaaattttatcatcaaatacttaaaaatattatcttacatgtctt |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| || |||||||||||||| |
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| T |
9987 |
attttctttgaaaatgtgattgttggaggtacactactaactgagttgagtgaaacaagttttatcatcaaatactt-aaaagatcatcttacatgtctt |
10085 |
T |
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| Q |
216 |
taccttttggacttaattttaaagaggtagtc |
247 |
Q |
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| T |
10086 |
tatcttttggacttaattttacagaagtagtc |
10117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 16421180 - 16421405
Alignment:
| Q |
16 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttcatttacgtaatgagnnnnnnnnnnnngtcgatttaggaattgatctttgggtaa |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
16421180 |
aagtatactttttgaacttaagaaagattatttgaaagcattgttcatttacgtaatgagttttttt-----gttgatttaggaattgatctttgggtaa |
16421274 |
T |
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| Q |
116 |
attttctttgaaaacgtgattgttggaggtacactactaactcagttgagtgaaacaaattttatcatcaaatacttaaaaatattatcttacatgtctt |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| || |||||||||||||| |
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| T |
16421275 |
attttctttgaaaatgtgattgttggaggtacactactaactgagttgagtgaaacaagttttatcatcaaatactt-aaaagatcatcttacatgtctt |
16421373 |
T |
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| Q |
216 |
taccttttggacttaattttaaagaggtagtc |
247 |
Q |
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|| |||||||||||||||||| ||| |||||| |
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| T |
16421374 |
tatcttttggacttaattttacagaagtagtc |
16421405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 5537542 - 5537409
Alignment:
| Q |
91 |
gatttaggaattgatctttgggtaaattttctttgaaaacgtgattgttggaggtacactactaactcagttgagtgaaacaaattttatcatcaaatac |
190 |
Q |
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| T |
5537542 |
gatttaggaattgatctttgggtaaattttctttgaaaacgtgattgttg------------------agttgagtgaaacaagttttatcatcaaata- |
5537462 |
T |
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| Q |
191 |
ttaaaaatattatcttacatgtctttaccttttggacttaattttaaagaggtagtc |
247 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
5537461 |
----aaagattatcttacatgtctttaccttttgaacttaattttaaagaagtagtc |
5537409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 5537587 - 5537537
Alignment:
| Q |
16 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttcattta |
66 |
Q |
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| T |
5537587 |
aagtatactttttgaacttaagaatgattatttgaaagcattgttgattta |
5537537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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