View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5856_low_9 (Length: 247)
Name: NF5856_low_9
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5856_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 3961198 - 3961314
Alignment:
| Q |
124 |
ctgttacaaaggaacattaaactcactgtaaggtcaactgatgttacttcttccttctactagacagtacaggtcaagaggatgaagtttcaacatatag |
223 |
Q |
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| T |
3961198 |
ctgttacaaaggaccattaaactcactgtaaggtcaactgatgttacttcttccttctactagacagcacaggtcaagaggaagaagtttcaacatatag |
3961297 |
T |
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| Q |
224 |
gagcaagagtataatct |
240 |
Q |
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| T |
3961298 |
gaacaagagtataatct |
3961314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 3961087 - 3961163
Alignment:
| Q |
20 |
tgcttcttccatatatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgcttccaa |
96 |
Q |
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| T |
3961087 |
tgcttcttccatatatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgcttccaa |
3961163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 3806575 - 3806474
Alignment:
| Q |
142 |
aaactcactgtaaggtcaactgatgttacttcttcct---tctactagacagtacaggtcaagaggatgaagtttcaacatataggagcaagagtataat |
238 |
Q |
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| T |
3806575 |
aaactcacggtaaggtcaactgaaatgacttcttcctccttctattagacaatacaggtcaagaaggtgaagtttcaacatataggagaaagagtataat |
3806476 |
T |
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| Q |
239 |
ct |
240 |
Q |
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|| |
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| T |
3806475 |
ct |
3806474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 3813218 - 3813117
Alignment:
| Q |
142 |
aaactcactgtaaggtcaactgatgttacttcttcct---tctactagacagtacaggtcaagaggatgaagtttcaacatataggagcaagagtataat |
238 |
Q |
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| T |
3813218 |
aaactcacggtaaggtcaactgaaatgacttcttcctccttctattagacaatacaggtcaagaaggtgaagtttcaacatataggagaaagagtataat |
3813119 |
T |
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| Q |
239 |
ct |
240 |
Q |
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|| |
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| T |
3813118 |
ct |
3813117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 3950871 - 3950931
Alignment:
| Q |
32 |
atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt |
92 |
Q |
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| T |
3950871 |
atatgggagaaagttgaatcagatctctagcagccaaaacattgaaggtcagaaattgctt |
3950931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 4028007 - 4027947
Alignment:
| Q |
32 |
atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt |
92 |
Q |
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||||||| |||||| ||| ||||||||||||||||||| |||| ||||| ||||||||||| |
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| T |
4028007 |
atatgagtgaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctt |
4027947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 3914300 - 3914345
Alignment:
| Q |
20 |
tgcttcttccatatatgagagaaagttgaaacagatctctagcagc |
65 |
Q |
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| T |
3914300 |
tgcttcttccatatttgagataaagttgaaacagatctatagcagc |
3914345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 3925597 - 3925637
Alignment:
| Q |
20 |
tgcttcttccatatatgagagaaagttgaaacagatctcta |
60 |
Q |
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| T |
3925597 |
tgcttcttccatatatgagataaagttgaaacatatctcta |
3925637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 4014384 - 4014324
Alignment:
| Q |
32 |
atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt |
92 |
Q |
| |
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|||||||||||| ||||| ||||||| ||||||| ||| ||||||||||| | |||||||| |
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| T |
4014384 |
atatgagagaaacttgaatcagatctatagcagctaaagcattgaaggtttgaaattgctt |
4014324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 4216009 - 4215953
Alignment:
| Q |
20 |
tgcttcttccatatatgagagaaagttgaaacagatctctagcagccaaatcattgaag |
78 |
Q |
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| T |
4216009 |
tgcttcttccatat--gatagaaagttgaatcagatctctagcggccaaagcattgaag |
4215953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 4221300 - 4221238
Alignment:
| Q |
30 |
atatatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt |
92 |
Q |
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|||||||||| | ||||||| ||||||||||||| |||| |||| ||||| ||||||||||| |
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| T |
4221300 |
atatatgagaaatagttgaatcagatctctagcaaacaaagcatttaaggtcagtaattgctt |
4221238 |
T |
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