View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5858-Insertion-1 (Length: 945)
Name: NF5858-Insertion-1
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5858-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 301 - 923
Target Start/End: Complemental strand, 1246380 - 1245752
Alignment:
| Q |
301 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttatcttgattttcttaatgtgaaatatatttttaatttgataa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246380 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttctcttgattttcttaatgtgaaatatatttttaatttgataa |
1246281 |
T |
|
| Q |
401 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246280 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
1246181 |
T |
|
| Q |
501 |
tatatagaataagacaaaaaagaatacaatttttccaaatgcttattaccatcataatgcttg-tgcaaaaagtttatcagactacaaaacatgaaacct |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
1246180 |
tatatagaataagacaaaaaagaatacaatttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcaaactacaaaacatgaaacct |
1246081 |
T |
|
| Q |
600 |
caaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaaga |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246080 |
caaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaaga |
1245981 |
T |
|
| Q |
700 |
caaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggt |
799 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1245980 |
caaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggt |
1245883 |
T |
|
| Q |
800 |
aagaaggaagtcctctctc-acctgcaagcnnnnnnncctagg-aaaaggctactaatgctaggcattagaa-tttcttccc-ttatccaacttcctcg- |
894 |
Q |
| |
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||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| |
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| T |
1245882 |
aagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgc |
1245783 |
T |
|
| Q |
895 |
ctccatg-tttgt-gaagtgaatgctgcttt |
923 |
Q |
| |
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||||||| ||||| ||||||||||||||||| |
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| T |
1245782 |
ctccatgttttgtggaagtgaatgctgcttt |
1245752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 1247600 - 1247404
Alignment:
| Q |
8 |
aagaacaccatcgttctggaaacttccagaagcgcttcttggatcggtgaggtaactatcgagtgtgtcagagacggtgattggtgaggaatgagaggaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1247600 |
aagaacaccatcgttctggaaacttccagaagcgcttcttgggtcagtgaggtaactatcgagtgtgtcagagacggtgattggtgaggaatgagaggaa |
1247501 |
T |
|
| Q |
108 |
gatgatggcattgtgaatgttaagggttcttctctgtctctgttgttgttacccatcattgtttgtttgagagtgaaaatggtgaagaagaatgaaa |
204 |
Q |
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| T |
1247500 |
gatgatgggattgtgaatgttaagggttcttctctttctctgttgttgttacccatcattgtttgtttgagagtgaaaatggcgaagaagaatgaaa |
1247404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 301 - 923
Target Start/End: Complemental strand, 42011041 - 42010414
Alignment:
| Q |
301 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttatcttgattttcttaatgtgaaatatatttttaatttgataa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011041 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttctcttgattttcttaatgtgaaatatatttttaatttgataa |
42010942 |
T |
|
| Q |
401 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010941 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
42010842 |
T |
|
| Q |
501 |
tatatagaataagacaaaaaagaatacaatttttccaaatgcttattaccatcataatgcttg-tgcaaaaagtttatcagactacaaaacatgaaacct |
599 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||||||||||||| |
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| T |
42010841 |
tatatagaataagacaaaaaagaatacaa-ttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcaaactataaaacatgaaacct |
42010743 |
T |
|
| Q |
600 |
caaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaaga |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42010742 |
caaaattcagcaacaataatctactgcaacattcaatctgaatttgttaccaaactactgatatttcaaaaatcatttccctcatactctatgatgaaga |
42010643 |
T |
|
| Q |
700 |
caaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggt |
799 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42010642 |
caaaaatctgatagcataaaactctactctcacataaatcaacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggt |
42010545 |
T |
|
| Q |
800 |
aagaaggaagtcctctctc-acctgcaagcnnnnnnncctagg-aaaaggctactaatgctaggcattagaa-tttcttccc-ttatccaacttcctcg- |
894 |
Q |
| |
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||||||||||||||||||| |||||||||| |||||| |||| ||||||||| ||||||| ||||| ||||||||| || ||||||||||||| |
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| T |
42010544 |
aagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaagctactaatactaggcaatagaattttcttccctttttccaacttcctcgc |
42010445 |
T |
|
| Q |
895 |
ctccatg-tttgt-gaagtgaatgctgcttt |
923 |
Q |
| |
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||||||| ||||| ||||||||||||||||| |
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| T |
42010444 |
ctccatgttttgtggaagtgaatgctgcttt |
42010414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 42014372 - 42014176
Alignment:
| Q |
8 |
aagaacaccatcgttctggaaacttccagaagcgcttcttggatcggtgaggtaactatcgagtgtgtcagagacggtgattggtgaggaatgagaggaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
42014372 |
aagaacaccatcgttctggaaacttccagaagcgcttcttgggtcggtgaggtaactatcgagtgtgtcagagacggtgatcggtgaggaatgagaggaa |
42014273 |
T |
|
| Q |
108 |
gatgatggcattgtgaatgttaagggttcttctctgtctctgttgttgttacccatcattgtttgtttgagagtgaaaatggtgaagaagaatgaaa |
204 |
Q |
| |
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|||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014272 |
gatgatgggattgtgaatgttaaagattcttctctttctctgttgttgttacccatcattgtttgtttgagagtgaaaatggtgaagaagaatgaaa |
42014176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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