View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5858-Insertion-4 (Length: 617)
Name: NF5858-Insertion-4
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5858-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 424
Target Start/End: Complemental strand, 5638884 - 5638469
Alignment:
| Q |
9 |
taaatttcctttgaaacttgtttcrtgagagcattaattgagtggtgtttaacactagttgaaatataacagtaatccagtaaaattaattagaattttc |
108 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638884 |
taaatttcctttgaaacttgtttcatgagagcattaattgagtggtgtttaacactaattgaaatataacagtaatccagtaaaattaattagaattttc |
5638785 |
T |
|
| Q |
109 |
ttatatattatggaccacaaaccatgactannnnnnnnacttaaatttgagtttggaggaggtaaattcttaatttccacatttacaatctttcttctct |
208 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5638784 |
ttatatattatggaccacaaaccatgactattttttttacttaaatttgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctct |
5638685 |
T |
|
| Q |
209 |
tttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638684 |
tttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgc |
5638585 |
T |
|
| Q |
309 |
agaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatctaacttatcaacctgcagcacataaccactaatcataaacagaagtac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5638584 |
agaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtac |
5638485 |
T |
|
| Q |
409 |
aatttaaaatttattt |
424 |
Q |
| |
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|||||||||||||||| |
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| T |
5638484 |
aatttaaaatttattt |
5638469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 479 - 617
Target Start/End: Complemental strand, 5622206 - 5622068
Alignment:
| Q |
479 |
acatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaacacgatatttt |
578 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
5622206 |
acatactggaactccatagtgttcagtgagacctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacaatatttt |
5622107 |
T |
|
| Q |
579 |
tccttcaatttaatgatctcatctaagggtgctatttgg |
617 |
Q |
| |
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| T |
5622106 |
tccttcaatttaatgatctcatctaagggtgctatttgg |
5622068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 486
Target Start/End: Complemental strand, 5638448 - 5638407
Alignment:
| Q |
445 |
tatacacacccacgcccaaatagaactttttagtacatactg |
486 |
Q |
| |
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| T |
5638448 |
tatacacacccacgcccaaatagaacttttcagtacatactg |
5638407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 477 - 616
Target Start/End: Original strand, 30634587 - 30634726
Alignment:
| Q |
477 |
gtacatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaacacgatatt |
576 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30634587 |
gtacatactggaactccgtagtgttcagtgagacctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaccgatatt |
30634686 |
T |
|
| Q |
577 |
tttccttcaatttaatgatctcatctaagggtgctatttg |
616 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
30634687 |
tttccttcaatttaatgatatcatctaagggtgctatttg |
30634726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 216 - 382
Target Start/End: Original strand, 30634326 - 30634494
Alignment:
| Q |
216 |
tttcagtatacatggaaatccaagaaggtt-atgaa-cagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaat |
313 |
Q |
| |
|
|||||||| || |||||||| ||| |||| ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
30634326 |
tttcagtacacttggaaatctaagttggtttatgaatcagtattacaaatgacactaccatacctggtgatctataactcttgcacttccggtgcagaat |
30634425 |
T |
|
| Q |
314 |
cctccttctgtggccagtgcatgtcccatagcagcagttataagatctaacttatcaacctgcagcaca |
382 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30634426 |
cctccttctgtggccaatgcatgtcccatagcagcagttataagatctaacttctcaacctgcagcaca |
30634494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 477 - 616
Target Start/End: Original strand, 21423373 - 21423512
Alignment:
| Q |
477 |
gtacatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaacacgatatt |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21423373 |
gtacatactggaactccatagtgttcagtgagacctcttccagaacttccaagcacgccaaatgagttgctctcatccagtaaaatacgaaaccgatatt |
21423472 |
T |
|
| Q |
577 |
tttccttcaatttaatgatctcatctaagggtgctatttg |
616 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
21423473 |
tttccttcaatttaatgatatcatctaagggtgctatttg |
21423512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 262 - 382
Target Start/End: Original strand, 21423160 - 21423280
Alignment:
| Q |
262 |
atgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatct |
361 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21423160 |
atgacactaccatacctggtgatctataactcttgcacttccggtgcagaatcctccttctgtggccaatgcatgtcccatagcagcagttataagatct |
21423259 |
T |
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| Q |
362 |
aacttatcaacctgcagcaca |
382 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
21423260 |
aacttctcaacctgcagcaca |
21423280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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