View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5858-Insertion-5 (Length: 511)
Name: NF5858-Insertion-5
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5858-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 231 - 511
Target Start/End: Original strand, 53458217 - 53458497
Alignment:
| Q |
231 |
ttgagatgtgaaatcgatagacggagattcttacgctgcaaagtagatggaactggtggagaaacggaattcgaaggagttgaacgatctttcatctcaa |
330 |
Q |
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| T |
53458217 |
ttgagatgtgaaatcgatagacggagattcttacgctgcaaagtagatggaactggtggagaaacggaattcgaaggagttgaacgatctttcatctcaa |
53458316 |
T |
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| Q |
331 |
gatcttgagtcattgtgaacgaaattgagcgaaattgggcgaaaattgggagattttgattnnnnnnnccctaacaagtgaagaagaccaaacaagaagc |
430 |
Q |
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| T |
53458317 |
gatcttgagtcattgtgaacgaaattgagcgaaattgggcgaaaattgggagattttgattaaaaaaaccctaacaagtgaagaagaccaaacaagaagc |
53458416 |
T |
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| Q |
431 |
aacgtggtcacaaactcactgagagctttttccgaagctaaaacgcatcgttgcacactttttaatttcttttctttataa |
511 |
Q |
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| T |
53458417 |
aacgtggtcacaaactcactgagagctttttccgaagctaaaacgcatcgttgcacgctttttaatttcttttctttataa |
53458497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 53457995 - 53458183
Alignment:
| Q |
9 |
aatttagcatgaggttcagaaccaggagtaagaacatgatcgagaaaggaagatataacagaagctgttaatttcttcctcaatgcaattgtaagacgaa |
108 |
Q |
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| T |
53457995 |
aatttagcatgaggttcagaaccaggagtaagaacatgatcgagaaaagaagatataacagaagctgttaatttcttcctcaatgcaattgtaagacgaa |
53458094 |
T |
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| Q |
109 |
cagcacgagcaattctacgaacttccttcgagtacgaaccggtctcgataacggatgctatctccttcaaatctatgaatcacaattcc |
197 |
Q |
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| T |
53458095 |
cagcacgagcaattctacgaacttccttcgagtacgaaccggtctcgataacggacgctatctccttcaaatctatgaatcacaattcc |
53458183 |
T |
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