View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5858_high_1 (Length: 459)
Name: NF5858_high_1
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5858_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 114 - 441
Target Start/End: Complemental strand, 4820534 - 4820207
Alignment:
| Q |
114 |
agcagaaaagaactgaagataaagcaccttgccccgaaacaatgataacaatgacaaggtaaattgcaaaccaacgttgatatattgttgtttgtttatt |
213 |
Q |
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| T |
4820534 |
agcagaaaagaactgaacataaagcaccttgccccgaaacaatgataacaatgacaaggtaaattgcaaaccaacgttgatatattgttgtttgtttatt |
4820435 |
T |
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| Q |
214 |
tggccagaagtggttttgagttgcagatctcattagcattcgtaccatcatttatcttgtgacaataacttttgattcgcgtttccattattgaaacaat |
313 |
Q |
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| T |
4820434 |
tggccagaagtggttttgagttgcagatctcattagcattcgtaccatcatttatcttgtgacaataacctttgattcgcgtttccattattgaaacaat |
4820335 |
T |
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| Q |
314 |
gttatgatctattcagtttattaacgctgcaccgaaatcaattagagagccatataataatgttacaagccaacatgccagaaataaaaccgaaaagatg |
413 |
Q |
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| T |
4820334 |
gttatgatctattcagtttcttaacgctgcaccgaaatcaattagagagacatataataatgttacaagccaacatgccagaaataaaaccgaaaagatg |
4820235 |
T |
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| Q |
414 |
tgaacaactgtaggtgctatcacgatga |
441 |
Q |
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| T |
4820234 |
tgaacaactgtaggtgctatcacgatga |
4820207 |
T |
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