View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5858_high_6 (Length: 334)
Name: NF5858_high_6
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5858_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 19827534 - 19827388
Alignment:
| Q |
14 |
atatattgcaatctcgtagatcatttcgatctccgctaagctttaaaacaatcaatgatcttaaattcagttgccttatcttgtaaaatttnnnnnnnga |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19827534 |
atatattgcaatctcgtagatcttttcgatctccgctaagctttaaaacaatcaatgatcttaaattcagttgccttatcttgtaaaatttaaaaaaaga |
19827435 |
T |
|
| Q |
114 |
ggatctaatgtacccagcattcaaaagagatggaaaatctttatttg |
160 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19827434 |
gcatctaatgtacccagcattcaaaagagatggaaaatctttatttg |
19827388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 189 - 300
Target Start/End: Complemental strand, 19824272 - 19824161
Alignment:
| Q |
189 |
ccttccaggttgggtagtgttcctgcaaaggactgaaaatatctcatcagctaagcaccacttctcagtgtggaacattcgacactccagactctaacaa |
288 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19824272 |
ccttccaggttggatagttttcctgcaaaggactgaaaatatctcatcagctaagcaccacttctcagtgtggaacattcgacactccagactctaacaa |
19824173 |
T |
|
| Q |
289 |
acctctaattat |
300 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19824172 |
acctctaattat |
19824161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 19824449 - 19824301
Alignment:
| Q |
14 |
atatattgcaatctcgtagatcatttcgatctccgctaagctttaaaacaatcaatgatcttaaattcagttgccttatcttgtaaaattt--nnnnnnn |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19824449 |
atatattgcaatctcgtagatcttttcgatctccgccaagctttaaaacaatcaatgatcttaaattcaattgccttatcttgtaaaatttaaaaaaaaa |
19824350 |
T |
|
| Q |
112 |
gaggatctaatgtacccagcattcaaaagagatggaaaatctttatttg |
160 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19824349 |
gagcatctaatgtacccagcattcaaaagagatggaaaatctttatttg |
19824301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 37645577 - 37645454
Alignment:
| Q |
37 |
tttcgatctccgctaagctttaaaacaatcaatgatcttaaattcagttgccttatcttgtaaaatttnnnnnnngaggatctaatgtacccagcattca |
136 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||| || ||||||| ||||||||||||| |
|
|
| T |
37645577 |
tttcgatctccgctaagctttaatcaaatcaatgagcttaaattcagttgccttaccttgtaatttttttaaaaaaagcatctaatatacccagcattca |
37645478 |
T |
|
| Q |
137 |
aaagagatggaaaatctttatttg |
160 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
37645477 |
ggagagatagaaaatctttatttg |
37645454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University