View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5858_low_1 (Length: 803)
Name: NF5858_low_1
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5858_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 32017422 - 32016911
Alignment:
| Q |
1 |
ccaccaaaaaccagaaaaaaggggaggcgcaaacagcagaccagaaagcattaacaggcctcacaaacagcaaagacctcccttcccaggccagatagca |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32017422 |
ccaccaaaaaccagaaaaaaggggaggtgcaaacagcagaccagaaagcataaaaaggcctcacaaacagcaaagacctcccttcccaggccagatagca |
32017323 |
T |
|
| Q |
101 |
gaaaa---------------caacactccccgcannnnnnnaagacagcagcactactacagatagcagaacagccgcataggggaaaacaccaacaaaa |
185 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32017322 |
gaaaaagcccaggcagtaaacaacactccccgcacccccccaagacagcagcactactacagatagcagaacagccgcataggggaaaaaaccaacaaaa |
32017223 |
T |
|
| Q |
186 |
cctgctgtgaaccaacccagagagcacagctcgaaaaacacagaccctccccccttaaatactaccttcttaagcaatcttcaggatcccaattccacta |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32017222 |
cctgctgtgaaccaacccagagagcacagctcgaaaaacacagaccctccccccttaaatactaccttcttaagcaatcttcaggatcccaattccactc |
32017123 |
T |
|
| Q |
286 |
gtaaaataggcaaggcaaaaccttcaatctcatcaacatccatctccaagacaacaccttgatctcttccaccatctcctccacatcttttgaatgattc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32017122 |
gtaaaataggcaaggcaaaaccttcaatctcatcaacatccatctccaagacaacaccttgatctcttccaccatctcctccacatcttttgaatgattc |
32017023 |
T |
|
| Q |
386 |
tcaaatatctttgcatttctagctttccatatcacccaaataattgcgtgccaaactaaccaaaaccctttcagcatctacttacctctcgcttccccac |
485 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32017022 |
tcaaatatctttgcatttctagctttccatatcacccaaataattgcgtgccaaactaaccaaaaccctttccgcatctacttacctctcgcttccccac |
32016923 |
T |
|
| Q |
486 |
tccaacattcaa |
497 |
Q |
| |
|
|||||||||||| |
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|
| T |
32016922 |
tccaacattcaa |
32016911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 526 - 785
Target Start/End: Complemental strand, 32016906 - 32016637
Alignment:
| Q |
526 |
aatccatgatttttctccaaagtcaatcccatgattttcctccaattcttagaaataacactacaatgcaagaaaagatgcgttgaagattctacctaag |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |
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| T |
32016906 |
aatccatgatttttctccaaagtcaatcccatgattttcctccaattcttagaaataacactacaatgcaagaaaatatgtgttgaagattctaccgaag |
32016807 |
T |
|
| Q |
626 |
catcgcaaaaaacacaattggtcgaacttttcgggtccaataaattctgaatggcaagattcctcccgtaggaatccgatcacg----------caagaa |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||| |||||| |
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| T |
32016806 |
catcgcaaaaaacacaattggtcgaacttttcggatccaataaattctgaatggcaagatttctcctgtaggaatccgattacgaagaagtttccaagaa |
32016707 |
T |
|
| Q |
716 |
aaagccacaacttttgacggggccgggcttttccaaaagtaatcaaacaccttttcctccacaggattca |
785 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||||| |
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|
| T |
32016706 |
aaagccacaacttttgacggggctgggcttttccaaaggtaaccaaacacctcttcctccaccggattca |
32016637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 27659339 - 27659295
Alignment:
| Q |
61 |
tcacaaacagcaaagacctcccttcccaggccagatagcagaaaa |
105 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
27659339 |
tcacaaacagcacagacctcccttctcaggccagatagcagaaaa |
27659295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 37604698 - 37604793
Alignment:
| Q |
10 |
accagaaaaaaggggaggcgcaaacagcagaccagaaagcattaacaggcctcacaaacagcaaagacctcccttcccaggccagatagcagaaaa |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
37604698 |
accaaaaaacaggggaggcgcaaacagcagaccagaaatcacaaacaggcctcacaaacagcacagacctcccttcccaagccagatagcagaaaa |
37604793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 919435 - 919392
Alignment:
| Q |
329 |
ctccaagacaacaccttgatctcttccaccatctcctccacatc |
372 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| |||||||| |
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|
| T |
919435 |
ctccaagacaacaccttgatctcctccactatctcttccacatc |
919392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 25542731 - 25542676
Alignment:
| Q |
27 |
gcgcaaacagcagaccagaaagcattaacaggcctcacaaacagcaaagacctccc |
82 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||| |||||| |||| |
|
|
| T |
25542731 |
gcgcaaacagcagaccagaaaacacaaacaggcctcacaaacagaaaagacttccc |
25542676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3595097 - 3595051
Alignment:
| Q |
1 |
ccaccaaaaaccagaaaaaaggggaggcgcaaacagcagaccagaaa |
47 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||| ||||| |
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|
| T |
3595097 |
ccaccaaaaaccagaaaaaatggggggcacaaacagcagacaagaaa |
3595051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 752
Target Start/End: Complemental strand, 7425105 - 7425062
Alignment:
| Q |
709 |
gcaagaaaaagccacaacttttgacggggccgggcttttccaaa |
752 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| ||||||| |
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|
| T |
7425105 |
gcaagaaaaagccacaacttttgaccgagccgggctcttccaaa |
7425062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 26397778 - 26397728
Alignment:
| Q |
319 |
caacatccatctccaagacaacaccttgatctcttccaccatctcctccac |
369 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |
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|
| T |
26397778 |
caacatccatcgccaagacattaccttgatctcttccactatctcatccac |
26397728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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