View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5858_low_11 (Length: 243)

Name: NF5858_low_11
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5858_low_11
NF5858_low_11
[»] chr4 (2 HSPs)
chr4 (1-52)||(18050136-18050187)
chr4 (162-236)||(18050292-18050366)
[»] chr3 (2 HSPs)
chr3 (1-52)||(4395139-4395190)
chr3 (162-236)||(4394960-4395034)
[»] chr2 (1 HSPs)
chr2 (163-211)||(23456563-23456611)


Alignment Details
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 18050136 - 18050187
Alignment:
Q  1 catttggtatatcactttgtaatccattttgatgtaggaggggtttctagag 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18050136 catttggtatatcactttataatccattttgatgtaggaggggtttctagag 18050187  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 18050292 - 18050366
Alignment:
Q  162 tggtggattctagaattttattatcataaatttgtcgcttgcaaacttgtccttttcgcttgctaacctatgctt 236  Q
    ||||||||| |||||||||||||||| || ||||||||||||||| ||||| |||||||||||||| || |||||    
T  18050292 tggtggattttagaattttattatcacaagtttgtcgcttgcaaatttgtcattttcgcttgctaatctctgctt 18050366  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4395190 - 4395139
Alignment:
Q  1 catttggtatatcactttgtaatccattttgatgtaggaggggtttctagag 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4395190 catttggtatatcactttataatccattttgatgtaggaggggtttctagag 4395139  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 4395034 - 4394960
Alignment:
Q  162 tggtggattctagaattttattatcataaatttgtcgcttgcaaacttgtccttttcgcttgctaacctatgctt 236  Q
    ||||||||| |||||||||||||||| || ||||||||||||||| ||||| |||||||||||||| || |||||    
T  4395034 tggtggattttagaattttattatcacaagtttgtcgcttgcaaatttgtcattttcgcttgctaatctctgctt 4394960  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 23456563 - 23456611
Alignment:
Q  163 ggtggattctagaattttattatcataaatttgtcgcttgcaaacttgt 211  Q
    ||||||||| |||| |||||| ||| || ||||||||||||||||||||    
T  23456563 ggtggattccagaactttattttcaaaagtttgtcgcttgcaaacttgt 23456611  T

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