View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5858_low_12 (Length: 235)
Name: NF5858_low_12
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5858_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17993415 - 17993339
Alignment:
| Q |
1 |
atacagaagtagagtcatacctttcataagacagacaatgatccacagtaacatgacacagacaatgggttcacagt |
77 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||||||||| |
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| T |
17993415 |
atacagaaaaagagtcatacctttcataagacagacaatgattcacagtaacacggcgcagacaatgggttcacagt |
17993339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 17993207 - 17993159
Alignment:
| Q |
168 |
atttaagaatcaatgaacatttggttaggtctaacaccacattaattta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17993207 |
atttaagaatcaatgaacatttggttaggtctaacaccacattaattta |
17993159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15119154 - 15119066
Alignment:
| Q |
1 |
atacagaagtagagtcatacctttcataagacagacaatgatccacagtaacatgacacagacaatgggttcacag-tcccacgtgtcc |
88 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||| || |||| || | |||| |||||||||| |||||||||||| |
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| T |
15119154 |
atacagaagcagaaccatacctttcataagacagacaatgatccacaatagcatggcagaaacaacgggttcacagttcccacgtgtcc |
15119066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25631217 - 25631293
Alignment:
| Q |
1 |
atacagaagtagagtcatacctttcataagacagacaatgatccacagtaacatgacacagacaatgggttcacagt |
77 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||| | |||| || |||||| ||||||||||| |
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|
| T |
25631217 |
atacagaagcagaaccatacctttcataagacagacaatgatccacaaaagcatggcagagacaacgggttcacagt |
25631293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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