View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5858_low_4 (Length: 438)

Name: NF5858_low_4
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5858_low_4
NF5858_low_4
[»] chr1 (4 HSPs)
chr1 (5-424)||(5443949-5444383)
chr1 (5-82)||(8757286-8757363)
chr1 (39-75)||(13350808-13350844)
chr1 (50-82)||(35997042-35997074)
[»] chr8 (2 HSPs)
chr8 (32-93)||(42445800-42445859)
chr8 (17-76)||(20523858-20523917)
[»] chr7 (3 HSPs)
chr7 (5-93)||(23982034-23982120)
chr7 (39-82)||(24250158-24250201)
chr7 (33-93)||(32958536-32958594)
[»] chr3 (4 HSPs)
chr3 (5-81)||(21177048-21177123)
chr3 (39-82)||(35381829-35381872)
chr3 (50-82)||(41259965-41259997)
chr3 (38-82)||(52910400-52910444)
[»] chr4 (2 HSPs)
chr4 (39-82)||(28091341-28091384)
chr4 (37-79)||(49582574-49582616)
[»] chr6 (3 HSPs)
chr6 (32-82)||(2556252-2556302)
chr6 (52-82)||(21023698-21023728)
chr6 (50-79)||(8176975-8177004)
[»] chr5 (2 HSPs)
chr5 (52-82)||(43406016-43406046)
chr5 (37-82)||(31478700-31478745)
[»] chr2 (2 HSPs)
chr2 (48-82)||(9294134-9294168)
chr2 (40-93)||(44287845-44287896)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 5 - 424
Target Start/End: Complemental strand, 5444383 - 5443949
Alignment:
Q  5 gtagctaccagggacattatgtaccgaggtcagagttcgaactctgaattctccacttctccacacataatgtgtgtgtgaatctagcctagggtcacta 104  Q
    |||||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| | |||||    
T  5444383 gtagctaccagggacattatgtaccgggatcagagttcgaactccgaattcttcacttctccacacataatgtgtgtgtgaatctagcatagtgccacta 5444284  T
Q  105 ggctaattgaagaagnnnnnnnntagcttaattatttttgtccnnnnnnntaatatttcttatatgatctataagtctactt------------------ 186  Q
    ||||||||||||||         ||||||||||||||||||||       ||||||||||||||||||||||||||||||||                      
T  5444283 ggctaattgaagaa---aaaaaatagcttaattatttttgtccaaaaaaataatatttcttatatgatctataagtctacttaaatgtctaaatgttttt 5444187  T
Q  187 tcaagtagtcaatagactagaattccaccatttttgtaataaaagtccatgaactgaaattttgagggatatttaactgataattaattgtatgatattt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5444186 tcaagtagtcaatagactagaattccaccatttttgtaataaaagtccatgaactgaaattttgagggatatttaactgataattaattgtatgatattt 5444087  T
Q  287 gctttttcttgacataaaaaggtcatgcataaccgttagtatcaattcataagctttttgttgtataacaacatgaaaatgaaatttcaaatggaaatgg 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  5444086 gctttttcttgacataaaaaggtcatgcataaccgttagtatcaattcataaacttcttgttgtataacaacatgaaaatgaaatttcaaatggaaatgg 5443987  T
Q  387 caaatccatgtcgagcataaatagtgtgcaaagtatat 424  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5443986 caaatccatgtcgagcataaatagtgtgcaaagtatat 5443949  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 8757363 - 8757286
Alignment:
Q  5 gtagctaccagggacattatgtaccgaggtcagagttcgaactctgaattctccacttctccacacataatgtgtgtg 82  Q
    ||||||||||| |||||||||| | | || | | |||||||| ||| |||| |||| |||||||||||||||||||||    
T  8757363 gtagctaccagagacattatgtgcaggggccggggttcgaaccctggattccccacgtctccacacataatgtgtgtg 8757286  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 13350808 - 13350844
Alignment:
Q  39 gttcgaactctgaattctccacttctccacacataat 75  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  13350808 gttcgaactccgaattttccacttctccacacataat 13350844  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 35997042 - 35997074
Alignment:
Q  50 gaattctccacttctccacacataatgtgtgtg 82  Q
    ||||||||||||||| |||||||||||||||||    
T  35997042 gaattctccacttcttcacacataatgtgtgtg 35997074  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 42445800 - 42445859
Alignment:
Q  32 ggtcagagttcgaactctgaattctccacttctccacacataatgtgtgtgtgaatctagcc 93  Q
    |||||| |||||||||||||||| ||||||| || ||||||||||||  |||||||||||||    
T  42445800 ggtcagggttcgaactctgaattatccacttttctacacataatgtg--tgtgaatctagcc 42445859  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 20523917 - 20523858
Alignment:
Q  17 gacattatgtaccgaggtcagagttcgaactctgaattctccacttctccacacataatg 76  Q
    ||||||||||||  ||||||||||||||||||   ||||| |||||||||||||| ||||    
T  20523917 gacattatgtacaaaggtcagagttcgaactccagattcttcacttctccacacacaatg 20523858  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 23982034 - 23982120
Alignment:
Q  5 gtagctaccagggacattatgtaccgaggtcagagttcgaactctgaattctccacttctccacacataatgtgtgtgtgaatctagcc 93  Q
    |||||||||||||| | | ||| | ||||| ||||||||||||| | |||||||| |||||  |||||||||||  |||||||||||||    
T  23982034 gtagctaccagggataatttgtgcagaggttagagttcgaactccggattctccatttctctgcacataatgtg--tgtgaatctagcc 23982120  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 24250201 - 24250158
Alignment:
Q  39 gttcgaactctgaattctccacttctccacacataatgtgtgtg 82  Q
    |||||||| ||| ||||||||||| |||||||||||||||||||    
T  24250201 gttcgaaccctggattctccacttttccacacataatgtgtgtg 24250158  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 32958536 - 32958594
Alignment:
Q  33 gtcagagttcgaactctgaattctccacttctccacacataatgtgtgtgtgaatctagcc 93  Q
    |||||||||||||| | | ||||||||||| ||||||| |||||||  |||||||||||||    
T  32958536 gtcagagttcgaaccccggattctccacttatccacacttaatgtg--tgtgaatctagcc 32958594  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 21177123 - 21177048
Alignment:
Q  5 gtagctaccagggacattatgtaccgaggtcagagttcgaactctgaattctccacttctccacacataatgtgtgt 81  Q
    ||||||||||| |||| | ||||| | ||||| |||||||||   |||||| |||||||||||||||||||||||||    
T  21177123 gtagctaccagagacaatttgtacag-ggtcaaagttcgaacctcgaattccccacttctccacacataatgtgtgt 21177048  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 35381872 - 35381829
Alignment:
Q  39 gttcgaactctgaattctccacttctccacacataatgtgtgtg 82  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||    
T  35381872 gttcgaactctgaattccccacttcttcacacataatgcgtgtg 35381829  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 41259997 - 41259965
Alignment:
Q  50 gaattctccacttctccacacataatgtgtgtg 82  Q
    |||||| ||||||||||||||||||||||||||    
T  41259997 gaattccccacttctccacacataatgtgtgtg 41259965  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 52910444 - 52910400
Alignment:
Q  38 agttcgaactctgaattctccacttctccacacataatgtgtgtg 82  Q
    ||||| ||| || ||||| ||||||||||||||||||||||||||    
T  52910444 agttcaaaccctaaattccccacttctccacacataatgtgtgtg 52910400  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 28091384 - 28091341
Alignment:
Q  39 gttcgaactctgaattctccacttctccacacataatgtgtgtg 82  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||    
T  28091384 gttcgaactccaaattccccacttctccacacataatgtgtgtg 28091341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 49582616 - 49582574
Alignment:
Q  37 gagttcgaactctgaattctccacttctccacacataatgtgt 79  Q
    |||||||||| | ||||||||||||||| ||||||||||||||    
T  49582616 gagttcgaaccccgaattctccacttcttcacacataatgtgt 49582574  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 2556302 - 2556252
Alignment:
Q  32 ggtcagagttcgaactctgaattctccacttctccacacataatgtgtgtg 82  Q
    |||||||||||||| |  ||||||||||||||| |||| ||||||||||||    
T  2556302 ggtcagagttcgaatttcgaattctccacttcttcacatataatgtgtgtg 2556252  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 82
Target Start/End: Complemental strand, 21023728 - 21023698
Alignment:
Q  52 attctccacttctccacacataatgtgtgtg 82  Q
    |||||||||||||||||||||||||||||||    
T  21023728 attctccacttctccacacataatgtgtgtg 21023698  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 8176975 - 8177004
Alignment:
Q  50 gaattctccacttctccacacataatgtgt 79  Q
    ||||||||||||||||||||||||||||||    
T  8176975 gaattctccacttctccacacataatgtgt 8177004  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 82
Target Start/End: Complemental strand, 43406046 - 43406016
Alignment:
Q  52 attctccacttctccacacataatgtgtgtg 82  Q
    |||||||||||||||||||||||||||||||    
T  43406046 attctccacttctccacacataatgtgtgtg 43406016  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 31478745 - 31478700
Alignment:
Q  37 gagttcgaactctgaattctccacttctccacacataatgtgtgtg 82  Q
    |||||||||||  | |||||||||||||| ||||||||||||||||    
T  31478745 gagttcgaacttcggattctccacttctctacacataatgtgtgtg 31478700  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 9294168 - 9294134
Alignment:
Q  48 ctgaattctccacttctccacacataatgtgtgtg 82  Q
    |||||||| ||||||||||||||||||||||||||    
T  9294168 ctgaattcaccacttctccacacataatgtgtgtg 9294134  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 44287845 - 44287896
Alignment:
Q  40 ttcgaactctgaattctccacttctccacacataatgtgtgtgtgaatctagcc 93  Q
    ||||||||| | |||| ||||||||||||||||||||||  |||||||||||||    
T  44287845 ttcgaactccggattccccacttctccacacataatgtg--tgtgaatctagcc 44287896  T

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