View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5858_low_5 (Length: 387)

Name: NF5858_low_5
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5858_low_5
NF5858_low_5
[»] chr4 (7 HSPs)
chr4 (8-369)||(10986618-10986960)
chr4 (8-349)||(11095629-11095975)
chr4 (8-369)||(11106303-11106670)
chr4 (118-224)||(11099889-11099998)
chr4 (32-193)||(11248235-11248396)
chr4 (8-156)||(9895150-9895298)
chr4 (270-355)||(11099765-11099850)
[»] chr8 (1 HSPs)
chr8 (33-225)||(13308146-13308338)
[»] chr7 (5 HSPs)
chr7 (29-225)||(18949680-18949877)
chr7 (29-225)||(19004004-19004201)
chr7 (90-229)||(19004697-19004836)
chr7 (90-229)||(18950373-18950512)
chr7 (33-193)||(15867962-15868122)
[»] chr2 (1 HSPs)
chr2 (32-186)||(15072890-15073044)
[»] chr3 (3 HSPs)
chr3 (33-214)||(29358200-29358381)
chr3 (129-193)||(27530690-27530754)
chr3 (129-193)||(27548346-27548410)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 10986960 - 10986618
Alignment:
Q  8 gagcacagattggaccccttctggtgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgcta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10986960 gagcacagattggaccccttctggtgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacaaagggtgcta 10986861  T
Q  108 agttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtttaacttttcttctag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10986860 agttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattcacaatgaaggcaagtttaacttttcttctag 10986761  T
Q  208 tcatggttgtgacaagaacaaaagacaatgaaacttgagnnnnnnnntgattgtggtattttttgttgtgaataatgtctcagtactttttgtttatata 307  Q
    ||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10986760 tcatggttgtgacaagaacaaaagacaa-------------------tgattgtggtattttttgttgtgaataatgtctcaatactttttgtttatata 10986680  T
Q  308 gacatatttgatatagatggtttcatttcaaaatgatatttggtgtatctgtgacaaatttc 369  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10986679 gacaaatttgatatagatggtttcatttcaaaatgatatttggtgtatctgtgacaaatttc 10986618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 11095975 - 11095629
Alignment:
Q  8 gagcacagattggaccccttctggtgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgcta 107  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||| || || || ||||| |||||||||    
T  11095975 gagcacagattggacaccttctggtgatggccaaatctcaggatgaggctcataagggccatacactatggcacaagcctcaataccacagagggtgcta 11095876  T
Q  108 agttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtttaacttttcttctag 207  Q
    |||||| |||||||||| || |||| |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||  |||||     
T  11095875 agttcaacaacctttttgaacagactcttcttccttttcttgtatgctgctttccttgcagcatcgttgacaatgaaggcaagtttaaccttagttctaa 11095776  T
Q  208 tcatggttgtgacaagaacaaaagacaatgaaacttg--agnnnnnnnntga---ttgtggtattttttgttgtgaataatgtctcagtactttttgttt 302  Q
     ||||||||||||||||||||||||||||||||||||  ||        |||   ||||||||||| |||||||||||||||||||| ||||||||| ||    
T  11095775 ccatggttgtgacaagaacaaaagacaatgaaacttgaaagaaaaaagttgattgttgtggtatttcttgttgtgaataatgtctcattactttttggtt 11095676  T
Q  303 atatagacatatttgatatagatggtttcatttcaaaatgatatttg 349  Q
    ||||||||  |||||||||  ||||||| |||||   ||||||||||    
T  11095675 atatagaccaatttgatatgcatggtttgatttccggatgatatttg 11095629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 11106670 - 11106303
Alignment:
Q  8 gagcacagattggaccccttctggtgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgcta 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| || || || ||||| |||||||||    
T  11106670 gagcacagattggaccccttctggtgatggccaaatctcaggatgaggctcataagggccatacaatatggcacaagcctcaataccacagagggtgcta 11106571  T
Q  108 agttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtttaacttttcttctag 207  Q
    |||||| |||||||||| ||||||| |||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| || | ||||     
T  11106570 agttcaacaacctttttgaatagactcttcttccttttcttatatgctgctttcctagcagcatcattgacaatgaaggcaagtttaaccttacctctaa 11106471  T
Q  208 tcatggttgtgacaagaacaaaagac-aatgaaacttg--agnnnnnnnntga---ttgtggtattttttgttgtgaataatgtctcagtactttttgtt 301  Q
     |||||||||||||||| |||| ||| ||  ||| |||  ||        |||   ||||||||||| |||||||||||||||||||  |||||||| ||    
T  11106470 ccatggttgtgacaagagcaaaggacaaaaaaaaattgaaagaaaaaagttgattgttgtggtatttcttgttgtgaataatgtctcgttactttttatt 11106371  T
Q  302 tatatagacatatttgatatagatggtttcatttcaaaatgatatttggtgtatctgtgacaaatttc 369  Q
    |||||||||  |||||||||  || |||  ||||  | ||||| |||||||||| |||||| ||||||    
T  11106370 tatatagaccaatttgatatgcattgttgtatttttagatgatttttggtgtatgtgtgactaatttc 11106303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 11099998 - 11099889
Alignment:
Q  118 cctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtttaactt---ttcttctagtcatggt 214  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |   ||||||||  ||||||    
T  11099998 cctttttgaatagactcttcttccttttcttgtatgttgctttcctagcagcatcattgacaatgaaggcaagtttaaccttacttcttctacccatggt 11099899  T
Q  215 tgtgacaaga 224  Q
    ||||||||||    
T  11099898 tgtgacaaga 11099889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 11248235 - 11248396
Alignment:
Q  32 tgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgctaagttcagcaacctttttcaataga 131  Q
    ||||||||| |||| ||||||| |||| || || ||||| || ||||||||||| || | |||||| || ||||| ||||||  |||||| |||| ||||    
T  11248235 tgatggccatatcttaggttgaggctcgtatggtccatagactatggcacatgcttcaactccacacagagtgcttagttcataaaccttcttcagtaga 11248334  T
Q  132 cccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagttt 193  Q
    ||| ||   || || ||||||||||||||||| |  ||||||||||||||||| ||||||||    
T  11248335 cccctccacctattattgtatgttgctttcctagatgcatcattgacaatgaaagcaagttt 11248396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 9895150 - 9895298
Alignment:
Q  8 gagcacagattggaccccttctggtgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgcta 107  Q
    |||||| | |||||| || | |||||||||||| ||||  |||||| ||||||| || ||||| || |||||||| || || | ||||||||| |||||     
T  9895150 gagcactgtttggactccctgtggtgatggccagatcttcggttgaggctcatatggtccatagacaatggcacaagcttcaactccacatagagtgctt 9895249  T
Q  108 agttcagcaacctttttcaatagacccttctttcttttcttgtatgttg 156  Q
    ||||||  |||||| || |||| ||||||||  ||||| ||||||||||    
T  9895250 agttcataaaccttcttgaataaacccttctgccttttattgtatgttg 9895298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 11099850 - 11099765
Alignment:
Q  270 ttgttgtgaataatgtctcagtactttttgtttatatagacatatttgatatagatggtttcatttcaaaatgatatttggtgtat 355  Q
    |||||||||||||||||||  || |||||||||||||||||  | |||||||  ||||||  ||||| | ||||||||||||||||    
T  11099850 ttgttgtgaataatgtctcgttaatttttgtttatatagaccaaattgatatgcatggttcaatttctagatgatatttggtgtat 11099765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 225
Target Start/End: Complemental strand, 13308338 - 13308146
Alignment:
Q  33 gatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgctaagttcagcaacctttttcaatagac 132  Q
    ||||||||||||||||||||  | |||||||| || ||||| || ||||| || || |||||||| || ||||| |||||  ||| ||| ||||||| ||    
T  13308338 gatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttcttcaataaac 13308239  T
Q  133 ccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtttaacttttcttctagtcatggttgtgacaagaa 225  Q
    ||||| | ||||||||||||||| |||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||    
T  13308238 ccttcatccttttcttgtatgttacttttcttgcagcgtcattgacaatgaaggcaagtttcacctttcttctagtcatggttgcgactagaa 13308146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 18949877 - 18949680
Alignment:
Q  29 tggtgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgctaagttcagcaaccttt-ttcaa 127  Q
    ||||||||||||||||||| ||||  | |||||||||||||| |  || ||||| || || |||||||| |||||||| |||||| ||| |||| |||||    
T  18949877 tggtgatggccaaatctcaagttgtggttcataagggccatacattatagcacaagcttcaattccacaaagggtgcttagttcatcaaactttattcaa 18949778  T
Q  128 tagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtttaacttttcttctagtcatggttgtgacaagaa 225  Q
    || || |||||| ||||| ||||||||||||||  |   ||||||||| ||| |  ||| |||||| || ||| ||||||||||| ||||||| ||||    
T  18949777 taaactcttcttcctttttttgtatgttgcttttatactagcatcatttacattagaggaaagtttcaccttttttctagtcatgattgtgactagaa 18949680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 19004201 - 19004004
Alignment:
Q  29 tggtgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgctaagttcagcaaccttt-ttcaa 127  Q
    ||||||||||||||||||| ||||  | |||||||||||||| |  || ||||| || || |||||||| |||||||| |||||| ||| |||| |||||    
T  19004201 tggtgatggccaaatctcaagttgtggttcataagggccatacattatagcacaagcttcaattccacaaagggtgcttagttcatcaaactttattcaa 19004102  T
Q  128 tagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtttaacttttcttctagtcatggttgtgacaagaa 225  Q
    || || |||||| ||||| ||||||||||||||  |   ||||||||| ||| |  ||| |||||| || ||| ||||||||||| ||||||| ||||    
T  19004101 taaactcttcttcctttttttgtatgttgcttttatactagcatcatttacattagaggaaagtttcaccttttttctagtcatgattgtgactagaa 19004004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 19004697 - 19004836
Alignment:
Q  90 attccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaa 189  Q
    |||| ||| ||| |||| |||||  ||||||| ||||  |||||||||||  |||||||||||||| |||| |||||||||||||| ||| | ||  |||    
T  19004697 attctacaaaggatgcttagttcttcaaccttattcagcagacccttcttcgttttcttgtatgtttcttttcttgcagcatcatttacattaaattcaa 19004796  T
Q  190 gtttaacttttcttctagtcatggttgtgacaagaacaaa 229  Q
    |||| || ||| ||||||| |||||| |||||||||||||    
T  19004797 gttttaccttttttctagttatggttttgacaagaacaaa 19004836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 18950373 - 18950512
Alignment:
Q  90 attccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaa 189  Q
    |||| ||| ||| |||| |||||  ||||||| ||||| | |||||||||  |||||||||||||| |||| |||||||||||||| ||| | ||  |||    
T  18950373 attctacaaaggatgcttagttcttcaaccttattcaacatacccttcttcgttttcttgtatgtttcttttcttgcagcatcatttacattaaattcaa 18950472  T
Q  190 gtttaacttttcttctagtcatggttgtgacaagaacaaa 229  Q
    |||| || ||| ||||| | |||||| |||||||||||||    
T  18950473 gttttaccttttttctaattatggttttgacaagaacaaa 18950512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 15867962 - 15868122
Alignment:
Q  33 gatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgctaagttcagcaacctttttcaatagac 132  Q
    |||||| ||||||||||||  || |||||||  |||||| | || | |||  |||| |||||||| ||| | || | ||||  |||| | ||||||||||    
T  15867962 gatggctaaatctcaggttatagttcataagttccataacctatagtacaaacatcaattccacaaaggtttcttatttcattaaccctcttcaatagac 15868061  T
Q  133 ccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagttt 193  Q
    |||| || |||||||| ||||||||||||||| || ||| ||| ||| |||| | ||||||    
T  15868062 ccttattccttttcttttatgttgctttccttacaacattattcacattgaatgaaagttt 15868122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 15073044 - 15072890
Alignment:
Q  32 tgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgctaagttcagcaacctttttcaataga 131  Q
    |||||||||||| | ||||||| | |||| ||| || | ||| || |||||||| || || ||||| || ||||| |||||| | ||||| ||||||| |    
T  15073044 tgatggccaaatatgaggttgaggttcatgaggaccttgaactatagcacatgcttcaataccacaaagcgtgcttagttcatcgaccttcttcaataaa 15072945  T
Q  132 cccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaagg 186  Q
       ||||||||||| || || |||||||||   ||||| ||||||||||||||||    
T  15072944 ttattctttctttttttataggttgctttctgagcagcgtcattgacaatgaagg 15072890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 214
Target Start/End: Original strand, 29358200 - 29358381
Alignment:
Q  33 gatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacatagggtgctaagttcagcaacctttttcaatagac 132  Q
    |||||||||| |||||||||| | || || || | ||| |  || ||||| ||||| || ||||| |||||||| ||||||  ||||||||||| |||||    
T  29358200 gatggccaaacctcaggttgaggatcgtatggactatagattatagcacaagcatcaataccacagagggtgctgagttcactaacctttttcattagac 29358299  T
Q  133 ccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtttaacttttcttctagtcatggt 214  Q
    | ||||| ||||||||| | || || ||||| || |  || ||||  ||||| || ||||| || ||| |||||||||||||    
T  29358300 ctttcttccttttcttgaacgtcgccttcctcgcggagtcgttgattatgaatgcgagtttcaccttttttctagtcatggt 29358381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 27530690 - 27530754
Alignment:
Q  129 agacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagttt 193  Q
    |||| ||| |||||||| ||||| |||  ||||||||||| ||||||||| ||||| ||||||||    
T  27530690 agactcttttttcttttgttgtaagttattttccttgcagaatcattgaccatgaaagcaagttt 27530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 27548346 - 27548410
Alignment:
Q  129 agacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagttt 193  Q
    |||| ||| |||||||| ||||| |||  ||||||||||| ||||||||| ||||| ||||||||    
T  27548346 agactcttttttcttttgttgtaagttattttccttgcagaatcattgaccatgaatgcaagttt 27548410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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