View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5858_low_8 (Length: 329)
Name: NF5858_low_8
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5858_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 27158806 - 27159096
Alignment:
| Q |
14 |
aaatgtataaggtatatctctagcttggagaatttagacgtctcatatttgagccataattaattccttcattaaccgttatggatgagtccatgtccat |
113 |
Q |
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| T |
27158806 |
aaatgtataaggtatatctctagcttggagaatttagacgtctcacatctgagccataattaattcctttattaaccgttatggatgagtccatgtccat |
27158905 |
T |
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| Q |
114 |
gtatttgatacaaagaatttgattctaaatttcaaagtaggtccatgcaatatatggttcaaaaacgatcatattctggcccgcaaaaatctatgtatgc |
213 |
Q |
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| T |
27158906 |
gtatttgatacaaagaatttgattctaaatttcaaagtaggtccatgcaatatatggttcaaaaacgatcatattctggcccgcaaaaatctatgtatgc |
27159005 |
T |
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| Q |
214 |
atgacttcatattgacgaaacaagaaattactaccttctaaaacatacacctagtatatgttgtgtatataaatatattttgaatagattatc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27159006 |
atgacttcatattgacgaaacaagaaattactaccttctaaaacatacacctag--tatgttgtgtatataaatatattttgaatagattatc |
27159096 |
T |
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