View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5858_low_9 (Length: 309)

Name: NF5858_low_9
Description: NF5858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5858_low_9
NF5858_low_9
[»] chr4 (1 HSPs)
chr4 (156-309)||(9047619-9047771)
[»] chr6 (7 HSPs)
chr6 (3-151)||(17999327-17999476)
chr6 (30-144)||(17994992-17995106)
chr6 (44-151)||(17994925-17995032)
chr6 (33-127)||(17999439-17999533)
chr6 (1-45)||(17994004-17994049)
chr6 (67-98)||(17999293-17999324)
chr6 (214-287)||(21258127-21258200)
[»] chr2 (2 HSPs)
chr2 (212-308)||(22564540-22564635)
chr2 (183-248)||(24185763-24185828)
[»] scaffold0126 (2 HSPs)
scaffold0126 (183-290)||(38762-38869)
scaffold0126 (183-248)||(43737-43802)
[»] chr3 (1 HSPs)
chr3 (183-290)||(14960141-14960248)
[»] chr1 (1 HSPs)
chr1 (183-290)||(19280807-19280914)
[»] scaffold0490 (1 HSPs)
scaffold0490 (202-287)||(9978-10063)
[»] chr7 (2 HSPs)
chr7 (183-248)||(10012623-10012688)
chr7 (208-287)||(13043062-13043141)
[»] chr5 (1 HSPs)
chr5 (211-287)||(38622710-38622786)
[»] scaffold0664 (1 HSPs)
scaffold0664 (210-290)||(1950-2030)
[»] chr8 (1 HSPs)
chr8 (157-245)||(19196204-19196292)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 156 - 309
Target Start/End: Complemental strand, 9047771 - 9047619
Alignment:
Q  156 tatgattgcaattgagattgcatacaacaaaggttttcggaatctctggcttgaatcagactcccaactggttattctggctttcaaatcaaacattgtg 255  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  9047771 tatgattacaattgagattgcatacaacaaaggttttctgaatctctggcttgaatcaaactcccaactggttattctggctttcaaatcaaacactgtg 9047672  T
Q  256 gttccttggggattaagaaatagatggcaaaactggcatggctagattgagaaa 309  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  9047671 gttccttggggattaagaaatagatggcaaaa-ttgcatggctagattgagaaa 9047619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 17999327 - 17999476
Alignment:
Q  3 ttgtaggtaatgtgt-acagtcagcattttggtttgcaaacttatttgttgtattatccaacatgatgtgtaaaatgttaaatatttgaatatatttcca 101  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17999327 ttgtaggtaacgtgttatagtcagcattttggtttgcaaacttatttgttgtattatccaacatgatgtgtaaaatgttaaatatttgaatatatttcca 17999426  T
Q  102 tatacatgcttggtttgcaaacttatttgtagtattatccaacatgatgt 151  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  17999427 tatacatgcttcgtttgcaaacttatttggtgtattatccaacatgatgt 17999476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 17994992 - 17995106
Alignment:
Q  30 ttggtttgcaaacttatttgttgtattatccaacatgatgtgtaaaatgttaaatatttgaatatatttccatatacatgcttggtttgcaaacttattt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17994992 ttggtttgcaaacttatttgttgtattatccaacatgatgtgtaaaatgttaaatattttaatatatttccatatacatgcttggtttgcaaacttattt 17995091  T
Q  130 gtagtattatccaac 144  Q
    || ||||||||||||    
T  17995092 gttgtattatccaac 17995106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 17994925 - 17995032
Alignment:
Q  44 tatttgttgtattatccaacatgatgtgtaaaatgttaaatatttgaatatatttccatatacatgcttggtttgcaaacttatttgtagtattatccaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17994925 tatttgttgtattatccaacatgatgtgtaaaatgttaaatattttaatatatttccatatacatgcttggtttgcaaacttatttgttgtattatccaa 17995024  T
Q  144 catgatgt 151  Q
    ||||||||    
T  17995025 catgatgt 17995032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 17999439 - 17999533
Alignment:
Q  33 gtttgcaaacttatttgttgtattatccaacatgatgtgtaaaatgttaaatatttgaatatatttccatatacatgcttggtttgcaaacttat 127  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17999439 gtttgcaaacttatttggtgtattatccaacatgatgtgtaaaatgttaaatatttgaatatgtttccatatacatgcttggtttgcaaacttat 17999533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17994004 - 17994049
Alignment:
Q  1 tcttgtaggtaatgtgt-acagtcagcattttggtttgcaaactta 45  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  17994004 tcttgtaggtaatgtgttaccgtcagcattttggtttgcaaactta 17994049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 98
Target Start/End: Original strand, 17999293 - 17999324
Alignment:
Q  67 atgtgtaaaatgttaaatatttgaatatattt 98  Q
    ||||||||||||||||||||||||||||||||    
T  17999293 atgtgtaaaatgttaaatatttgaatatattt 17999324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 21258200 - 21258127
Alignment:
Q  214 gactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatggcaaaa 287  Q
    ||||| ||| |||| ||||| ||||||||||| |||| ||| ||||| |||||| |||||||||| ||| ||||    
T  21258200 gactcgcaattggtgattcttgctttcaaatccaacactgtcgttccctggggactaagaaataggtgggaaaa 21258127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 22564540 - 22564635
Alignment:
Q  212 cagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatggcaaaactggcatggctagattgagaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22564540 cagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatggcaaaact-gcatggctagattgagaa 22564635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 24185828 - 24185763
Alignment:
Q  183 caaaggttttcggaatctctggcttgaatcagactcccaactggttattctggctttcaaatcaaa 248  Q
    |||||||||||  ||| | ||||||||||||||||||||| | |||||| |||||||||| |||||    
T  24185828 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaa 24185763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 38762 - 38869
Alignment:
Q  183 caaaggttttcggaatctctggcttgaatcagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatgg 282  Q
    |||||||||||  ||| | ||||||||||||||||||||| | |||||| |||||||||| |||||    |||||||||||| |  | ||||| ||||||    
T  38762 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttggtgcctcagaaacagatgg 38861  T
Q  283 caaaactg 290  Q
    ||||||||    
T  38862 caaaactg 38869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 43737 - 43802
Alignment:
Q  183 caaaggttttcggaatctctggcttgaatcagactcccaactggttattctggctttcaaatcaaa 248  Q
    |||||||||||  ||| | ||||||||||||||||||||| | |||||| |||||||||| |||||    
T  43737 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaa 43802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 14960141 - 14960248
Alignment:
Q  183 caaaggttttcggaatctctggcttgaatcagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatgg 282  Q
    |||||||||||  ||| | ||||||||||||||||||||| | |||||| |||||||||| |||||    |||||||||||| |  | ||||| ||||||    
T  14960141 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttggtgcctcagaaacagatgg 14960240  T
Q  283 caaaactg 290  Q
    ||||||||    
T  14960241 caaaactg 14960248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 19280914 - 19280807
Alignment:
Q  183 caaaggttttcggaatctctggcttgaatcagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatgg 282  Q
    |||||||||||  ||| | ||||||||||||||||||||| | |||| | |||||||||| |||||    |||||||||||| |  | ||||| ||||||    
T  19280914 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttaatttggctttcaagtcaaattcagtggttccttggtgtctcagaaacagatgg 19280815  T
Q  283 caaaactg 290  Q
    ||||||||    
T  19280814 caaaactg 19280807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 9978 - 10063
Alignment:
Q  202 tggcttgaatcagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatggcaaaa 287  Q
    ||||| ||||| || || ||| |||| ||||| ||||||||||| |||| ||| |||||||||||| |||||||||| ||| ||||    
T  9978 tggctggaatcggattcgcaattggtaattcttgctttcaaatccaacagtgtcgttccttggggactaagaaataggtgggaaaa 10063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 10012623 - 10012688
Alignment:
Q  183 caaaggttttcggaatctctggcttgaatcagactcccaactggttattctggctttcaaatcaaa 248  Q
    |||||||||||  ||| | ||||||||||||||||||||| | |||||| |||||||||| |||||    
T  10012623 caaaggttttcaaaatgtatggcttgaatcagactcccaattagttattttggctttcaagtcaaa 10012688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 13043062 - 13043141
Alignment:
Q  208 gaatcagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatggcaaaa 287  Q
    ||||||||||| |||||||| ||| |||||||||| || |    ||||||||||||||| ||||||||||| ||| ||||    
T  13043062 gaatcagactctcaactggtgattatggctttcaattcgatttctgtggttccttggggtttaagaaataggtgggaaaa 13043141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 38622710 - 38622786
Alignment:
Q  211 tcagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatggcaaaa 287  Q
    ||||| || |||||||| ||| |||||||||| ||||    ||||||||||||||||||||||||||| ||| ||||    
T  38622710 tcagattctcaactggtgattatggctttcaattcaatttctgtggttccttggggattaagaaataggtgggaaaa 38622786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 1950 - 2030
Alignment:
Q  210 atcagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatggcaaaactg 290  Q
    ||||||||||||| | |||||| |||||||||| |||||    |||||||||||| |  | ||||| ||||||||||||||    
T  1950 atcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttggtgcctcagaaacagatggcaaaactg 2030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 19196292 - 19196204
Alignment:
Q  157 atgattgcaattgagattgcatacaacaaaggttttcggaatctctggcttgaatcagactcccaactggttattctggctttcaaatc 245  Q
    |||| |||||||||||||||||||||||| |||| |   ||||| ||||| ||| | || || |||||||||||  |||| ||||||||    
T  19196292 atgactgcaattgagattgcatacaacaatggttatactaatctttggctggaaactgattcacaactggttatcttggcattcaaatc 19196204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University