View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5859-Insertion-11 (Length: 166)
Name: NF5859-Insertion-11
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5859-Insertion-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 5e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 5e-67
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 8522223 - 8522386
Alignment:
| Q |
9 |
aaaatcaaactagcaagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgac |
108 |
Q |
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| T |
8522223 |
aaaatcaaactagcaagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaacaaaactacgac |
8522322 |
T |
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| Q |
109 |
atttgcacca------tctaattctgattcgtgattgaactatggttcctcgtcattcttgtcc |
166 |
Q |
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| T |
8522323 |
atttgcaccatctgattctgattctgattcgtgattgaactttggttcctcgtcattcttgtcc |
8522386 |
T |
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Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 42122646 - 42122739
Alignment:
| Q |
49 |
aacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattcgtgattgaac |
142 |
Q |
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| T |
42122646 |
aacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgcaccatctgattctgattcatggttgaac |
42122739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 42116886 - 42116966
Alignment:
| Q |
52 |
agaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattc |
132 |
Q |
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| T |
42116886 |
agaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattctgattc |
42116966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 42128044 - 42128134
Alignment:
| Q |
52 |
agaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattcgtgattgaac |
142 |
Q |
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| T |
42128044 |
agaaagtaaaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattctgattcatggttgaac |
42128134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 41572910 - 41572860
Alignment:
| Q |
76 |
aagagaaaataattacaacaataaaactacgacatttgcaccatctaattc |
126 |
Q |
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| T |
41572910 |
aagagaaaataatcagaacaataaaactatcacatctgcaccatctaattc |
41572860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 34241466 - 34241407
Alignment:
| Q |
67 |
aacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattc |
126 |
Q |
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| T |
34241466 |
aacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatctgattc |
34241407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 11117289 - 11117396
Alignment:
| Q |
36 |
tcaagcttgttttaa-cagaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattcgt |
134 |
Q |
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| T |
11117289 |
tcaagcttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattctgattcat |
11117388 |
T |
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| Q |
135 |
gattgaac |
142 |
Q |
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| T |
11117389 |
gtttgaac |
11117396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 25523943 - 25523884
Alignment:
| Q |
72 |
acaaaagagaaaataattacaacaataaaactacgacatttgcaccatctaattctgattc |
132 |
Q |
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| T |
25523943 |
acaaaagagaaaataactaaaacaat-aaactatgacatttgcatcatctgattctgattc |
25523884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 32682557 - 32682495
Alignment:
| Q |
49 |
aacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaataaaactacgacattt |
112 |
Q |
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| T |
32682557 |
aacagaaagtaaaaact-aacacacaatagagaaaataagcacaacaataagactatgacattt |
32682495 |
T |
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