View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5859-Insertion-3 (Length: 740)
Name: NF5859-Insertion-3
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5859-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 328 - 669
Target Start/End: Original strand, 33655067 - 33655408
Alignment:
| Q |
328 |
atgagaatccatttcttggtcatgaacgatgtgagagcgatccccgtttggaggccattgcatattcccaggataatacggagacggaacctgcatacca |
427 |
Q |
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| T |
33655067 |
atgagaatccatttcttggtcatgaacaatgtgagagcgatccccgtttggaggccattgcatattcccaggataatacggagacggaacctgcatacca |
33655166 |
T |
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| Q |
428 |
ggatacatgtatccttggtatggaggtgtttgttgaaatccatgaccctgaaaattgtgaatgtagtgtggatgatggttcggccatgacctcggcattt |
527 |
Q |
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| T |
33655167 |
ggatacatgtatccttggtatggaggcgtttgttgaaatgcatgaccctgaaaattgtgaatgtactgtggatgatggttcggccatgacctcagcattt |
33655266 |
T |
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| Q |
528 |
gagcccttccatcggatgatggtgtttgaactgatgctggcaagctataatctgcaattttcaaaatcaataagagtaacaaacttctggagctaactgt |
627 |
Q |
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| T |
33655267 |
gagcccttccatcggatgatggtgtttgaactgatgctggcaagctataatctgcaattttcaaaatcaataagagtaacaaacttctggagctaactgt |
33655366 |
T |
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| Q |
628 |
acaagatattgatgcaagagggttttattggtagtttagtag |
669 |
Q |
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| T |
33655367 |
acaagatattgatgcaggagggttttattggtaatttagtag |
33655408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 33654748 - 33655039
Alignment:
| Q |
9 |
aggttgacctgtttcttttatccagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactccc |
108 |
Q |
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| T |
33654748 |
aggttggcctgtttcttttctccagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactccc |
33654847 |
T |
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| Q |
109 |
ttcagtgatactacctttttctccgtctccattggaagttatatagtttatgttacggataactaccttccttgacgatttctttccatgtttcttgttg |
208 |
Q |
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| T |
33654848 |
ttcagtgatactacctttttctccgtctcccttggaagttatatagtttatgttacggataactactttccttgacgacttctttccatgtttcttgttg |
33654947 |
T |
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| Q |
209 |
cttcgctttgaattgtcatctgaatcactctcataagtagactcagaggatgcagttgactcgtcttcttcagagtgatccaatacctgaga |
300 |
Q |
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| T |
33654948 |
cttcgctttgaattgtcatctgaatcactctcataagtagactcagaggatgcagttgactcgtcttcttcagagtgatccaatacctgaga |
33655039 |
T |
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