View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5859-Insertion-5 (Length: 715)

Name: NF5859-Insertion-5
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5859-Insertion-5
NF5859-Insertion-5
[»] chr5 (10 HSPs)
chr5 (9-715)||(15486046-15486748)
chr5 (603-658)||(10205024-10205079)
chr5 (431-470)||(16773893-16773932)
chr5 (431-467)||(8278226-8278262)
chr5 (433-468)||(30109262-30109297)
chr5 (438-468)||(12877781-12877811)
chr5 (431-469)||(28285339-28285377)
chr5 (433-470)||(21589374-21589411)
chr5 (433-470)||(24907575-24907612)
chr5 (433-470)||(29075867-29075904)
[»] chr8 (12 HSPs)
chr8 (533-597)||(10723795-10723859)
chr8 (431-470)||(8485085-8485124)
chr8 (431-468)||(44864217-44864254)
chr8 (438-469)||(7347924-7347955)
chr8 (431-470)||(28783146-28783185)
chr8 (431-470)||(29858000-29858039)
chr8 (431-469)||(1100584-1100622)
chr8 (431-469)||(3624666-3624704)
chr8 (432-470)||(16852426-16852464)
chr8 (431-469)||(44780065-44780103)
chr8 (432-461)||(29431106-29431135)
chr8 (432-469)||(40791847-40791884)
[»] chr7 (17 HSPs)
chr7 (603-672)||(7386188-7386257)
chr7 (533-599)||(28907659-28907724)
chr7 (423-470)||(43590993-43591040)
chr7 (432-470)||(41487445-41487483)
chr7 (433-470)||(3968607-3968644)
chr7 (433-470)||(30579421-30579458)
chr7 (432-469)||(41519217-41519254)
chr7 (431-467)||(2446397-2446433)
chr7 (431-471)||(48772023-48772063)
chr7 (604-691)||(7246385-7246472)
chr7 (431-470)||(11720911-11720950)
chr7 (431-470)||(27313685-27313724)
chr7 (533-572)||(34746875-34746914)
chr7 (431-469)||(45228976-45229014)
chr7 (431-468)||(5668522-5668559)
chr7 (433-470)||(21558214-21558251)
chr7 (566-603)||(48771132-48771169)
[»] chr2 (8 HSPs)
chr2 (615-694)||(13179594-13179673)
chr2 (432-469)||(38854414-38854451)
chr2 (431-470)||(24144760-24144799)
chr2 (431-470)||(25637237-25637276)
chr2 (431-470)||(34310837-34310876)
chr2 (431-469)||(1435150-1435188)
chr2 (431-469)||(26773088-26773126)
chr2 (432-470)||(37480161-37480199)
[»] chr1 (13 HSPs)
chr1 (603-656)||(14305205-14305258)
chr1 (620-670)||(15869681-15869731)
chr1 (432-470)||(36124919-36124957)
chr1 (432-469)||(12587356-12587393)
chr1 (547-604)||(14305544-14305600)
chr1 (432-470)||(3799992-3800030)
chr1 (527-593)||(3955532-3955597)
chr1 (431-469)||(6122881-6122919)
chr1 (431-469)||(7743276-7743314)
chr1 (533-599)||(33654288-33654353)
chr1 (438-471)||(7219876-7219909)
chr1 (432-469)||(25297859-25297896)
chr1 (433-470)||(50901667-50901704)
[»] chr6 (5 HSPs)
chr6 (431-471)||(18562589-18562629)
chr6 (432-470)||(24641142-24641180)
chr6 (433-470)||(18263926-18263963)
chr6 (431-470)||(8597698-8597737)
chr6 (431-470)||(21418556-21418595)
[»] scaffold0258 (1 HSPs)
scaffold0258 (431-470)||(15274-15313)
[»] chr4 (15 HSPs)
chr4 (603-658)||(9081551-9081606)
chr4 (432-469)||(37720166-37720203)
chr4 (438-470)||(12793869-12793901)
chr4 (438-469)||(7949412-7949443)
chr4 (431-470)||(17816595-17816634)
chr4 (431-470)||(49938787-49938826)
chr4 (431-469)||(8030155-8030193)
chr4 (432-470)||(29312216-29312254)
chr4 (433-471)||(47230600-47230638)
chr4 (439-469)||(47386750-47386780)
chr4 (433-470)||(28635782-28635819)
chr4 (442-471)||(35818174-35818203)
chr4 (431-468)||(37274410-37274447)
chr4 (431-468)||(51346429-51346466)
chr4 (432-469)||(56429888-56429925)
[»] chr3 (12 HSPs)
chr3 (552-603)||(21138814-21138865)
chr3 (510-601)||(55258383-55258474)
chr3 (431-469)||(52769934-52769972)
chr3 (430-470)||(14339696-14339736)
chr3 (538-598)||(21409431-21409491)
chr3 (438-469)||(54990789-54990820)
chr3 (510-601)||(55258642-55258733)
chr3 (431-469)||(2667949-2667987)
chr3 (431-469)||(8075078-8075116)
chr3 (431-469)||(36015535-36015573)
chr3 (431-469)||(49397492-49397530)
chr3 (432-469)||(10499061-10499098)
[»] scaffold0018 (1 HSPs)
scaffold0018 (533-583)||(32209-32259)


Alignment Details
Target: chr5 (Bit Score: 622; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 9 - 715
Target Start/End: Complemental strand, 15486748 - 15486046
Alignment:
Q  9 ttcttcagtcaaacatcacactaaagactcttgatctttcaggcaatcctgttggagatgaaggagctaaggtcagtcttaagttttcagatttattaca 108  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15486748 ttcttcagtcaaacatcacactgaagactcttgatctttcaggcaatcctgttggagatgaaggagctaaggtcagtcttaagtgttcagatttattaca 15486649  T
Q  109 tctcttaatttgggatttggattaattactattccttcttagtatttctctaaatttatctaattgagttgcctcaactacatacccgaaataaaacata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15486648 tctcttaatttgggatttggattaattactattccttcttagtatttctctaaatttatctaattgagttgcctcaactacatacccgaaataaaacata 15486549  T
Q  209 aataatctttagcacatcgactcccctttattctacacgtttgtactaatagtgatggaggacaaaatgagactaatcttatgtgggaattttgtaattt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  15486548 aataatctttagcacatcgactcccctttattctacacgtttgtactaatagtgatggaggacaaaatgggactaatcttatgtgggaattttgttattt 15486449  T
Q  309 catgnnnnnnnnnnnnnnnnggctgtttactttgcaatcaaatatagtattgcatattatccaaaagaatgccgaaaatcattttattggagtttaatct 408  Q
    ||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15486448 catgttttttttttttt---ggctgtttactttgcaatcaaatatagtattgcatattatccaaaagaatgccgaaaatcattttattggagtttaat-t 15486353  T
Q  409 taataggtcaaaccaagttaagttttttatttgaagaagctaaattagcccacctaaattggtcaaaccaagttaagttataacttacttttggaattaa 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15486352 taataggtcaaaccaagttaagttttttatttgaagaagctaaattagcccacctaaattggtcaaaccaagttaagttataacttacttttggaattaa 15486253  T
Q  509 ttaattgttgacgttgtgtggttctagataaaaggatgagagtaaataataagaactttgaatataattgataataacttgatactgacttgatagataa 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15486252 ttaattgttgacgttgtgtggttctagataaaaggatgagagtaaataataagaactttgaatataattgataataacttgataccgacttgatagataa 15486153  T
Q  609 tcttagatatgctaagattgaaaactgatcctaggagataaaccaagatactttaagatattatgagatattattttattttctaaacattaatcaaacc 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15486152 tcttagatatgctaagattgaaaactgatcctaggagataaaccaagatactctaagatattatgagatattattttattttctaaacattaatcaaacc 15486053  T
Q  709 tactgtg 715  Q
    |||||||    
T  15486052 tactgtg 15486046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 603 - 658
Target Start/End: Original strand, 10205024 - 10205079
Alignment:
Q  603 agataatcttagatatgctaagattgaaaactgatcctaggagataaaccaagata 658  Q
    ||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||    
T  10205024 agataatctaagatatgctaagattgaaaactaatcctaggggctaaaccaagata 10205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 16773932 - 16773893
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  16773932 ttttttttttgaagaagctaaattagcccacctaaattgg 16773893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 467
Target Start/End: Original strand, 8278226 - 8278262
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaat 467  Q
    |||||| ||||||||||||||||||||||||||||||    
T  8278226 ttttttttttgaagaagctaaattagcccacctaaat 8278262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 468
Target Start/End: Original strand, 30109262 - 30109297
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaatt 468  Q
    |||| |||||||||||||||||||||||||||||||    
T  30109262 ttttttttgaagaagctaaattagcccacctaaatt 30109297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 468
Target Start/End: Complemental strand, 12877811 - 12877781
Alignment:
Q  438 tttgaagaagctaaattagcccacctaaatt 468  Q
    |||||||||||||||||||||||||||||||    
T  12877811 tttgaagaagctaaattagcccacctaaatt 12877781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 28285377 - 28285339
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  28285377 ttttttttttgaagaagctaaattagcccacccaaattg 28285339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 21589411 - 21589374
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  21589411 ttttttttgaagaagctaaactagcccacctaaattgg 21589374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 24907612 - 24907575
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  24907612 ttttttttgaataagctaaattagcccacctaaattgg 24907575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 29075904 - 29075867
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  29075904 ttttttttgaagaagctaaattagcccatctaaattgg 29075867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 533 - 597
Target Start/End: Original strand, 10723795 - 10723859
Alignment:
Q  533 tagataaaaggatgagagtaaataataagaactttgaatataattgataataacttgatactgac 597  Q
    |||||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  10723795 tagataaatggacgagagaaaataataagaactttgaatattattgataataacttgatactgac 10723859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 8485124 - 8485085
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  8485124 ttttttttttgaagaagctaaattagcccacctaaattgg 8485085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 44864217 - 44864254
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaatt 468  Q
    |||||| |||||||||||||||||||||||||||||||    
T  44864217 ttttttttttgaagaagctaaattagcccacctaaatt 44864254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 469
Target Start/End: Complemental strand, 7347955 - 7347924
Alignment:
Q  438 tttgaagaagctaaattagcccacctaaattg 469  Q
    ||||||||||||||||||||||||||||||||    
T  7347955 tttgaagaagctaaattagcccacctaaattg 7347924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 28783185 - 28783146
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  28783185 ttttttttttgaagaagctaaattagcccacccaaattgg 28783146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 29858000 - 29858039
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  29858000 ttttttttttgaaaaagctaaattagcccacctaaattgg 29858039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 1100622 - 1100584
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  1100622 ttttttttttgaagaagctaaattagcccatctaaattg 1100584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 3624704 - 3624666
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  3624704 ttttttttttgaaaaagctaaattagcccacctaaattg 3624666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 16852464 - 16852426
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  16852464 tttttttttgaagaagctaaaatagcccacctaaattgg 16852426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 44780065 - 44780103
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  44780065 ttttttttttgaagaagctaaattagcccacccaaattg 44780103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 461
Target Start/End: Complemental strand, 29431135 - 29431106
Alignment:
Q  432 tttttatttgaagaagctaaattagcccac 461  Q
    ||||||||||||||||||||||||||||||    
T  29431135 tttttatttgaagaagctaaattagcccac 29431106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 40791847 - 40791884
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattg 469  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  40791847 tttttttttgaagaagctaaattagcccacttaaattg 40791884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 672
Target Start/End: Complemental strand, 7386257 - 7386188
Alignment:
Q  603 agataatcttagatatgctaagattgaaaactgatcctaggagataaaccaagatactttaagatattat 672  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| || ||||||| | | |||||||||    
T  7386257 agataatctaagatatgctaagattgaaaactgaacctaggagattaatcaagatattatgagatattat 7386188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 533 - 599
Target Start/End: Original strand, 28907659 - 28907724
Alignment:
Q  533 tagataaaaggatgagagtaaataataagaactttgaatataattgataataacttgatactgactt 599  Q
    |||||||||||||||||  ||||||||||||||| |||||| || ||||||||||||||||| ||||    
T  28907659 tagataaaaggatgagaa-aaataataagaacttcgaatattatcgataataacttgatactaactt 28907724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 470
Target Start/End: Complemental strand, 43591040 - 43590993
Alignment:
Q  423 aagttaagttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  43591040 aagttaatttttttttttgaagaagctaaattagcccaccttaattgg 43590993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 41487483 - 41487445
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  41487483 tttttttttgaagaagctaaattagcccacctaaattgg 41487445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 470
Target Start/End: Original strand, 3968607 - 3968644
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||||||||||||||||||||||||||| |||||||    
T  3968607 ttttatttgaagaagctaaattagcccacccaaattgg 3968644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 30579458 - 30579421
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||| |||||||||||||||||||||||||||||||||    
T  30579458 ttttttttgaagaagctaaattagcccacctaaattgg 30579421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 41519217 - 41519254
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattg 469  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  41519217 tttttttttgaagaagctaaattagcccacctaaattg 41519254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 467
Target Start/End: Complemental strand, 2446433 - 2446397
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaat 467  Q
    |||||| ||||||||||||||||||||||||||||||    
T  2446433 ttttttttttgaagaagctaaattagcccacctaaat 2446397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 48772063 - 48772023
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattggt 471  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  48772063 tttttttttttaagaagctaaattagcccacctaaattggt 48772023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 691
Target Start/End: Complemental strand, 7246472 - 7246385
Alignment:
Q  604 gataatcttagatatgctaagattgaaaactgatcctaggagataaaccaagatactttaagatattatgagatattattttattttc 691  Q
    |||||||| ||||||||||||||| ||||||||||| || |||| ||| |||||| | ||||  || ||||||| || | ||||||||    
T  7246472 gataatctaagatatgctaagattcaaaactgatccaagaagattaacaaagatattctaagccataatgagatgttctcttattttc 7246385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 11720911 - 11720950
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  11720911 ttttttttttgaagaagctaaattagcccacccaaattgg 11720950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 27313685 - 27313724
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  27313685 ttttttttttgaagaagctaaattagctcacctaaattgg 27313724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 572
Target Start/End: Original strand, 34746875 - 34746914
Alignment:
Q  533 tagataaaaggatgagagtaaataataagaactttgaata 572  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  34746875 tagataaaaggaggagagaaaataataagaactttgaata 34746914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 45228976 - 45229014
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  45228976 ttttttttttgaagaagctaaattagcccacttaaattg 45229014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 5668522 - 5668559
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaatt 468  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  5668522 ttttttttttgaagaagctaaattagcccacataaatt 5668559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 21558251 - 21558214
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  21558251 ttttttttgaagaagctaaattaacccacctaaattgg 21558214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Original strand, 48771132 - 48771169
Alignment:
Q  566 ttgaatataattgataataacttgatactgacttgata 603  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  48771132 ttgaatatcattgataatcacttgatactgacttgata 48771169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 615 - 694
Target Start/End: Complemental strand, 13179673 - 13179594
Alignment:
Q  615 atatgctaagattgaaaactgatcctaggagataaaccaagatactttaagatattatgagatattattttattttctaa 694  Q
    ||||||| | |||| |||||||||||||||||||||| |||||| |||   ||| ||| |||||||||||||||||||||    
T  13179673 atatgcttatattggaaactgatcctaggagataaacaaagataatttggcataatatcagatattattttattttctaa 13179594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 38854414 - 38854451
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattg 469  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  38854414 tttttttttgaagaagctaaattagcccacctaaattg 38854451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 24144799 - 24144760
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  24144799 ttttttttttgaggaagctaaattagcccacctaaattgg 24144760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 25637276 - 25637237
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  25637276 ttttttttttgaagaagttaaattagcccacctaaattgg 25637237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 34310876 - 34310837
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  34310876 ttttttttttgaagaagctaaattaacccacctaaattgg 34310837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 1435188 - 1435150
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  1435188 ttttttttttgaagaagctaaattagcccacccaaattg 1435150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 26773088 - 26773126
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  26773088 ttttttttttgaagaagctaaattagcccacccaaattg 26773126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 37480199 - 37480161
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  37480199 tttttttttgaagaagctaaattagcccacccaaattgg 37480161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 603 - 656
Target Start/End: Complemental strand, 14305258 - 14305205
Alignment:
Q  603 agataatcttagatatgctaagattgaaaactgatcctaggagataaaccaaga 656  Q
    ||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||    
T  14305258 agataatctaagtcatgctaagattgaaaactgatcccaggagataaaccaaga 14305205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 670
Target Start/End: Complemental strand, 15869731 - 15869681
Alignment:
Q  620 ctaagattgaaaactgatcctaggagataaaccaagatactttaagatatt 670  Q
    |||||||||||||||||||||| |||||||||||| ||| ||| |||||||    
T  15869731 ctaagattgaaaactgatcctaagagataaaccaatatattttcagatatt 15869681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 36124957 - 36124919
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36124957 tttttttttgaagaagctaaattagcccacctaaattgg 36124919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 469
Target Start/End: Complemental strand, 12587393 - 12587356
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattg 469  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  12587393 tttttttttgaagaagctaaattagcccacctaaattg 12587356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 604
Target Start/End: Complemental strand, 14305600 - 14305544
Alignment:
Q  547 agagtaaataataagaactttgaatataattgataataacttgatactgacttgatag 604  Q
    |||| ||||| ||||||||| |||||| |||||||||||||||||| |||||||||||    
T  14305600 agagaaaatagtaagaactt-gaatattattgataataacttgatattgacttgatag 14305544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 3800030 - 3799992
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  3800030 ttttttttttaagaagctaaattagcccacctaaattgg 3799992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 593
Target Start/End: Original strand, 3955532 - 3955597
Alignment:
Q  527 tggttctagataaaaggatgagagtaaataataagaactttgaatataattgataataacttgatac 593  Q
    ||||| |||||||||  | ||||| |||||||||||||||| |||||  ||||||||||||||||||    
T  3955532 tggttttagataaaacaaggagag-aaataataagaactttcaatattgttgataataacttgatac 3955597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 6122919 - 6122881
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  6122919 ttttttttttgaagaagctaaattagcccacccaaattg 6122881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 7743276 - 7743314
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  7743276 ttttttgtttgaagaagctaagttagcccacctaaattg 7743314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 599
Target Start/End: Original strand, 33654288 - 33654353
Alignment:
Q  533 tagataaaaggatgagagtaaataataagaactttgaatataattgataataacttgatactgactt 599  Q
    |||||||| ||| ||||| || ||||||||||||||||| | |||||||||||| |||| |||||||    
T  33654288 tagataaatggaggagag-aagtaataagaactttgaatgtgattgataataacatgatgctgactt 33654353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 471
Target Start/End: Original strand, 7219876 - 7219909
Alignment:
Q  438 tttgaagaagctaaattagcccacctaaattggt 471  Q
    ||||||||||||||||||| ||||||||||||||    
T  7219876 tttgaagaagctaaattagtccacctaaattggt 7219909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 469
Target Start/End: Complemental strand, 25297896 - 25297859
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattg 469  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  25297896 tttttttttgaagaagctaaattatcccacctaaattg 25297859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 50901704 - 50901667
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  50901704 tttttttttaagaagctaaattagcccacctaaattgg 50901667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 18562589 - 18562629
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattggt 471  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  18562589 ttttttttttgaagaagctaaattagcccacctaaattggt 18562629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 470
Target Start/End: Original strand, 24641142 - 24641180
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  24641142 tttttatttgaagaagttaaattagcccacctaaattgg 24641180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 18263963 - 18263926
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18263963 ttttttttgaagaagctaaattagcccacctaaattgg 18263926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 8597698 - 8597737
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  8597698 ttttttttttgaagaagctaaattagcccacccaaattgg 8597737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 21418595 - 21418556
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  21418595 ttttttttttgaagaagctaaattagcccaccttaattgg 21418556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 15274 - 15313
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  15274 ttttttctttgaagaagctaaattagcccacctaaattgg 15313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 658
Target Start/End: Complemental strand, 9081606 - 9081551
Alignment:
Q  603 agataatcttagatatgctaagattgaaaactgatcctaggagataaaccaagata 658  Q
    |||| |||| |||||||||||||||||||||||||| ||||| ||| |||||||||    
T  9081606 agatcatctaagatatgctaagattgaaaactgatcttaggatatacaccaagata 9081551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 37720166 - 37720203
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattg 469  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  37720166 tttttgtttgaagaagctaaattagcccacctaaattg 37720203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 470
Target Start/End: Original strand, 12793869 - 12793901
Alignment:
Q  438 tttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||||||||||||||||||||||||||||||    
T  12793869 tttgaagaagctaaattagcccacctaaattgg 12793901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 469
Target Start/End: Original strand, 7949412 - 7949443
Alignment:
Q  438 tttgaagaagctaaattagcccacctaaattg 469  Q
    ||||||||||||||||||||||||||||||||    
T  7949412 tttgaagaagctaaattagcccacctaaattg 7949443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 17816634 - 17816595
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  17816634 ttttttttttgaagaagctaaattagcctacctaaattgg 17816595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 49938787 - 49938826
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  49938787 ttttttttttgaagaagctaaattaacccacctaaattgg 49938826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 8030155 - 8030193
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  8030155 ttttttttttgaagaagctaaattagcccacccaaattg 8030193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 470
Target Start/End: Original strand, 29312216 - 29312254
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  29312216 tttttttttgaaaaagctaaattagcccacctaaattgg 29312254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 471
Target Start/End: Complemental strand, 47230638 - 47230600
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattggt 471  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  47230638 ttttttttgaagaagataaattagcccacctaaattggt 47230600  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 469
Target Start/End: Original strand, 47386750 - 47386780
Alignment:
Q  439 ttgaagaagctaaattagcccacctaaattg 469  Q
    |||||||||||||||||||||||||||||||    
T  47386750 ttgaagaagctaaattagcccacctaaattg 47386780  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 28635819 - 28635782
Alignment:
Q  433 ttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  28635819 ttttttttgaagaagctaaattagcccacccaaattgg 28635782  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 471
Target Start/End: Complemental strand, 35818203 - 35818174
Alignment:
Q  442 aagaagctaaattagcccacctaaattggt 471  Q
    ||||||||||||||||||||||||||||||    
T  35818203 aagaagctaaattagcccacctaaattggt 35818174  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 37274410 - 37274447
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaatt 468  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  37274410 ttttttttttgaagaagctaaattagcccacttaaatt 37274447  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 51346429 - 51346466
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaatt 468  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  51346429 ttttttttttgaagaagctaaactagcccacctaaatt 51346466  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 56429888 - 56429925
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattg 469  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  56429888 ttttttttttaagaagctaaattagcccacctaaattg 56429925  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 21138814 - 21138865
Alignment:
Q  552 aaataataagaactttgaatataattgataataacttgatactgacttgata 603  Q
    |||||||||||||||||||||  |||| |||||||||||||| |||||||||    
T  21138814 aaataataagaactttgaatactattgttaataacttgatacagacttgata 21138865  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 601
Target Start/End: Complemental strand, 55258474 - 55258383
Alignment:
Q  510 taattgttgacgttgtgtggttctagataaaaggatgagagtaaataataagaactttgaatataattgataataacttgatactgacttga 601  Q
    |||||||||| |||||| | || ||||| ||| |||| ||| ||||||||| || | |||| || ||||||||| |||||||||||||||||    
T  55258474 taattgttgaagttgtgggattttagattaaaagatgggagaaaataataaaaattgtgaaaattattgataattacttgatactgacttga 55258383  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 52769934 - 52769972
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  52769934 ttttttttttgaagaagctaaattagcccacctaaattg 52769972  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 14339736 - 14339696
Alignment:
Q  430 gttttttatttgaagaagctaaattagcccacctaaattgg 470  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  14339736 gttttttttttgaagaagctaaattagcccaccttaattgg 14339696  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 21409431 - 21409491
Alignment:
Q  538 aaaaggatgagagtaaataataagaactttgaatataattgataataacttgatactgact 598  Q
    ||||||| || || ||||||||||||||||| |||| ||||||||||| |||||| |||||    
T  21409431 aaaaggaggacagaaaataataagaactttggatattattgataataatttgatattgact 21409491  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 469
Target Start/End: Complemental strand, 54990820 - 54990789
Alignment:
Q  438 tttgaagaagctaaattagcccacctaaattg 469  Q
    ||||||||||||||||||||||||||||||||    
T  54990820 tttgaagaagctaaattagcccacctaaattg 54990789  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 601
Target Start/End: Complemental strand, 55258733 - 55258642
Alignment:
Q  510 taattgttgacgttgtgtggttctagataaaaggatgagagtaaataataagaactttgaatataattgataataacttgatactgacttga 601  Q
    |||||||||| |||||| | || ||||| ||| |||| ||| ||||||||| || | |||| |  ||||||||| |||||||||||||||||    
T  55258733 taattgttgaagttgtgggattttagattaaaagatgggagaaaataataaaaattgtgaaaaatattgataattacttgatactgacttga 55258642  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 2667987 - 2667949
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  2667987 ttttttttttgaagaagctaaactagcccacctaaattg 2667949  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 8075078 - 8075116
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  8075078 ttttttttttgaagaagctaaattagcccacccaaattg 8075116  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 36015573 - 36015535
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  36015573 ttttttttttgaagaagcaaaattagcccacctaaattg 36015535  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 49397492 - 49397530
Alignment:
Q  431 ttttttatttgaagaagctaaattagcccacctaaattg 469  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  49397492 ttttttttttgaagaagctaaattagtccacctaaattg 49397530  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 10499061 - 10499098
Alignment:
Q  432 tttttatttgaagaagctaaattagcccacctaaattg 469  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  10499061 tttttttttgaagaagctaaattagcccacccaaattg 10499098  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 583
Target Start/End: Complemental strand, 32259 - 32209
Alignment:
Q  533 tagataaaaggatgagagtaaataataagaactttgaatataattgataat 583  Q
    |||||||||||| ||||| |||||||| ||||||||||||| |||||||||    
T  32259 tagataaaaggaggagagaaaataatatgaactttgaatatcattgataat 32209  T

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