View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5859-Insertion-7 (Length: 580)

Name: NF5859-Insertion-7
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5859-Insertion-7
NF5859-Insertion-7
[»] chr2 (5 HSPs)
chr2 (9-333)||(40878533-40878857)
chr2 (433-482)||(13587407-13587456)
chr2 (433-482)||(13588099-13588148)
chr2 (433-470)||(32343005-32343042)
chr2 (443-480)||(35997684-35997721)
[»] chr6 (7 HSPs)
chr6 (433-505)||(173493-173565)
chr6 (433-495)||(15717444-15717506)
chr6 (433-495)||(17199391-17199453)
chr6 (434-495)||(17199287-17199348)
chr6 (433-495)||(17199600-17199662)
chr6 (443-493)||(30260259-30260309)
chr6 (444-482)||(31153933-31153971)
[»] chr3 (11 HSPs)
chr3 (433-505)||(31903345-31903417)
chr3 (433-495)||(36591110-36591172)
chr3 (433-505)||(33543338-33543410)
chr3 (437-481)||(11235498-11235542)
chr3 (433-495)||(33544262-33544324)
chr3 (437-495)||(36589998-36590056)
chr3 (433-495)||(35343363-35343425)
chr3 (443-482)||(21170744-21170783)
chr3 (448-495)||(30162292-30162339)
chr3 (443-480)||(47094708-47094745)
chr3 (443-480)||(53136492-53136529)
[»] chr7 (11 HSPs)
chr7 (433-505)||(25965535-25965607)
chr7 (433-495)||(25964493-25964555)
chr7 (433-495)||(33161765-33161827)
chr7 (433-505)||(34237819-34237885)
chr7 (433-495)||(34239255-34239317)
chr7 (433-482)||(26403782-26403831)
chr7 (444-482)||(43655455-43655493)
chr7 (443-482)||(28346593-28346632)
chr7 (443-482)||(40754837-40754876)
chr7 (433-473)||(26405751-26405791)
chr7 (446-482)||(40756970-40757006)
[»] chr8 (5 HSPs)
chr8 (433-495)||(13904207-13904269)
chr8 (433-495)||(13907242-13907304)
chr8 (433-495)||(11918694-11918756)
chr8 (443-482)||(7780202-7780241)
chr8 (443-482)||(7827168-7827207)
[»] chr5 (8 HSPs)
chr5 (451-505)||(7672328-7672382)
chr5 (433-495)||(11785495-11785557)
chr5 (443-482)||(41555192-41555231)
chr5 (433-495)||(1666070-1666135)
chr5 (443-482)||(5625456-5625495)
chr5 (443-482)||(20875076-20875115)
chr5 (443-482)||(25062297-25062336)
chr5 (443-482)||(27822780-27822819)
[»] chr4 (4 HSPs)
chr4 (433-495)||(35012006-35012068)
chr4 (437-494)||(13210593-13210650)
chr4 (443-481)||(45048747-45048785)
chr4 (443-480)||(43724449-43724486)
[»] chr1 (5 HSPs)
chr1 (433-495)||(34660652-34660714)
chr1 (433-495)||(34661731-34661793)
chr1 (443-480)||(48344318-48344355)
chr1 (443-480)||(48350690-48350727)
chr1 (18-46)||(40037816-40037844)
[»] scaffold0360 (2 HSPs)
scaffold0360 (443-482)||(7655-7694)
scaffold0360 (443-482)||(10681-10720)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-166; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 9 - 333
Target Start/End: Complemental strand, 40878857 - 40878533
Alignment:
Q  9 gtccatttccttaataattaagctttgctaaaatagttccgataggtactgttttaatttgaaatctattgaactatttctgcaacttccttatcaaagt 108  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878857 gtccatttccctaataattaagctttgctaaaatagttccgataggtactgttttaatttgaaatctattgaactatttctgcaacttccttatcaaagt 40878758  T
Q  109 taaggcataggatggatgtagaggaatatacaaagaggctattgaataactcattcttcctgttggtagtgtttgggaaagataattcaataactgtgaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  40878757 taaggcataggatggatgtagaggaatatacaaagaggctattgaataactcattcttcctgtaggtagtgtttgggaaagataattcaataactgggaa 40878658  T
Q  209 gcaccgacacatacacaactataccgacaacaatttgagaaatgaagttattgaatgtcgcaatcatatgtgttggtgctgtggcgtcgtactctagaca 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  40878657 gcaccgacacatacacaactataccgacaacaatttgagaaatgaagtaattgaatgtggcaatcacatgtgttggtgctgtggcgtcgtactctagaca 40878558  T
Q  309 catcttcattataaagtgttagtgc 333  Q
    || ||||||||||||||||||||||    
T  40878557 cagcttcattataaagtgttagtgc 40878533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 13587407 - 13587456
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  13587407 gtcctttagcgcgttcccgccatctgaaacggcgggactggccgccggtc 13587456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 13588148 - 13588099
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||| | ||||||||||||| |||||||| |||||||||||||||||    
T  13588148 gtcctttagcgcgttcccgccatctgaaacggtgggactggccgccggtc 13588099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 32343042 - 32343005
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggac 470  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  32343042 gtcctttagcgcgttcccgccatttgaaacggcgggac 32343005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 480
Target Start/End: Original strand, 35997684 - 35997721
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccgg 480  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  35997684 gcgttcccgccatctgaaatggcgggactggccgccgg 35997721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 433 - 505
Target Start/End: Original strand, 173493 - 173565
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 505  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  173493 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtccgacacgtgtcacgatctgacag 173565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 15717506 - 15717444
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  15717506 gtccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 15717444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 17199391 - 17199453
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  17199391 gtccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 17199453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 434 - 495
Target Start/End: Original strand, 17199287 - 17199348
Alignment:
Q  434 tccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  17199287 tccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 17199348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 17199662 - 17199600
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||||||||||    
T  17199662 gtccttttgtgcgttcctgccatttgaaacggcgggactggccgctggtctgacacgtgtcac 17199600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 443 - 493
Target Start/End: Original strand, 30260259 - 30260309
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtc 493  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  30260259 gcgttcccgccatttgaaacggcgggattggccgccggtctaacacatgtc 30260309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 482
Target Start/End: Original strand, 31153933 - 31153971
Alignment:
Q  444 cgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  31153933 cgttcccgccatttgaaacggcggaactggccgccggtc 31153971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 433 - 505
Target Start/End: Complemental strand, 31903417 - 31903345
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 505  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  31903417 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtccgacacgtgtcacgatctgacag 31903345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 36591172 - 36591110
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  36591172 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtctgacacgtgtcac 36591110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 433 - 505
Target Start/End: Original strand, 33543338 - 33543410
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 505  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  33543338 gtccttttgtgcgttcccgctgttttaaatggcgggactggccgccggtccgacacgtgtcacgatctgacag 33543410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 437 - 481
Target Start/End: Original strand, 11235498 - 11235542
Alignment:
Q  437 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggt 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11235498 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggt 11235542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 33544324 - 33544262
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| ||||||  |||||||||||    
T  33544324 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccaccggtctgacacgtgtcac 33544262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 36589998 - 36590056
Alignment:
Q  437 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||||||||    
T  36589998 ttttgtgcgttcccgccatttgaaacggcgggactagccgtcggtctgacacgtgtcac 36590056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 35343363 - 35343425
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||| | ||||| ||||||||||||||| ||||||||||||||||||  |||| ||||||    
T  35343363 gtcctttagcgcgtttccgccatttgaaacgacgggactggccgccggtctgacacatgtcac 35343425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 21170744 - 21170783
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  21170744 gcgttcccgccatctgaaatggcgggactggccgccggtc 21170783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 495
Target Start/End: Original strand, 30162292 - 30162339
Alignment:
Q  448 cccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    |||||||||||||||||||||||||||||||  ||  |||||||||||    
T  30162292 cccgccatttgaaacggcgggactggccgccaatctgacacgtgtcac 30162339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 480
Target Start/End: Original strand, 47094708 - 47094745
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccgg 480  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  47094708 gcgttcccgccatctgaaatggcgggactggccgccgg 47094745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 480
Target Start/End: Original strand, 53136492 - 53136529
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccgg 480  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  53136492 gcgttcccgccatctgaaatggcgggactggccgccgg 53136529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 433 - 505
Target Start/End: Complemental strand, 25965607 - 25965535
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 505  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||||| ||||||    
T  25965607 gtccttttgtgcgttcccgccatttgaaacggcgggactggtcgacggttcgacacgtgtcacgatgtgacag 25965535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 25964493 - 25964555
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  25964493 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtctgacacgtgtcac 25964555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 33161827 - 33161765
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  33161827 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtctgacacgtgtcac 33161765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 433 - 505
Target Start/End: Original strand, 34237819 - 34237885
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 505  Q
    |||||||||||||||||||||||||||||||||      |||||||||||| |||||||||||||||||||||    
T  34237819 gtccttttgtgcgttcccgccatttgaaacggc------ggccgccggtccgacacgtgtcacgatctgacag 34237885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 34239317 - 34239255
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||   |||||||||||    
T  34239317 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtttgacacgtgtcac 34239255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 26403782 - 26403831
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  26403782 gtccttttgtgcgttcccgccatctgaaacggcaggactggccgccggtc 26403831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 482
Target Start/End: Complemental strand, 43655493 - 43655455
Alignment:
Q  444 cgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  43655493 cgttcccgccatctgaaacggcgggactggccgccggtc 43655455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 28346593 - 28346632
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  28346593 gcgttcccgccatctgaaatggcgggactggccgccggtc 28346632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 40754837 - 40754876
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  40754837 gcgttcccgccatctgaaatggcgggactggccgccggtc 40754876  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 26405791 - 26405751
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactgg 473  Q
    ||||||||||||||||||| ||| |||||||| ||||||||    
T  26405791 gtccttttgtgcgttcccgtcatctgaaacggggggactgg 26405751  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 40757006 - 40756970
Alignment:
Q  446 ttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  40757006 ttcccgccatctgaaatggcgggactggccgccggtc 40756970  T

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Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 13904207 - 13904269
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  13904207 gtccttttgtgcgttcccgccatttgaaacggcggaactggccgccggtctgacacgtgtcac 13904269  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 13907304 - 13907242
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  13907304 gtccttttgtgcgttcccgccctttgaaagggcgggactggccgccggtctgacacgtgtcac 13907242  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 11918694 - 11918756
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||||  |||| ||||||    
T  11918694 gtcctttagcgcgttcccgccatttgaaacggcgggactgaccgccggtctgacacatgtcac 11918756  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 7780202 - 7780241
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7780202 gcgttcccgccatctgaaatggcgggactggccgccggtc 7780241  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 7827168 - 7827207
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7827168 gcgttcccgccatctgaaatggcgggactggccgccggtc 7827207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 505
Target Start/End: Complemental strand, 7672382 - 7672328
Alignment:
Q  451 gccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 505  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  7672382 gccatttgaaacggcaggactggccgccggtccgacacgtgtcacgatctgacag 7672328  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 11785557 - 11785495
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    |||||||| |||||||||||| ||||||| ||||||| ||||||||||||  |||||||||||    
T  11785557 gtccttttctgcgttcccgccgtttgaaatggcgggattggccgccggtctgacacgtgtcac 11785495  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 41555192 - 41555231
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  41555192 gcgttcccgccatctgaaacggcgggactggccgccggtc 41555231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 1666070 - 1666135
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggac---tggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||| ||| |||| | |||||   ||||||||||||| |||||||||||    
T  1666070 gtccttttgtgcgttcccgccgtttcaaactgagggactggtggccgccggtccgacacgtgtcac 1666135  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 5625456 - 5625495
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  5625456 gcgttcccgccatctgaaatggcgggactggccgccggtc 5625495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 20875076 - 20875115
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  20875076 gcgttcccgccatctgaaatggcgggactggccgccggtc 20875115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Complemental strand, 25062336 - 25062297
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  25062336 gcgttcccgccatctgaaatggcgggactggccgccggtc 25062297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Complemental strand, 27822819 - 27822780
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  27822819 gcgttcccgccatctgaaatggcgggactggccgccggtc 27822780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 35012006 - 35012068
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  35012006 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtcggacacgtgtcac 35012068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 437 - 494
Target Start/End: Complemental strand, 13210650 - 13210593
Alignment:
Q  437 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtca 494  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  13210650 ttttgtgcgttcccgccatttgaaacggcgggactgaccgccggtctgacacgtgtca 13210593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 481
Target Start/End: Complemental strand, 45048785 - 45048747
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggt 481  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  45048785 gcgttcccgccatctgaaatggcgggactggccgccggt 45048747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 480
Target Start/End: Original strand, 43724449 - 43724486
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccgg 480  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  43724449 gcgttcccgccatctgaaatggcgggactggccgccgg 43724486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 34660652 - 34660714
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  34660652 gtcctttagcgcgttcccgccatttgaaacggcgggactggccgccggtctgacacatgtcac 34660714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 34661793 - 34661731
Alignment:
Q  433 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 495  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  34661793 gtcctttagcgcgttcccgccatttgaaacggcgggactggccgccggtctgacacatgtcac 34661731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 480
Target Start/End: Original strand, 48344318 - 48344355
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccgg 480  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  48344318 gcgttcccgccacctgaaacggcgggactggccgccgg 48344355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 480
Target Start/End: Complemental strand, 48350727 - 48350690
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccgg 480  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  48350727 gcgttcccgccacctgaaacggcgggactggccgccgg 48350690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 40037816 - 40037844
Alignment:
Q  18 cttaataattaagctttgctaaaatagtt 46  Q
    |||||||||||||||||||||||||||||    
T  40037816 cttaataattaagctttgctaaaatagtt 40037844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 7655 - 7694
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7655 gcgttcccgccatctgaaatggcgggactggccgccggtc 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Complemental strand, 10720 - 10681
Alignment:
Q  443 gcgttcccgccatttgaaacggcgggactggccgccggtc 482  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  10720 gcgttcccgccatctgaaatggcgggactggccgccggtc 10681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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