View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5859-Insertion-8 (Length: 378)
Name: NF5859-Insertion-8
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5859-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 27 - 378
Target Start/End: Original strand, 41703940 - 41704291
Alignment:
| Q |
27 |
tataatacataacaagtgatattccacctcttgtttaccttggcactatacacaatccgaagacaccacctcttgtaatgtcattcttttttattgagta |
126 |
Q |
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| T |
41703940 |
tataatacataacaagtgatattccacctcttgtttaccttggcactatacacaatccgaagacaccacctcttgtaatgtcattcttttttattgagta |
41704039 |
T |
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| Q |
127 |
ccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatattgttagagtttgtta-aaagtagttactaattggttacaaa |
225 |
Q |
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| T |
41704040 |
ccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatattgttaaaagtagttactaattggttact-attagttacaaa |
41704138 |
T |
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| Q |
226 |
ttagttcatgtttgttagtttagctagttaagatcaatatataatgtgaacaacaaaaaattaaatcttacacatccaaattttagaatgcggaaaatgc |
325 |
Q |
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| T |
41704139 |
ttagttcatgtttgttagtttagctagttaagatcaatatataatgtgaacaacaaaaaattaaatcttacacatccaaattttagaatgcggaaaatgc |
41704238 |
T |
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| Q |
326 |
aagttcataacattttccctatcggattttaaaattcaaatgtgtaaaatgca |
378 |
Q |
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| T |
41704239 |
aagttcataacattttccctatcggattttaaaattcaaatgtgtaaaatgca |
41704291 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 33826623 - 33826671
Alignment:
| Q |
162 |
tataattagagaatcattagatattgttagagtttgttaaaagtagtta |
210 |
Q |
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| T |
33826623 |
tataattagtgaattgatagatattgttagagtttgttaaaagtagtta |
33826671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 10908947 - 10908990
Alignment:
| Q |
167 |
ttagagaatcattagatattgttagagtttgttaaaagtagtta |
210 |
Q |
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| T |
10908947 |
ttagagatttattagatattgttagagtttgttaaatgtagtta |
10908990 |
T |
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