View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5859_low_2 (Length: 478)
Name: NF5859_low_2
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5859_low_2 |
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| [»] scaffold0878 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 3 - 463
Target Start/End: Original strand, 31329401 - 31329860
Alignment:
| Q |
3 |
tgaaggttcatgttggatttgttgcatcgatgctgcagaaatgtcctggaattttgaggctttcgcttagaatggaaaggtgtgaaattttccagatcca |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329401 |
tgaaggttcatgttggatttgttgcatcgatgctgcagaaatgtcctgggattttgaggctttcgcttagaatggaaaggtgtgaaattttccagatcca |
31329500 |
T |
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| Q |
103 |
cgttaagaataagattaattgatgaattatataatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatgcgtaaatt |
202 |
Q |
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| T |
31329501 |
cgttaagaataagattaattgatgaattatatgatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatgcgtaaatt |
31329600 |
T |
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| Q |
203 |
gaaatatgtgtgttgatttctgaagatggatgcacnnnnnnnntagttataatctgaatctcaatttattaattaatcggtttggttataaaaggatgat |
302 |
Q |
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| T |
31329601 |
gaaatatgtgtgttgatttctgaagatggatgcacaaaaaaaatagttataatctgaatctcaatttattaattaatcggtttggttataaaaggatgat |
31329700 |
T |
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| Q |
303 |
gnnnnnnnttagatcttataaatgagattgtgtatcagatttgtttgnnnnnnnnnttgtatttatttatgttctaagatttgtgttgtattatttatat |
402 |
Q |
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| T |
31329701 |
gaaaaaaattagatcttataaatgagattgtgtatcagatttgtttg-aaaaaaaattgtatttatttatgttctaagatttgtgttgtattatttatat |
31329799 |
T |
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| Q |
403 |
gttctaagatttgtatagtattataatgttataaatctgatttgtttcattttgcagtgat |
463 |
Q |
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| T |
31329800 |
gttctaagatttgtataatattataatgttataaatctgatttgtttcattttgcagtgat |
31329860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0878 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0878
Description:
Target: scaffold0878; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 3 - 269
Target Start/End: Original strand, 2545 - 2810
Alignment:
| Q |
3 |
tgaaggttcatgttggatttgttgcatcgatgctgcagaaatgtcctggaattttgaggctttcgcttagaatggaaaggtgtgaaattttccagatcca |
102 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2545 |
tgaaggttcatgttggatttgttgtatcgatgctgcagaaatgtcatgggattttgaggctttcgcttagaatggaaaggtgtgaaattttccagatcca |
2644 |
T |
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| Q |
103 |
cgttaagaataagattaattgatgaattatataatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatgcgtaaatt |
202 |
Q |
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| T |
2645 |
cattaacaataagattaattgatgaattatataatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatggtcaaatt |
2744 |
T |
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| Q |
203 |
gaaatatgtgtgttgatttctgaagatggatgcacnnnnnnnntagttataatctgaatctcaattt |
269 |
Q |
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| T |
2745 |
gaaatatgtgtgttgatttctgaagatggatgcac-aaaaaaatagttataatctgaatctcaattt |
2810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 3 - 269
Target Start/End: Original strand, 27891858 - 27892122
Alignment:
| Q |
3 |
tgaaggttcatgttggatttgttgcatcgatgctgcagaaatgtcctggaattttgaggctttcgcttagaatggaaaggtgtgaaattttccagatcca |
102 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27891858 |
tgaaggttcatgttggatttgttgcatcgatgctgcataaatgtcttgggattttgaggctttcgcttagaatggaaaggtatgaaattttccagatcca |
27891957 |
T |
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| Q |
103 |
cgttaagaataagattaattgatgaattatataatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatgcgtaaatt |
202 |
Q |
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|||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27891958 |
cgttaacaataagattaat-gatgaattatataatattgattaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatgcgtaaatt |
27892056 |
T |
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| Q |
203 |
gaaatatgtgtgttgatttctgaagatggatgcacnnnnnnnntagttataatctgaatctcaattt |
269 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27892057 |
gaaatatgtgtgttgatttctgaagatggatgcac-aaaaaaatagttataatctgaatctcaattt |
27892122 |
T |
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