View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5859_low_3 (Length: 319)
Name: NF5859_low_3
Description: NF5859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5859_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 107 - 308
Target Start/End: Complemental strand, 1196854 - 1196653
Alignment:
| Q |
107 |
tgacccaccttggcaacgcatgataatagtattggtcttgattaacccattgggaatactgtattacctcaacaccacattcacaagccaatttcaacca |
206 |
Q |
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| T |
1196854 |
tgacacaccttggcaacgcatgataatagtattggtcttgattaacccattgggaatactctattacctcaacaccacattcacaagccaatttcaacca |
1196755 |
T |
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| Q |
207 |
aatatcagcatcctttgacatgtacctaaatacaaaaccgttcacattgagcttaaattttttgatagctaatctttggtcaagaaacattagcattctt |
306 |
Q |
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| T |
1196754 |
aatatcaacatcctttgacatgtacttaggtacaaaaccgtttaaatcgatcttaaattctttgataggcaaactttggtcacgaaacattagcattctt |
1196655 |
T |
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| Q |
307 |
ct |
308 |
Q |
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|| |
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| T |
1196654 |
ct |
1196653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 156 - 308
Target Start/End: Complemental strand, 1180463 - 1180311
Alignment:
| Q |
156 |
ttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaaatatcagcatcctttgacatgtacctaaatacaaaaccgttcacattg |
255 |
Q |
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| T |
1180463 |
ttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaattatcaacatcctttgacatgtacctaactacaaaaccattcaaattg |
1180364 |
T |
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| Q |
256 |
agcttaaattttttgatagctaatctttggtcaagaaacattagcattcttct |
308 |
Q |
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| T |
1180363 |
agcctaaattttttgatagccaaactttggtcacgaaacattagcattcttct |
1180311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 1197090 - 1196996
Alignment:
| Q |
17 |
accttaatgaatgctttggcgcacgaaaaagaa-tagttgcaggaca---gcttgcaagtaagatatttacatgagacgagaacaaatattcttt |
107 |
Q |
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| T |
1197090 |
accttaatgaatgctttggcgcatgaaaaagaaatagttgcaggacaacagcttgcaagtaagataattacatgagacgagaacaaatattcttt |
1196996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 1192288 - 1192245
Alignment:
| Q |
61 |
cagcttgcaagtaagatatttacatgagacgagaacaaatattc |
104 |
Q |
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| T |
1192288 |
cagcttgaaagtaagatatttacaagagacgagaataaatattc |
1192245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 1185834 - 1185801
Alignment:
| Q |
150 |
aacccattgggaatactgtattacctcaacacca |
183 |
Q |
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| T |
1185834 |
aacccattgggaatactctattacctcaacacca |
1185801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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