View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5860-Insertion-1 (Length: 1000)
Name: NF5860-Insertion-1
Description: NF5860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5860-Insertion-1 |
 | |
|
| [»] scaffold0627 (2 HSPs) |
| | |
|
| [»] scaffold0042 (5 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 562; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 390 - 999
Target Start/End: Original strand, 7094841 - 7095454
Alignment:
| Q |
390 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactgacactagagaaagtcccgacaacgttcatttatttcttaactaataactct |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094841 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactggcactagagaaagtctcgacaacgttcatttatttcttaactaataactct |
7094940 |
T |
|
| Q |
490 |
aatacctccaactcttattgaagtacttcaagcaacaggataatacaaattgaaagtttcctttcccacaattgaatacaggcctctaggtgcattcaga |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094941 |
aatacctccaactcttattgaagtacttcaagcaacaggataatacaaattgaaagtttcctttcccacaattgaatacaggcctctaggtgcattcaga |
7095040 |
T |
|
| Q |
590 |
cgttctgctcttgccacgtatactggatcctcctcttattatgccttgcagtccctagcaagatgtcctggctcacgacaacgataacatagatcgctct |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095041 |
cgttctgctcttgccacgtatactggatcctcctcttcttatgccttgcagtccctagcaagatgtcctggctcacgacaacgataacatagatcgctct |
7095140 |
T |
|
| Q |
690 |
ttgcggtacatttgtcagcatagtgtcctggatctccacacttgaaacaataaggctttggcttaaagaggtctcctctgtctcccgcactaggttccaa |
789 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095141 |
ttgcgatacatttgtcagcatagtgtcctggatctccacacttgaaacaataaggctttggcttaaagaggtctcctctgtctcccgcactaggttccaa |
7095240 |
T |
|
| Q |
790 |
tgaattattataatcccctttaggttctctagagtcctcgtagggcttcttcccatttcctcctcgtccacgattttgattgctggaacgagttggt-cc |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7095241 |
tgaattattataatcccctttaggttctctagagtcctcgtagggcttcttcccatttcctcctcgtccacgattttgattgctggaacgagttggtccc |
7095340 |
T |
|
| Q |
889 |
ccacagttattgttatt-cctcgagcaagtctcttattcttcatcgcttctatttctctacacttttctaccaaa-gatggaattgttgaatt-ccaatg |
985 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
7095341 |
ccacagttattgttattccctcgagcaagtctcttattcttcatcgcttctatttctctacatttttctaccaaaggatggaattgttgaattcccaatg |
7095440 |
T |
|
| Q |
986 |
gcattaccatgtct |
999 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7095441 |
gcattaccatgtct |
7095454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 7094458 - 7094774
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094458 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
7094557 |
T |
|
| Q |
107 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094558 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
7094657 |
T |
|
| Q |
207 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagnnnnnnnncaaaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7094658 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaat |
7094757 |
T |
|
| Q |
307 |
gatatattatcactcaa |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7094758 |
aatatattatcactcaa |
7094774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 7098191 - 7098476
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098191 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
7098290 |
T |
|
| Q |
107 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098291 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
7098390 |
T |
|
| Q |
207 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098391 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
7098476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 29821153 - 29821104
Alignment:
| Q |
391 |
cgggatcttacattctacccacctaaaatagtttcgtcctcgaaactgac |
440 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29821153 |
cgggatcttacattctacctacctaaaatagtttcgtcctcgaaactgac |
29821104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 29821301 - 29821255
Alignment:
| Q |
244 |
acactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
29821301 |
acactatttaa--attagtataatgaattttggctatataatttgaaag |
29821255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 390 - 999
Target Start/End: Complemental strand, 8376960 - 8376347
Alignment:
| Q |
390 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactgacactagagaaagtcccgacaacgttcatttatttcttaactaataactct |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376960 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactggcactagagaaagtctcgacaacgttcatttatttcttaactaataactct |
8376861 |
T |
|
| Q |
490 |
aatacctccaactcttattgaagtacttcaagcaacaggataatacaaattgaaagtttcctttcccacaattgaatacaggcctctaggtgcattcaga |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376860 |
aatacctccaactcttattgaagtacttcaagcaacaggataatacaaattgaaagtttcctttcccacaattgaatacaggcctctaggtgcattcaga |
8376761 |
T |
|
| Q |
590 |
cgttctgctcttgccacgtatactggatcctcctcttattatgccttgcagtccctagcaagatgtcctggctcacgacaacgataacatagatcgctct |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376760 |
cgttctgctcttgccacgtatactggatcctcctcttcttatgccttgcagtccctagcaagatgtcctggctcacgacaacgataacatagatcgctct |
8376661 |
T |
|
| Q |
690 |
ttgcggtacatttgtcagcatagtgtcctggatctccacacttgaaacaataaggctttggcttaaagaggtctcctctgtctcccgcactaggttccaa |
789 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8376660 |
ttgcggaacatttgtcagcatagtgtcctggatctccacacttgaaacaataagcctttggcttaaagaggtctcctctgtctccagcactaggttccaa |
8376561 |
T |
|
| Q |
790 |
tgaattattataatcccctttaggttctctagagtcctcgtagggcttcttcccatttcctcctcgtccacgattttgattgctggaacgagttggt-cc |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8376560 |
tgaattattataatcccctttaggttctctagagtcctcgtagggcttcttcccatttcctcctcgtccacgattttgattgctggaacgagttggtccc |
8376461 |
T |
|
| Q |
889 |
ccacagttattgttatt-cctcgagcaagtctcttattcttcatcgcttctatttctctacacttttctaccaaa-gatggaattgttgaatt-ccaatg |
985 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
8376460 |
ccacagttattgttattccctcgagcaagtctcttattcttcatcgcttctatttctctacacttttctaccaaaggatggaattgttgaattcccaatg |
8376361 |
T |
|
| Q |
986 |
gcattaccatgtct |
999 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8376360 |
gcattaccatgtct |
8376347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 8377343 - 8377027
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8377343 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
8377244 |
T |
|
| Q |
107 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8377243 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
8377144 |
T |
|
| Q |
207 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagnnnnnnnncaaaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8377143 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaat |
8377044 |
T |
|
| Q |
307 |
gatatattatcactcaa |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8377043 |
aatatattatcactcaa |
8377027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 11035898 - 11035963
Alignment:
| Q |
227 |
ataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| |||||||| |
|
|
| T |
11035898 |
ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaag |
11035963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-161; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 22362570 - 22362254
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22362570 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
22362471 |
T |
|
| Q |
107 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22362470 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
22362371 |
T |
|
| Q |
207 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagnnnnnnnncaaaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22362370 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaat |
22362271 |
T |
|
| Q |
307 |
gatatattatcactcaa |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22362270 |
aatatattatcactcaa |
22362254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 119 - 292
Target Start/End: Original strand, 41314684 - 41314857
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41314684 |
cccatttcttgttctatactattggttgatcattatacttaattaaattaatactaacatgagataaagatgagaaaatctacacgtgcacacataaaaa |
41314783 |
T |
|
| Q |
219 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41314784 |
tagtaggaataaatagttatagggtaccccatttaataattaatataatgaattttggctatatactttgaaag |
41314857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 33885956 - 33885841
Alignment:
| Q |
7 |
cactaactcccttcctaaaa-gagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctct |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33885956 |
cactaactcccttcctaaaaagagtggcactatgcttaaggagtgtgaagtgaaattggcc-atgtaactaggaaaggaggttac---attgtttcctct |
33885861 |
T |
|
| Q |
106 |
gtaaatacacgtccccattt |
125 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33885860 |
gtaaatacacgtccccattt |
33885841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 33958296 - 33958411
Alignment:
| Q |
7 |
cactaactcccttcctaaaa-gagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctct |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33958296 |
cactaactcccttcctaaaaagagtggcactatgcttaaggagtgtgaagtgaaattggcc-atgtaactaggaaaggaggttac---attgtttcctct |
33958391 |
T |
|
| Q |
106 |
gtaaatacacgtccccattt |
125 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33958392 |
gtaaatacacgtccccattt |
33958411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 393 - 440
Target Start/End: Complemental strand, 33885471 - 33885424
Alignment:
| Q |
393 |
ggatcttacattctacccacctaaaatagtttcgtcctcgaaactgac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
33885471 |
ggatcttacattctacccacctaaaataatttcgtcctcaaaactgac |
33885424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 33885650 - 33885575
Alignment:
| Q |
217 |
aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||| |||||| || || |||| |||||||||||||| |||||||| |
|
|
| T |
33885650 |
aataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaag |
33885575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 33958602 - 33958677
Alignment:
| Q |
217 |
aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||| |||||| || || |||| |||||||||||||| |||||||| |
|
|
| T |
33958602 |
aataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaag |
33958677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 393 - 440
Target Start/End: Original strand, 33958781 - 33958828
Alignment:
| Q |
393 |
ggatcttacattctacccacctaaaatagtttcgtcctcgaaactgac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
33958781 |
ggatcttacattctacccacctaaaataatttcgtcctcaaaactgac |
33958828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 2e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 119 - 292
Target Start/End: Original strand, 37627819 - 37627992
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37627819 |
cccatttcttgttctatactattggctgatcattatacttaattaaattgatactaacatgagataaagatgaggaattctacacgtgcacacataaaaa |
37627918 |
T |
|
| Q |
219 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37627919 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
37627992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 119 - 292
Target Start/End: Original strand, 37806942 - 37807121
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacac------a |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
37806942 |
cccatttcttgttctatactattggctgatcattatacttaattaaattgatactaacatgagataaagatgaggaattctacacgtgcacacataaaaa |
37807041 |
T |
|
| Q |
213 |
taaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37807042 |
taaaaatagtaggaataaatagttataggttacactatttaataattaatataatgaattttggctatatacttcgaaag |
37807121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 390 - 440
Target Start/End: Original strand, 37807222 - 37807272
Alignment:
| Q |
390 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactgac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37807222 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcaaaactgac |
37807272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 37628097 - 37628142
Alignment:
| Q |
395 |
atcttacattctacccacctaaaatagtttcgtcctcgaaactgac |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37628097 |
atcttacattctacccacctaaaatagtttcgtcctcaaaactgac |
37628142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 2e-85; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 119 - 283
Target Start/End: Original strand, 19633345 - 19633509
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19633345 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagcaattctacacgtgcacacataaaaa |
19633444 |
T |
|
| Q |
219 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatata |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19633445 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatata |
19633509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 119 - 292
Target Start/End: Original strand, 1609254 - 1609431
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1609254 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgaggaattctacacgtgcacacataaaaa |
1609353 |
T |
|
| Q |
219 |
tagtaggaataaa----tagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1609354 |
tagtaggaataaatagttagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
1609431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 119 - 292
Target Start/End: Complemental strand, 2186796 - 2186619
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
2186796 |
cccatttcctgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgaggaattccacacgtgcacacataaaaa |
2186697 |
T |
|
| Q |
219 |
tagtaggaataaata----gttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2186696 |
tagtaggaataaatagttagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
2186619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 48189061 - 48189169
Alignment:
| Q |
15 |
cccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctgtaaataca |
114 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||| |
|
|
| T |
48189061 |
cccttcctaaatgggtggcactatgcttaagaagtggaaagtgaaattgacc-atgtaactaggaaaggaggttac---attgttttct-tttaaataca |
48189155 |
T |
|
| Q |
115 |
cgtccccatttctt |
128 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48189156 |
tgtccccatttctt |
48189169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 21270184 - 21270292
Alignment:
| Q |
15 |
cccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctgtaaataca |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
21270184 |
cccttcctaaatgagtggcactatgcttaagaagtggaaagtgaaactgacc-atgtaactaggaaaggaggttac---cttgttttct-tttaaataca |
21270278 |
T |
|
| Q |
115 |
cgtccccatttctt |
128 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21270279 |
tgtccccatttctt |
21270292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 390 - 440
Target Start/End: Original strand, 19633621 - 19633671
Alignment:
| Q |
390 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactgac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19633621 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcaaaactgac |
19633671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 28386680 - 28386638
Alignment:
| Q |
395 |
atcttacattctacccacctaaaatagtttcgtcctcgaaact |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28386680 |
atcttacattctacccacctaaaatagtttcgtcctcgaaact |
28386638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 21270495 - 21270567
Alignment:
| Q |
217 |
aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
21270495 |
aataataggcataaatagttatagggtacattatttaataat---tgtaatggattttggctatatactttgaaag |
21270567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 48189367 - 48189436
Alignment:
| Q |
217 |
aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
48189367 |
aataataggcataaatagttatagggtacactatttaat------tgtaatagattttggctatatactttgaaag |
48189436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 11993143 - 11993257
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11993143 |
cactaactcccttcctaaaagagtggcactaggcttaaggagtgtgaagtgaaattgacc-atgtaactaggaaaggaggttac---attgttttctctg |
11993238 |
T |
|
| Q |
107 |
taaatacacgtccccattt |
125 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11993239 |
caaatacacgtccccattt |
11993257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 15424814 - 15424763
Alignment:
| Q |
391 |
cgggatcttacattctacccacctaaaatagtttcgtcctcgaaactgacac |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15424814 |
cgggatcttacattctacccacctaaaatagtttcgtcctcgaaactaacac |
15424763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 917 - 999
Target Start/End: Complemental strand, 15421029 - 15420945
Alignment:
| Q |
917 |
tctcttattcttcatcgcttctatttctctacacttttctaccaaa-gatggaattgttgaatt-ccaatggcattaccatgtct |
999 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |||||| | ||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
15421029 |
tctcttattcttcatcgcctctatttctctgcacttttcaaccaaaggctggaattgttgaattcccaaaggcatcaccatgtct |
15420945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 749
Target Start/End: Complemental strand, 15421255 - 15421196
Alignment:
| Q |
690 |
ttgcggtacatttgtcagcatagtgtcctggatctccacacttgaaacaataaggctttg |
749 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
15421255 |
ttgcggtacaattgttagcataatgtcctggatctccacaacggaaacaatagggctttg |
15421196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 3342 - 3397
Alignment:
| Q |
228 |
taaatagttatagggtacactatttaataattaatataatgaattttggctatata |
283 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
3342 |
taaatagttataaggtacactatttaataattagtataatggattttggctatata |
3397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 2964 - 3048
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacatt |
93 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | ||| ||||||||| | | | |||| ||||||||| ||||||||||| |
|
|
| T |
2964 |
cactaactcccttcctaaaagagtgacactatgcttatgaggtgggaagtgaaact-agccatgt-actaggaaaagaggttacatt |
3048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 19215016 - 19214968
Alignment:
| Q |
244 |
acactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
19215016 |
acactatttaataattagtataatgaattttggctatataatttgaaag |
19214968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 6590 - 6637
Alignment:
| Q |
391 |
cgggatcttacattctacccacctaaaatagtttcgtcctcgaaactg |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
6590 |
cgggatcttacattctacccacctaaaatattttcgtcctcaaaactg |
6637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 14002 - 14049
Alignment:
| Q |
391 |
cgggatcttacattctacccacctaaaatagtttcgtcctcgaaactg |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
14002 |
cgggatcttacattctacccacctaaaatattttcgtcctcaaaactg |
14049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 6427 - 6481
Alignment:
| Q |
228 |
taaatagttatagggtacactatttaataattaatataatgaattttggctatata |
283 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| | ||||| |||||||||||||| |
|
|
| T |
6427 |
taaatagttataaggtacactatt-aataattagtgtaatggattttggctatata |
6481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 6682 - 6728
Alignment:
| Q |
393 |
ggatcttacattctacccacctaaaatagtttcgtcctcgaaactga |
439 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
6682 |
ggatgttacattctatccacctaaaatagtttcgccctcaaaactga |
6728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 14094 - 14140
Alignment:
| Q |
393 |
ggatcttacattctacccacctaaaatagtttcgtcctcgaaactga |
439 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
14094 |
ggatgttacattctatccacctaaaatagtttcgccctcaaaactga |
14140 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 407 - 450
Target Start/End: Original strand, 19990271 - 19990314
Alignment:
| Q |
407 |
acccacctaaaatagtttcgtcctcgaaactgacactagagaaa |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19990271 |
acccacctaaaatagtttcgtcctcgaaactgacattagagaaa |
19990314 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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