View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5860-Insertion-3 (Length: 811)
Name: NF5860-Insertion-3
Description: NF5860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5860-Insertion-3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 708; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 11 - 782
Target Start/End: Complemental strand, 40061430 - 40060644
Alignment:
| Q |
11 |
tagtaaaagactgttgagacctaatctagttagtgcctaaaatagtggttgtggcaaaattgtactcaatgcagggaattttccagagaaagattgacaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40061430 |
tagtaaaagactgttgagacctaatctagttagtgcctaaaatagtggttgtggcaaaattgtactcaatgcagggaattttccagagaaagattgacaa |
40061331 |
T |
|
| Q |
111 |
actggatgagttttagttacaaaataaattctatccaaagacgcgaaataagataaacgggcaaaaatttcaatataaaccgcctctacctctaggtttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40061330 |
actggatgagttttagttacaaaataaattctatcctaagacgcgaaataagataaacgggcaaaaatttcaatataaaccgcctctacctctaggtttg |
40061231 |
T |
|
| Q |
211 |
gaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcct |
310 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40061230 |
gaccaagagaagtaatcttaggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcct |
40061131 |
T |
|
| Q |
311 |
aataattcctgcagtatatagcgaatatattaaaaaa--------------cacaattgtccagtgtaatttctcttgtgcatataagaaataaactatg |
396 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40061130 |
aataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatataagaaataaactatg |
40061031 |
T |
|
| Q |
397 |
catgtgatattattaatttatcttcttcgatgtattaccagtggtacattt-gtgatggctacaacatgaacatcatatatttagtatgtaggctgaagg |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
40061030 |
catgtgatattattaatttatcttcttcgatgtattaccggtggtacattttgtgatggctacaacatgaacaacatatatttagtatgtaggctgaagg |
40060931 |
T |
|
| Q |
496 |
acataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgttt |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40060930 |
acataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgttt |
40060831 |
T |
|
| Q |
596 |
ttgagcaggcaataaaaaatgatacagtatcaactaattcctcttaaaaactggccttaagaacaataccatatagtaaattgaacttgtgaagaacatt |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40060830 |
ttgagcaggcaataaaaaatgatacagtatcaactaattcctcttaaaaactggccttaagaacaataccatatagtaaattgaacttgtgaagaacatt |
40060731 |
T |
|
| Q |
696 |
tcaggttgcaataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
782 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40060730 |
tcaggttgcaataccatatagtaattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
40060644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 103 - 641
Target Start/End: Complemental strand, 40087228 - 40086684
Alignment:
| Q |
103 |
attgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagat-----aaacgggcaaaaatttcaatataaaccgcctct |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||| || | |
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|
| T |
40087228 |
attgacaaaccagatgagttttagttacaaaataaattatatcctaagacgcggaataagatgtttcaaacgaacaaaaatttcaatataaaccatctat |
40087129 |
T |
|
| Q |
198 |
acctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgacccc |
297 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
40087128 |
acctctaggtttggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgacccc |
40087029 |
T |
|
| Q |
298 |
acttcggctgcctaataattcctgcagtatatagcgaatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatataagaaataaactatgc |
397 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||||| ||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||| | |
|
|
| T |
40087028 |
acttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttctacatataagaaataaactatcc |
40086929 |
T |
|
| Q |
398 |
atgtgatattattaatttatcttcttcgatgtattaccagtggtacatttgtgatggctacaacatgaacatcatatattt-agtatgtaggctgaagga |
496 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||| |||| | || | ||| ||||||| |
|
|
| T |
40086928 |
atgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaaca--atagatttcaataagaaggttgaagga |
40086831 |
T |
|
| Q |
497 |
--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtt |
594 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40086830 |
gtcataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtt |
40086731 |
T |
|
| Q |
595 |
tttgagcaggcaataaaaaatgatacagtatcaactaattcctctta |
641 |
Q |
| |
|
||| || ||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
40086730 |
tttagtcaagcaatgaaaaatgatacagtatcagctaattcctctta |
40086684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 11 - 782
Target Start/End: Complemental strand, 40079576 - 40078766
Alignment:
| Q |
11 |
tagtaaaagactgttgagacctaatctagttagtgcctaaaatagtggttgtggcaaaattgtactcaatgcagggaattttccagagaaag-------- |
102 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
40079576 |
tagtaaaagactgttaagaactaatctagttagtgccgaaaatagtggctgtggaaaaattgcactcaatggagggaattttccagagaaagtaacttac |
40079477 |
T |
|
| Q |
103 |
---attgacaaactggatgagttttagttacaa------aataaattctatccaaagacgcgaaataagata-----aacgggcaaaaatttcaatataa |
188 |
Q |
| |
|
||||||||||| || || |||||||||||| | | |||||||| |||||| | | |||||| ||| | |||||||||||||| | |
|
|
| T |
40079476 |
aagattgacaaactagaagaattttagttacaatgatccagatatttctatcctaagacgtggagtaagatgtttcgaacagacaaaaatttcaatacat |
40079377 |
T |
|
| Q |
189 |
accgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaa |
288 |
Q |
| |
|
||| ||| ||||||||||||| |||||||||| | ||||||||| || |||||||||| ||||| ||||||||||||| ||||||||| | |||||||| |
|
|
| T |
40079376 |
accacctatacctctaggttttgaccaagagatgaaatcttgggatcagtagctattagtgcttcttcacaaagctttatggccttgtgtacatctttaa |
40079277 |
T |
|
| Q |
289 |
gatgaccccacttcggctgcctaataattcctgcagtatatagcgaatatattaaaaa-acaca----attgtccagtgtaatttctcttgtgcatataa |
383 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| | |||||||| | ||||| |||||||||||||||||||||| | ||| || |
|
|
| T |
40079276 |
gatgaccccacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaatttctcttctaaataaaa |
40079177 |
T |
|
| Q |
384 |
gaaataaactatgcatgtgatattattaatttatcttcttcgatg-------tattaccagtggtacatttgtgatggctacaacatgaacatcatatat |
476 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
40079176 |
gaaaataactatgcgtgtaatattattaatttatcttcttcgaggaccgaggtattaccagtggtgcatttgcgatggctacaacatgaacaaaatatac |
40079077 |
T |
|
| Q |
477 |
ttagtatgtaggctgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagtt |
574 |
Q |
| |
|
| |||| ||| |||| || ||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40079076 |
tc-gtattaaggttgaaagagtcataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccggtacttcggtcaaagtt |
40078978 |
T |
|
| Q |
575 |
ggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctctta-----aaaactggccttaag-aacaataccata |
668 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| ||||| | ||||||||||||| || | | | ||| || | || |||| |
|
|
| T |
40078977 |
ggttcctccatggtactgtttttgggcaagcaataaaaaatgataaagtattagctaattcctcttagagccaatttttccgtgaagtaatactatcata |
40078878 |
T |
|
| Q |
669 |
tagtaaattgaacttgtgaagaacatttcaggttgcaataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaa |
768 |
Q |
| |
|
|| |||||||||||| ||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40078877 |
ta--aaattgaacttgcgaacaacatttcaggttgcaataccatatagtagttttgaaatgttccaccacgttggaaaaagcgtgccacagcaaatgcaa |
40078780 |
T |
|
| Q |
769 |
gatcttccacaggt |
782 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40078779 |
gatcttccacaggt |
40078766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 677 - 782
Target Start/End: Complemental strand, 40086644 - 40086539
Alignment:
| Q |
677 |
tgaacttgtgaagaacatttcaggttgcaataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttcc |
776 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
40086644 |
tgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaatgttccacctcgttggaaaaagcgtgcgacagcaaatgcgagatcttcc |
40086545 |
T |
|
| Q |
777 |
acaggt |
782 |
Q |
| |
|
|||||| |
|
|
| T |
40086544 |
acaggt |
40086539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 22014230 - 22014313
Alignment:
| Q |
240 |
gctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgca |
323 |
Q |
| |
|
||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||| ||||||| |
|
|
| T |
22014230 |
gctatcaatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 607
Target Start/End: Original strand, 22014420 - 22014530
Alignment:
| Q |
497 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttt |
596 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| ||||| || | |||||| ||||| || || |||| ||||||| || ||||||||||||| |||| |
|
|
| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
|
| Q |
597 |
tgagcaggcaa |
607 |
Q |
| |
|
||||| |||| |
|
|
| T |
22014520 |
agagcaagcaa |
22014530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 707 - 778
Target Start/End: Original strand, 22014765 - 22014836
Alignment:
| Q |
707 |
taccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccac |
778 |
Q |
| |
|
|||||| || ||||||||||| |||||||| || || |||||||| || || ||||| |||||||||||||| |
|
|
| T |
22014765 |
taccatgtagtaattttgaaaagttccaccccgctgaaaaaagcgcgcaacggcaaaagcaagatcttccac |
22014836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 706 - 782
Target Start/End: Complemental strand, 35257931 - 35257855
Alignment:
| Q |
706 |
ataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
782 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||||| || || |||||||||||||| ||||| |||||| |
|
|
| T |
35257931 |
ataccatataataattttgaagacttcctccacgctggaaaaaacgcgcaacagcaaatgcaaggtcttcaacaggt |
35257855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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