View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5860-Insertion-4 (Length: 770)
Name: NF5860-Insertion-4
Description: NF5860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5860-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 9 - 770
Target Start/End: Original strand, 36753003 - 36753770
Alignment:
| Q |
9 |
aatcaattatcatccttcttcttcgctcagtaaacctctcaaatgggaagataaagatgctaaaccggacgcagcgtcaaattctacggaatctccttct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36753003 |
aatcaattatcatccttcttcttcgctcagtaaacctctcaaatgggaagataaagatgctaaatcggacgcagcgtcaaattctacggaatctccttct |
36753102 |
T |
|
| Q |
109 |
ctggtgcctgccattgaagctaagagaatctgcagtgtctgcatggcttgctttgcctgtgataagaataataggacgttgtgtgcgaggtgtttcattc |
208 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36753103 |
ctggtgcctgccaatgaagctaagagaatctgcagtgtctgcatggattgctttgcctgtgataagaataataggaagttgtgtgcgaggtgtttcattc |
36753202 |
T |
|
| Q |
209 |
gtgggaactatcgaattggcatgagtaatacaaaatttaagagagtggagataagtgaggagaccaaaaatgaatggactgaggaggaaacactgaatct |
308 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36753203 |
gtgggaactatcgaattggtatgagtaatacaaaatttaagagagtggagataagtgaggagacaaaaaatgaatggactgaggaggaaacactgaatct |
36753302 |
T |
|
| Q |
309 |
tcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtaggaccgacaaggaatgtgttgctcgttttctagagctt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753303 |
tcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtaggaccgacaaggaatgtgttgctcgttttctagagctt |
36753402 |
T |
|
| Q |
409 |
ccttttggcgatcagttgaagcctcccgttgatgctgaatgggaatccgaaattgttgggtcgggtaaatctagtaagagaatgtgtctcacacctctta |
508 |
Q |
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| T |
36753403 |
ccttttggcgatcagttgaagcctcccgttgatgctgaatgggaatccgaaattgttgggtcgggtaaatctagtaagagaatgtgtctcacacctctta |
36753502 |
T |
|
| Q |
509 |
atgatgctagcaatcctatcatggctcaggctgctttcctttctgctttggcagggacggaggttgcacaagctgcagctcaagctgctctgacaagttt |
608 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753503 |
atgatgctatcaatcctatcatggctcaggctgctttcctttctgctttggcagggacggaggttgcacaagctgcagctcaagctgctctgacaagttt |
36753602 |
T |
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| Q |
609 |
gtccaatgtttacaaatcaactagaatccattaccggtcatttccaaggaatacattgc------atgcttcttttgcatccgatggtggtaatgcttca |
702 |
Q |
| |
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| T |
36753603 |
gtccattgtttacaaatcaactagaattaattaccggtcatttccaaggaatacattgcagcaagatgcttctgttgcatccgatggtggtaatgcttca |
36753702 |
T |
|
| Q |
703 |
gattctattcaaggatctctattgcgtgcaaatttacagcttgagaaggaagaatcagacgtggaaaa |
770 |
Q |
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| T |
36753703 |
gattctatccaaggatctctattgcgtgcaaatttacagcttgagaaggaagaatcagacgtggaaaa |
36753770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 79 - 460
Target Start/End: Original strand, 19123407 - 19123788
Alignment:
| Q |
79 |
gcagcgtcaaattctacggaatctccttctctggtgcctgccattgaagctaagagaatctgcagtgtctgcatggcttgctttgcctgtgataagaata |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||| ||| ||||||||||||| |
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| T |
19123407 |
gcagcgtcaaattctacggaatctccttctctggtgcctgccaatgaagctaagagaatctgaagtggctgcatggctagctctgcatgtgataagaata |
19123506 |
T |
|
| Q |
179 |
ataggacgttgtgtgcgaggtgtttcattcgtgggaactatcgaattggcatgagtaatacaaaatttaagagagtggagataagtgaggagaccaaaaa |
278 |
Q |
| |
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||| ||||||||||| ||||||||| ||| |||| |||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||| ||||| |
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| T |
19123507 |
atatgacgttgtgtgtgaggtgttttatttgtggaaactatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacaaaaaa |
19123606 |
T |
|
| Q |
279 |
tgaatggactgaggaggaaacactgaatcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtaggaccgac |
378 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123607 |
agaatggactgaggaggaaacactgaatcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtaggaccgac |
19123706 |
T |
|
| Q |
379 |
aaggaatgtgttgctcgttttctagagcttccttttggcgatcagttgaagcctcccgttgatgctgaatgggaatccgaaa |
460 |
Q |
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| T |
19123707 |
aaggaatgtgttgctcgttttctagagcttccttttggcgatcagttaaagcctcccgttgatgctgaatgtgaatccgaaa |
19123788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 638 - 770
Target Start/End: Original strand, 19123835 - 19123973
Alignment:
| Q |
638 |
attaccggtcatttccaaggaatacattgca------tgcttcttttgcatccgatggtggtaatgcttcagattctattcaaggatctctattgcgtgc |
731 |
Q |
| |
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||||||| ||||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
19123835 |
attaccgatcatttctaaggaatacattgcagcaagatgcttcagttacatccgatggtggtaatgcttcagattctatccaaggatctctattggatgc |
19123934 |
T |
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| Q |
732 |
aaatttacagcttgagaaggaagaatcagacgtggaaaa |
770 |
Q |
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| T |
19123935 |
aaatttacagcttgagaaggaagaatcagatgtggaaaa |
19123973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 19123367 - 19123400
Alignment:
| Q |
9 |
aatcaattatcatccttcttcttcgctcagtaaa |
42 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
19123367 |
aatcaattatcatccttcttcttctctcagtaaa |
19123400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 173 - 425
Target Start/End: Complemental strand, 54293133 - 54292881
Alignment:
| Q |
173 |
agaataataggacgttgtgtgcgaggtgtttcattcgtgggaactatcgaattggcatgagtaatacaaaatttaagagagtggagataagtgaggagac |
272 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||| |
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| T |
54293133 |
agaataatatgacgttgtgtgcgaggtgttttattcgtggaaattatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagac |
54293034 |
T |
|
| Q |
273 |
caaaaatgaatggactgaggaggaaacactgaatcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtagg |
372 |
Q |
| |
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| T |
54293033 |
gaaaaatgaatggactgagaaggaaacactgaatcttcttgaagctattacgaatttcggtgatgattggaagagggttgctcatcaagttgttggtagg |
54292934 |
T |
|
| Q |
373 |
accgacaaggaatgtgttgctcgttttctagagcttccttttggcgatcagtt |
425 |
Q |
| |
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| T |
54292933 |
accgacaaggaatgcgttgctcgttttttagagcttccttttggtgatcagtt |
54292881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 535 - 668
Target Start/End: Complemental strand, 54292407 - 54292274
Alignment:
| Q |
535 |
caggctgctttcctttctgctttggcagggacggaggttgcacaagctgcagctcaagctgctctgacaagtttgtccaatgtttacaaatcaactagaa |
634 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54292407 |
caggctgctttcctttctgctttggcagggacggaggttgcgcaagctgcagctcaagctgctctgacaagtttgtccaatgtttacaaatcaactagaa |
54292308 |
T |
|
| Q |
635 |
tccattaccggtcatttccaaggaatacattgca |
668 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |
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| T |
54292307 |
ttaattaccggtcatttccaaggaatacattgca |
54292274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 418 - 538
Target Start/End: Complemental strand, 54292831 - 54292711
Alignment:
| Q |
418 |
gatcagttgaagcctcccgttgatgctgaatgggaatccgaaattgttgggtcgggtaaatctagtaagagaatgtgtctcacacctcttaatgatgcta |
517 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54292831 |
gatcagttgaagcctcccgttgctgctgaatgtgaatccgaaactgttccgtcggataaatctagtaagagaatgtgtctcacacctcttgcggatgcta |
54292732 |
T |
|
| Q |
518 |
gcaatcctatcatggctcagg |
538 |
Q |
| |
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||||||||||||||||||||| |
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| T |
54292731 |
gcaatcctatcatggctcagg |
54292711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 668 - 770
Target Start/End: Complemental strand, 54292076 - 54291974
Alignment:
| Q |
668 |
atgcttcttttgcatccgatggtggtaatgcttcagattctattcaaggatctctattgcgtgcaaatttacagcttgagaaggaagaatcagacgtgga |
767 |
Q |
| |
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||||| || |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54292076 |
atgctgctgttgcatccaatggtggtaatgcttcagattctatccaaggatctttattgcgtgcaaatttacagcttgagaaggaagaatcagacgtgga |
54291977 |
T |
|
| Q |
768 |
aaa |
770 |
Q |
| |
|
||| |
|
|
| T |
54291976 |
aaa |
54291974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 54293653 - 54293511
Alignment:
| Q |
9 |
aatcaattatcatccttcttcttcgctcagtaaacctctcaaatgggaagataaagatgctaaaccggacgcagcgtcaaattctacggaatctccttct |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| || ||||| | |||||||||||| |
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| T |
54293653 |
aatcaattatcatccttcttcttcgctcagtaaacctctcaaatgggaagataaagacaccaaacccgacgcagcatcgaattccgcagaatctccttct |
54293554 |
T |
|
| Q |
109 |
ctggtgcctgccattgaagctaagagaatctgcagtgtctgca |
151 |
Q |
| |
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| || |||| || ||||||||||||||||| |||| ||||| |
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| T |
54293553 |
ccggcacctgtcaaagaagctaagagaatctgtagtggctgca |
54293511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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