View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5860-Insertion-5 (Length: 720)
Name: NF5860-Insertion-5
Description: NF5860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5860-Insertion-5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 657; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 9 - 720
Target Start/End: Original strand, 36839977 - 36840688
Alignment:
| Q |
9 |
cacgcgaatgaggttctctctttccaaggcagtaaaaattgagataatcttgtggatgataacattcagagagacctgcttttgcaagtgcatctgcaac |
108 |
Q |
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| T |
36839977 |
cacgcgaatgaggttctctctttccaaggcagtaaaaattgagataatcttgtggatgataacattcagagagacctgcttttgcaagtgcatctgcaac |
36840076 |
T |
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| Q |
109 |
aatcttatacatcatagacattgtttgtccctgccagaacaagatttcttgaacagcagcactagttggaactccttctggccacattggtatgactata |
208 |
Q |
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| T |
36840077 |
aatcttatacatcatagacattgtttgtccctgccagaacaagatttcttgaacagcagcactagttggaactccttctggccacattggtatgactata |
36840176 |
T |
|
| Q |
209 |
tacacagaaaatcgttcatgtgcgcttatcttgcttgcagtttttaatgccaactccattggaatcaagtgatttgcacctattgaagataagatatcnn |
308 |
Q |
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| T |
36840177 |
tacacagaaaatcgttcatgtgcgattatcttgcttgcaatttttaatgccaactccattggaatcaagtgatttgcacctattgaagataagatatcaa |
36840276 |
T |
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| Q |
309 |
nnnnnnnnnnnctcccatgtctaggtgcttattataagccctaaaaacatattgtaaactttttatagatgcatttatactgtaacaatgttaaacttta |
408 |
Q |
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| T |
36840277 |
aaaataaaaaactcccatgtctaggtgcttattataagccctaaaaacatattgtaaactttttatagatgcatttatactgtaacaatgttaaacttta |
36840376 |
T |
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| Q |
409 |
tccacctgcatttctatacgtaggccaatgatatgaggagcctagaaaatactgattctcaatatagacgaagcgctgagccgatcttattgcttttacc |
508 |
Q |
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| T |
36840377 |
tccacctgcatttctatacgtaggccaatgatatgaggagcctagaaaatactgattctcaatataaacgaagcgctgagccgatcttattgcttttaca |
36840476 |
T |
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| Q |
509 |
taagcagcatggatgctttggtcaacttttaagttttttccacataaaagattctgcagaaagttgataataataagagaagttaaacataaagactaat |
608 |
Q |
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| T |
36840477 |
taagcagcatggatgctttggtcaacttttaagttttttccacataaaagattctgcagaaagttgataataataagagaagttaaacataaagactaat |
36840576 |
T |
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| Q |
609 |
tgaattcagtagaaaactagaaatcacaccacaatgcaaattaagttgatgaaaataatgaagcacttaaggcataagtggacatcacgtacaatcttgt |
708 |
Q |
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| T |
36840577 |
tgaattcagtagaaaactagaaatcacaccacaatgcaaattaagttgatgaaaataatgaagcacttaaggcataagtggacatcacgtacaatcttgt |
36840676 |
T |
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| Q |
709 |
tctcacctgagc |
720 |
Q |
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|||||||||||| |
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| T |
36840677 |
tctcacctgagc |
36840688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 517 - 584
Target Start/End: Original strand, 36829282 - 36829349
Alignment:
| Q |
517 |
atggatgctttggtcaacttttaagttttttccacataaaagattctgcagaaagttgataataataa |
584 |
Q |
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| T |
36829282 |
atggatgctttggtcaacttttaagtatttttcatataaaagattcagcagaaagttgatattaataa |
36829349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 5401513 - 5401479
Alignment:
| Q |
179 |
actccttctggccacattggtatgactatatacac |
213 |
Q |
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| T |
5401513 |
actccttctggccacattggtataactatatacac |
5401479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 43052328 - 43052362
Alignment:
| Q |
179 |
actccttctggccacattggtatgactatatacac |
213 |
Q |
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| T |
43052328 |
actccttctggccacattggtataactatatacac |
43052362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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