View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5860_low_1 (Length: 506)
Name: NF5860_low_1
Description: NF5860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5860_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 113 - 462
Target Start/End: Original strand, 11729074 - 11729422
Alignment:
| Q |
113 |
tgaattgcctcccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcagg |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||||| ||||| |
|
|
| T |
11729074 |
tgaattccctcccaatattctaaaacttggacagcaagtaattg---gtagtcttgtccaatttaaaagacttaatgagaacttcactagctatttcagg |
11729170 |
T |
|
| Q |
213 |
tgtagccccaaacactgcattgccaatagttatagctcctggattctggctactaagagcagcgatcgcaataacattgtcatgt--ccgatatttcttt |
310 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| ||||||| | || |||||||||| |
|
|
| T |
11729171 |
tgcagccccaaacactgcattgccaatagttatagctcctggattctgactactaagagcagcaatggcaacaacgttgtcatatatccaatatttcttt |
11729270 |
T |
|
| Q |
311 |
gatagtgaatgagccctataggaaacacaaacacatctcccttttgtagaactttcctaaaatggcggttttccggatttgaagtgatgaatccaacttc |
410 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
11729271 |
gatagtgaatgagctctataggaaacacaaacacatctcccttttgtagaactttcctagagtgccggttttctggatttgaagtgatgaatccaacttc |
11729370 |
T |
|
| Q |
411 |
caatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtga |
462 |
Q |
| |
|
||||| |||||||||||| || |||||||| || |||||||||||||||||| |
|
|
| T |
11729371 |
caatgtgccttcaagaacagtgaatatttccgtagcacgaggatgtgagtga |
11729422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 120 - 462
Target Start/End: Original strand, 11719966 - 11720308
Alignment:
| Q |
120 |
cctcccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcaggtgtagcc |
219 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||| ||| | ||||||||| || ||||| |||||||||||| |
|
|
| T |
11719966 |
cctcccaatattctaaaactttgactgtaagtaattgatggcattcttgtccaatttaaaagccttgatgagcacttcacttgctatttcaggtgtagcc |
11720065 |
T |
|
| Q |
220 |
ccaaacactgcattgccaatagttatagctcctggattctggctactaagagcagcgatcgcaataacattgtcatgtccgatatttctttgatagtgaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||| || ||| ||||||||||||||||||| |
|
|
| T |
11720066 |
ccaaacactgcattgccaatagttatagctcctggattctgactactaagagcagcaatagcaacaacattacaatttccaatatttctttgatagtgaa |
11720165 |
T |
|
| Q |
320 |
tgagccctataggaaacacaaacacatctcccttttgtagaactttcctaaaatggcggttttccggatttgaagtgatgaatccaacttccaatgcgcc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||||||||||||| || | ||| |
|
|
| T |
11720166 |
tgagccctataggaaacacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgacgtgatgaatccaacttctaacgtgcc |
11720265 |
T |
|
| Q |
420 |
ttcaagaactgttaatatttcagtggcacgaggatgtgagtga |
462 |
Q |
| |
|
||| ||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
11720266 |
ttcgagaacagtgaatatttcagtggcacggggatgtgagtga |
11720308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 129 - 462
Target Start/End: Original strand, 11671845 - 11672178
Alignment:
| Q |
129 |
attctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcaggtgtagccccaaacact |
228 |
Q |
| |
|
|||||||||||| |||||||| || ||||||| | |||| |||| | ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
11671845 |
attctaaaacttagactgcaaatagttgatggcattcttctccagctgaaaagccttaataagcacttcactagctatttcaggtgtagcaccaaacact |
11671944 |
T |
|
| Q |
229 |
gcattgccaatagttatagctcctggattctggctactaagagcagcgatcgcaataacattgtcatgtccgatatttctttgatagtgaatgagcccta |
328 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11671945 |
gcattgccaatagtgatagctcccggattctggctactaagagcagcgattgcaataacattgtcatgtccgatatttctttgatagtgaatgagcccta |
11672044 |
T |
|
| Q |
329 |
taggaaacacaaacacatctcccttttgtagaactttcctaaaatggcggttttccggatttgaagtgatgaatccaacttccaatgcgccttcaagaac |
428 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| || | |||||| ||||| |
|
|
| T |
11672045 |
taggaaacacaaacacatctcccttatgtagaactttactaaagtggcggttttctggatttgaagtgatgaatccaacttctaacgtgccttcgagaac |
11672144 |
T |
|
| Q |
429 |
tgttaatatttcagtggcacgaggatgtgagtga |
462 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||| |
|
|
| T |
11672145 |
agtgaatatttcagtagcgcgaggatgtgagtga |
11672178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 111 - 462
Target Start/End: Original strand, 11680714 - 11681068
Alignment:
| Q |
111 |
gttgaattgcctcccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtca |
210 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||||||||||||||||||| | |||||||||||| ||||| | ||| ||| |||||||||||||| ||| |
|
|
| T |
11680714 |
gttgaattccctcccaatattttaaaacttcgactgcaagtaattgatggcattcttgtccaattgaaaagccataatgagaacttcgctagctatttca |
11680813 |
T |
|
| Q |
211 |
ggtgtagccccaaacactgcattgccaatagttatagctcctggattctggctactaagagcagcgatcgcaataacattgtcatgtccgatatttcttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| | ||| |||||||||| |
|
|
| T |
11680814 |
ggtgtagccccaaacactgcattgccaatagttatagctcctggattctggctactaagagcagcaatggcaacaacattgttgtatccaatatttcttt |
11680913 |
T |
|
| Q |
311 |
gatagtgaatgagccctatag---gaaacacaaacacatctcccttttgtagaactttcctaaaatggcggttttccggatttgaagtgatgaatccaac |
407 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| | ||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
11680914 |
gatagtgaatgagacctataggaagaaacacaaacacatctcccttatgtagaactttacaaaagtggcggttttctgggtttgaagtgatgaatccaac |
11681013 |
T |
|
| Q |
408 |
ttccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtga |
462 |
Q |
| |
|
||| |||| ||||||||||| || ||||||| || |||||||||||||||||| |
|
|
| T |
11681014 |
ttctaatgttccttcaagaacagtgcatatttcggtagcacgaggatgtgagtga |
11681068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 113 - 462
Target Start/End: Complemental strand, 11694023 - 11693671
Alignment:
| Q |
113 |
tgaattgcctcccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcagg |
212 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||| ||||| ||| |||||||||||||| ||||| |
|
|
| T |
11694023 |
tgaattccttcccaatattctaaaacttcgactgcaagtaattgatggcattcttgtccaattgaaaagccttaatgagaacttcgctagctatttcagg |
11693924 |
T |
|
| Q |
213 |
tgtagccccaaacactgcattgccaatagttatagctcctggattctggctactaagagcagcgatcgcaataacattgtcatgtccgatatttctttga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |||| |||||||| | ||| |||||||||||| |
|
|
| T |
11693923 |
tgtagccccaaacactgcattgccaatagttatagctcctggattcttgctagtaagagcagcaatggcaacaacattgttgtatccaatatttctttga |
11693824 |
T |
|
| Q |
313 |
tagtgaatgagccctatag---gaaacacaaacacatctcccttttgtagaactttcctaaaatggcggttttccggatttgaagtgatgaatccaactt |
409 |
Q |
| |
|
|||||||| || ||||||| |||||||||||||||||||||| ||||||||||| | ||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
11693823 |
tagtgaataagacctataggtagaaacacaaacacatctcccttatgtagaactttacaaaagtggcggttttctgggtttgaagtgatgaatccaactt |
11693724 |
T |
|
| Q |
410 |
ccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtga |
462 |
Q |
| |
|
| |||| ||||||||||| || ||||||| || |||||||||||||||||| |
|
|
| T |
11693723 |
ctaatgttccttcaagaacagtgcatatttcggtagcacgaggatgtgagtga |
11693671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 213 - 462
Target Start/End: Complemental strand, 11712959 - 11712703
Alignment:
| Q |
213 |
tgtagccccaaacactgcattgccaatagttatagctcctggattctggctactaagagcagcgatcgcaat--------aacattgtcatgtccgatat |
304 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||| |||||||| | ||| |||| |
|
|
| T |
11712959 |
tgtagccccaaacacttcattgccaatagtgatagctcctggattctggctactaagagcagcaatggcaagttggcaacaacattgttgtatccaatat |
11712860 |
T |
|
| Q |
305 |
ttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagaactttcctaaaatggcggttttccggatttgaagtgatgaatcc |
404 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||| | ||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
11712859 |
ttctttgatagtgaatgagacctatag-aaacacaaacacatctctcttatgtagaactttacgaaagtggcggttttctgggtttgaagtgatgaatcc |
11712761 |
T |
|
| Q |
405 |
aacttccaatgcgccttcaagaactgttaatatttcagtggcacgaggatgtgagtga |
462 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
11712760 |
aacttctaatgttccttcaagaacagttaatatttcagtagcacgaggatgtgagtga |
11712703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 11680622 - 11680669
Alignment:
| Q |
17 |
tacacacttctaggaaagaatcaaatggatgatactaaagtatcatag |
64 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
11680622 |
tacacacttataggaatgaatcaaatggatgatactaaagtaccatag |
11680669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 123 - 462
Target Start/End: Original strand, 7661936 - 7662275
Alignment:
| Q |
123 |
cccaatattctaaaacttggactgcaagtaattgatggtagtcttgtccaatttaaaagacttaacgagcacttcgctagctatgtcaggtgtagcccca |
222 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||||| || ||||| |||||||| ||||||||||||||| |
|
|
| T |
7661936 |
cccaataatctaaaactttgactgcaagtaattgataatagtcttgtccaattgaaaagccttaacaagaacttcactagctatctcaggtgtagcccca |
7662035 |
T |
|
| Q |
223 |
aacactgcattgccaatagttatagctcctggattctggctactaagagcagcgatcgcaataacattgtcatgtccgatatttctttgatagtgaatga |
322 |
Q |
| |
|
|||| |||||| |||||||| ||| ||||||||||||||||||||||||| || || |||| ||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
7662036 |
aacattgcattaccaatagtgatacctcctggattctggctactaagagctgcaatggcaacaacatgagcatttcctatatttctttgatagtgaatga |
7662135 |
T |
|
| Q |
323 |
gccctataggaaacacaaacacatctcccttttgtagaactttcctaaaatggcggttttccggatttgaagtgatgaatccaacttccaatgcgccttc |
422 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || | |||||| |
|
|
| T |
7662136 |
gtcctataggaaacacaaacacatctcccttttgtagaacttttctaaagtggcggttttccgggtttgaagtgatgaatccaacttctaaagtgccttc |
7662235 |
T |
|
| Q |
423 |
aagaactgttaatatttcagtggcacgaggatgtgagtga |
462 |
Q |
| |
|
|||||| || |||||||| || |||||||||||||||||| |
|
|
| T |
7662236 |
aagaacagtgaatatttcggtagcacgaggatgtgagtga |
7662275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University