View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5861-Insertion-11 (Length: 130)

Name: NF5861-Insertion-11
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5861-Insertion-11
NF5861-Insertion-11
[»] chr2 (1 HSPs)
chr2 (9-114)||(8323551-8323656)
[»] chr1 (3 HSPs)
chr1 (28-106)||(14650973-14651051)
chr1 (28-106)||(14660764-14660842)
chr1 (70-114)||(27643384-27643428)
[»] chr6 (2 HSPs)
chr6 (9-114)||(21729846-21729951)
chr6 (9-114)||(14453415-14453524)
[»] chr3 (3 HSPs)
chr3 (9-112)||(51140187-51140293)
chr3 (42-112)||(40927394-40927464)
chr3 (68-114)||(38475631-38475677)
[»] chr5 (1 HSPs)
chr5 (19-114)||(14274826-14274924)
[»] chr7 (4 HSPs)
chr7 (65-113)||(34762704-34762752)
chr7 (65-113)||(34764095-34764143)
chr7 (71-114)||(27745745-27745788)
chr7 (70-113)||(43970064-43970107)
[»] chr4 (2 HSPs)
chr4 (42-114)||(5185495-5185567)
chr4 (70-114)||(38761399-38761443)
[»] scaffold0839 (1 HSPs)
scaffold0839 (65-113)||(4651-4699)
[»] scaffold0010 (1 HSPs)
scaffold0010 (65-113)||(236671-236719)
[»] chr8 (1 HSPs)
chr8 (70-114)||(16484169-16484213)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 9e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 8323656 - 8323551
Alignment:
Q  9 gctagttcattgtaggggtctcttggttactttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatcc 108  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||| ||||||||||||||| |||||||||||    
T  8323656 gctagttcagtgtaggggtctcttggttactttcgactttgtagtatcgttcattcgaagacaaacaaataaagttgcacatagcataactagagcatcc 8323557  T
Q  109 ttatct 114  Q
    ||||||    
T  8323556 ttatct 8323551  T

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Target: chr1 (Bit Score: 59; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 14650973 - 14651051
Alignment:
Q  28 ctcttggttactttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcat 106  Q
    ||||||| ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  14650973 ctcttggctactttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat 14651051  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 14660764 - 14660842
Alignment:
Q  28 ctcttggttactttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcat 106  Q
    ||||||| ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  14660764 ctcttggctactttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat 14660842  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 27643428 - 27643384
Alignment:
Q  70 caagcaaataaggttgcacatagcatagctagagcatccttatct 114  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||||    
T  27643428 caagctaataaggttgctcatagtattgctagagcatccttatct 27643384  T

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Target: chr6 (Bit Score: 58; Significance: 8e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 21729951 - 21729846
Alignment:
Q  9 gctagttcattgtaggggtctcttggttactttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatcc 108  Q
    |||||||||  ||||||| ||||||  ||||||||||||| |||| ||||||||| |||| ||| ||||||||||||||||||||||||||| | |||||    
T  21729951 gctagttcagagtaggggcctcttgtctactttcgactttgtagtgtcgttcattcggaggcaaccaaataaggttgcacatagcatagctacaacatcc 21729852  T
Q  109 ttatct 114  Q
    ||||||    
T  21729851 ttatct 21729846  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 14453524 - 14453415
Alignment:
Q  9 gctagttcattgtaggggtctcttggttactttcgactttatagtatcgttcatttggagacaagcaaataaggttgcac----atagcatagctagagc 104  Q
    ||||||||| |||||||  ||||||| ||||||||||||| |||| | ||||||| |||| |||||||||||||||||||    |||| |||||||||||    
T  14453524 gctagttcagtgtagggccctcttggctactttcgactttgtagtgttgttcattcggaggcaagcaaataaggttgcacatatatagtatagctagagc 14453425  T
Q  105 atccttatct 114  Q
    ||||||||||    
T  14453424 atccttatct 14453415  T

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Target: chr3 (Bit Score: 53; Significance: 8e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 51140293 - 51140187
Alignment:
Q  9 gctagttcattgtaggggtctcttggttact---ttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagca 105  Q
    ||||||||| |||||||||||||||| |||    |||||||||||||| ||||| ||| |||  ||||| |||| |||||||||||||||||||||||||    
T  51140293 gctagttcagtgtaggggtctcttggctaccaacttcgactttatagtgtcgtttattcggaagcaagcgaatagggttgcacatagcatagctagagca 51140194  T
Q  106 tccttat 112  Q
    |||||||    
T  51140193 tccttat 51140187  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 40927464 - 40927394
Alignment:
Q  42 cgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatccttat 112  Q
    ||||||| |||| ||||| ||| | || |||||||||| ||||||| |||||||| |||||||||||||||    
T  40927464 cgactttgtagtgtcgtttattcgaaggcaagcaaatagggttgcatatagcataactagagcatccttat 40927394  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 38475631 - 38475677
Alignment:
Q  68 gacaagcaaataaggttgcacatagcatagctagagcatccttatct 114  Q
    ||||| ||||||| ||||||||||| ||| |||||||||||||||||    
T  38475631 gacaaacaaataaagttgcacatagtataactagagcatccttatct 38475677  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 14274924 - 14274826
Alignment:
Q  19 tgtaggggtctcttggttac---tttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatccttatct 114  Q
    ||||||||||||||||  ||   |||||||||| |||| ||||||||| | |  ||||||||||  ||||||||||| |||| ||||||||||||||||    
T  14274924 tgtaggggtctcttggcaaccaatttcgactttgtagtgtcgttcattcgaaagcaagcaaatagagttgcacataggatagttagagcatccttatct 14274826  T

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Target: chr7 (Bit Score: 33; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 34762752 - 34762704
Alignment:
Q  65 ggagacaagcaaataaggttgcacatagcatagctagagcatccttatc 113  Q
    ||||||||||||||||||| || |||| |||||||||||| ||||||||    
T  34762752 ggagacaagcaaataaggtagctcataacatagctagagcttccttatc 34762704  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 34764095 - 34764143
Alignment:
Q  65 ggagacaagcaaataaggttgcacatagcatagctagagcatccttatc 113  Q
    |||| |||||||||||||| || |||| |||||||||||| ||||||||    
T  34764095 ggagtcaagcaaataaggtagctcataacatagctagagcttccttatc 34764143  T

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Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 27745788 - 27745745
Alignment:
Q  71 aagcaaataaggttgcacatagcatagctagagcatccttatct 114  Q
    |||| ||||||||||| ||||| || ||||||||||||||||||    
T  27745788 aagctaataaggttgctcatagtatcgctagagcatccttatct 27745745  T

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Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 43970064 - 43970107
Alignment:
Q  70 caagcaaataaggttgcacatagcatagctagagcatccttatc 113  Q
    ||||||||||||||||| ||||| || |||||||| ||||||||    
T  43970064 caagcaaataaggttgctcatagtattgctagagcgtccttatc 43970107  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 5185567 - 5185495
Alignment:
Q  42 cgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatccttatct 114  Q
    |||||||| ||| ||||  ||| |||||||||| |||| |||||| ||||| ||||||||||| |||||||||    
T  5185567 cgactttaaagtgtcgtatattaggagacaagctaatagggttgctcatagtatagctagagcttccttatct 5185495  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 38761443 - 38761399
Alignment:
Q  70 caagcaaataaggttgcacatagcatagctagagcatccttatct 114  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||||    
T  38761443 caagctaataaggttgctcatagtattgctagagcatccttatct 38761399  T

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Target: scaffold0839 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 4699 - 4651
Alignment:
Q  65 ggagacaagcaaataaggttgcacatagcatagctagagcatccttatc 113  Q
    ||||||||||||||||| | || |||| |||||||||||| ||||||||    
T  4699 ggagacaagcaaataagttagctcataacatagctagagcttccttatc 4651  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 236719 - 236671
Alignment:
Q  65 ggagacaagcaaataaggttgcacatagcatagctagagcatccttatc 113  Q
    |||| |||||||||||||| || |||| |||||||||||| ||||||||    
T  236719 ggaggcaagcaaataaggtagctcataacatagctagagcttccttatc 236671  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 16484213 - 16484169
Alignment:
Q  70 caagcaaataaggttgcacatagcatagctagagcatccttatct 114  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||||    
T  16484213 caagctaataaggttgctcatagtattgctagagcatccttatct 16484169  T

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