View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5861-Insertion-3 (Length: 836)

Name: NF5861-Insertion-3
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5861-Insertion-3
NF5861-Insertion-3
[»] chr8 (4 HSPs)
chr8 (9-678)||(11401830-11402503)
chr8 (721-835)||(11401714-11401828)
chr8 (137-221)||(11402998-11403082)
chr8 (250-345)||(11403127-11403222)
[»] chr6 (3 HSPs)
chr6 (383-485)||(29303559-29303658)
chr6 (140-231)||(29303843-29303934)
chr6 (140-345)||(29303714-29303934)
[»] chr5 (5 HSPs)
chr5 (383-485)||(12529384-12529483)
chr5 (383-485)||(35841539-35841638)
chr5 (140-231)||(35841823-35841914)
chr5 (140-345)||(35841694-35841914)
chr5 (229-345)||(12529212-12529328)
[»] chr4 (7 HSPs)
chr4 (383-485)||(27730597-27730696)
chr4 (383-485)||(45965826-45965925)
chr4 (516-630)||(24146362-24146478)
chr4 (140-345)||(45965981-45966201)
chr4 (229-345)||(27730425-27730541)
chr4 (158-231)||(24146842-24146915)
chr4 (383-463)||(24146585-24146665)
[»] chr1 (3 HSPs)
chr1 (383-485)||(29282638-29282737)
chr1 (383-485)||(49220633-49220732)
chr1 (140-345)||(29282362-29282582)
[»] chr2 (4 HSPs)
chr2 (113-350)||(42300562-42300814)
chr2 (383-485)||(42913497-42913596)
chr2 (383-485)||(42300412-42300511)
chr2 (140-350)||(42913221-42913446)


Alignment Details
Target: chr8 (Bit Score: 599; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 9 - 678
Target Start/End: Complemental strand, 11402503 - 11401830
Alignment:
Q  9 gtaataacttcttcctttgccatatatagttgatagaaccaaaattgtttccaccttttggattgaaattgttctctcttttgatcgaagtttccatgtc 108  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11402503 gtaataacttcttcctttgccatatataattgatagaaccaaaattgtttccaccttttggattgaaattgttctctcttttgatcgaagttttcatgtc 11402404  T
Q  109 ctctcccatttgattggattcattaatattattgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacg 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11402403 ctctcccatttgattggattcattaatgttattgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgatg 11402304  T
Q  209 tgactttcgatacttccctgcaaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttct 308  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402303 tgacttttgatacttccctgcaaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttct 11402204  T
Q  309 ccaccaccttgttatccataatattttctccatacacgctcaaattttgtaacgggagaaaaatattgttccatgaacttgacatttcatacctttcgta 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11402203 ccaccaccttgttatccataatattttctccatacacgctcaaattttgtaacaggagaaaaatattgttccatgaacttgacatttcatacctttcgta 11402104  T
Q  409 atctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgtccctctttatttctttgataatttgt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  11402103 atctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaac---aacttcaatatgtccctctttatttctttgataatttgt 11402007  T
Q  509 gatattgcccttctacgagtattttcattagctccttgttgtgaagcaagctcaataaagctcccaatattgtgagctttaagatgtgttatc-atc--- 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||       
T  11402006 gatattgcccttctacgagtattttcattagctccttgttgtgaaccaagctcaataaagctcccaatattgtgagctttaagatgtgttatcaatcatc 11401907  T
Q  605 -aaaggt--tcaataactgaaatctaatttcgaaccgaacgatgttgtagttgttcatcataactctcttagaatat 678  Q
     ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11401906 aaaaggttctcaataactgaaatctaatttcgaaccgaacgatgttgtagttgttcatcataactctcttagaatat 11401830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 721 - 835
Target Start/End: Complemental strand, 11401828 - 11401714
Alignment:
Q  721 ctcttgttattcaacaaactttgatttactttacaacggactacaagacaccctttatataggctagctttccttacataatgaataaacctaatcacta 820  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11401828 ctcttgttattcaacacactttgatttactttacaacggactacaagacaccctttatataggctaggtttccttacataatgaataaacctaatcacta 11401729  T
Q  821 agatataatgtagag 835  Q
    |||||||||| ||||    
T  11401728 agatataatgaagag 11401714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 11402998 - 11403082
Alignment:
Q  137 ttattgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatac 221  Q
    ||||||| |||||| || ||||||| ||||||||||||| |||| || ||||||| ||||||| ||||||| |||||||||||||    
T  11402998 ttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttgacatgactttcgatac 11403082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 11403127 - 11403222
Alignment:
Q  250 ctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacac 345  Q
    ||||||||||||||||||||||||| |||  || ||| ||||| |   |||| ||||||||||||||||| |||||  ||||| ||||||||||||    
T  11403127 ctccattatcgtagtcaccacatgaccaaactttatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 11403222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 485
Target Start/End: Complemental strand, 29303658 - 29303559
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 482  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  29303658 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 29303562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 29303934 - 29303843
Alignment:
Q  140 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 231  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||    
T  29303934 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa 29303843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 345
Target Start/End: Complemental strand, 29303934 - 29303714
Alignment:
Q  140 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctg----------- 228  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||               
T  29303934 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgcta 29303835  T
Q  229 ----caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatc 324  Q
        |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||    
T  29303834 ccgacaaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatc 29303735  T
Q  325 cataatattttctccatacac 345  Q
       ||||| ||||||||||||    
T  29303734 ttgaatatcttctccatacac 29303714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 12529384 - 12529483
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 482  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  12529384 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 12529480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 485
Target Start/End: Complemental strand, 35841638 - 35841539
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 482  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  35841638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 35841542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 35841914 - 35841823
Alignment:
Q  140 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 231  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||    
T  35841914 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa 35841823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 345
Target Start/End: Complemental strand, 35841914 - 35841694
Alignment:
Q  140 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctg----------- 228  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||               
T  35841914 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgcta 35841815  T
Q  229 ----caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatc 324  Q
        |||||||||| |||| |||  ||||| |||| |||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||    
T  35841814 ccgacaaggtatcagtatcatgggactccaatatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatc 35841715  T
Q  325 cataatattttctccatacac 345  Q
       ||||| ||||||||||||    
T  35841714 ttgaatatcttctccatacac 35841694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 12529212 - 12529328
Alignment:
Q  229 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 328  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  12529212 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 12529311  T
Q  329 atattttctccatacac 345  Q
    |||| ||||||||||||    
T  12529312 atatcttctccatacac 12529328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 27730597 - 27730696
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 482  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  27730597 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 27730693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 485
Target Start/End: Complemental strand, 45965925 - 45965826
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 482  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  45965925 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 45965829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 516 - 630
Target Start/End: Complemental strand, 24146478 - 24146362
Alignment:
Q  516 cccttctacgagtattttcattagctccttgttgtgaagcaagctcaataaagctcccaatattgtgagctttaagatgtgttatcatcaaaggtt--ca 613  Q
    |||||||||||| |  ||||| ||||||||||||| || ||| ||||| ||||||||  || ||||||||||||||||||||| |||||| |  ||  ||    
T  24146478 cccttctacgagcaagttcatcagctccttgttgtaaaccaaactcaacaaagctccatatgttgtgagctttaagatgtgttgtcatcataaattccca 24146379  T
Q  614 ataactgaaatctaatt 630  Q
    |||||||||||||||||    
T  24146378 ataactgaaatctaatt 24146362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 345
Target Start/End: Complemental strand, 45966201 - 45965981
Alignment:
Q  140 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctg----------- 228  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||               
T  45966201 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgcta 45966102  T
Q  229 ----caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatc 324  Q
        ||||||||| ||||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||    
T  45966101 ccgacaaggtatcgatatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatc 45966002  T
Q  325 cataatattttctccatacac 345  Q
       ||||| ||||||||||||    
T  45966001 ttgaatatcttctccatacac 45965981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 27730425 - 27730541
Alignment:
Q  229 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 328  Q
    |||||||||| |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  27730425 caaggtatcagtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 27730524  T
Q  329 atattttctccatacac 345  Q
    |||| ||||||||||||    
T  27730525 atatcttctccatacac 27730541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 24146915 - 24146842
Alignment:
Q  158 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 231  Q
    |||||||||||||||||| |||| || ||||| | ||||||||| ||||| || ||||| || |||||||||||    
T  24146915 ttcaaggcttcctcctttactttttcagtcttatccaatattctattgacatggctttcaatgcttccctgcaa 24146842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 463
Target Start/End: Complemental strand, 24146665 - 24146585
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgt 463  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| |||||  ||||||| ||||    
T  24146665 gaactagacatttcatacctttcgtactctctacgcagagactgcaactttgatttctgagctttcttcactcctttatgt 24146585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 29282638 - 29282737
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 482  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  29282638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 29282734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 49220633 - 49220732
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 482  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  49220633 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 49220729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 345
Target Start/End: Original strand, 29282362 - 29282582
Alignment:
Q  140 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctg----------- 228  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||               
T  29282362 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgcta 29282461  T
Q  229 ----caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatc 324  Q
        |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||    
T  29282462 ccgacaaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatc 29282561  T
Q  325 cataatattttctccatacac 345  Q
       ||||| ||||||||||||    
T  29282562 ttgaatatcttctccatacac 29282582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 113 - 350
Target Start/End: Complemental strand, 42300814 - 42300562
Alignment:
Q  113 cccatttgattggattcattaatattattgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgac 212  Q
    ||||| ||| ||||||||  ||| || |||| |||||| || || |||||||||||||||||| | || ||  |||||| ||||||||||||||| || |    
T  42300814 cccatctgactggattcaacaatgttgttgaggttcacctggctcttcaaggcttcctcctttacattttcactcttctccaatattctgttgacatggc 42300715  T
Q  213 tttcgatacttccctgcaa---------------ggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattaca 297  Q
    |||| || |||||||||||               ||||||  ||||||||  ||||| ||||||||||||||||||||||  |||||||  |||  | ||    
T  42300714 tttcaatgcttccctgcaactctgctaccgacaaggtatcggtatcgtgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgca 42300615  T
Q  298 tagacttttctccaccaccttgttatccataatattttctccatacacgctca 350  Q
    |||| ||||||||||||||||| ||||   ||||| |||||||||||| ||||    
T  42300614 tagaattttctccaccaccttgctatcttgaatatcttctccatacactctca 42300562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 42913497 - 42913596
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 482  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| |||||||||||||| |||| ||   |||||||||||||    
T  42913497 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctgagctttctctactcctttatgtgac---aacttcaatatgt 42913593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 383 - 485
Target Start/End: Complemental strand, 42300511 - 42300412
Alignment:
Q  383 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactccttcatgtaacaataacttcaatatgt 482  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| |||||  || |||||||||||||| |||| ||   |||||||||||||    
T  42300511 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctaagctttctctactcctttatgtgac---aacttcaatatgt 42300415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 350
Target Start/End: Original strand, 42913221 - 42913446
Alignment:
Q  140 ttgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctg----------- 228  Q
    |||| |||||| || || |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||               
T  42913221 ttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgcta 42913320  T
Q  229 ----caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatc 324  Q
        |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||    
T  42913321 ccgacaaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatc 42913420  T
Q  325 cataatattttctccatacacgctca 350  Q
       ||||| |||||||||||| ||||    
T  42913421 ttgaatatcttctccatacactctca 42913446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University