View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5861-Insertion-4 (Length: 797)

Name: NF5861-Insertion-4
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5861-Insertion-4
NF5861-Insertion-4
[»] chr5 (37 HSPs)
chr5 (9-562)||(30703985-30704535)
chr5 (560-793)||(30704630-30704861)
chr5 (9-340)||(30064245-30064574)
chr5 (110-340)||(30052365-30052593)
chr5 (571-735)||(30052142-30052308)
chr5 (571-718)||(30658471-30658618)
chr5 (403-522)||(43262683-43262804)
chr5 (614-786)||(30063995-30064186)
chr5 (347-503)||(13312611-13312777)
chr5 (381-523)||(7156084-7156226)
chr5 (199-322)||(30658239-30658363)
chr5 (348-490)||(42034781-42034934)
chr5 (348-490)||(22169482-22169635)
chr5 (425-492)||(19621492-19621559)
chr5 (72-204)||(30658063-30658193)
chr5 (338-503)||(35922745-35922920)
chr5 (348-490)||(33958911-33959064)
chr5 (338-428)||(43262793-43262883)
chr5 (348-428)||(15221662-15221742)
chr5 (348-428)||(19621565-19621645)
chr5 (425-475)||(30045888-30045938)
chr5 (425-471)||(38521987-38522033)
chr5 (168-265)||(25947466-25947562)
chr5 (162-230)||(30741775-30741843)
chr5 (193-272)||(30579051-30579130)
chr5 (425-467)||(2477302-2477344)
chr5 (336-386)||(31189500-31189550)
chr5 (161-199)||(32384598-32384636)
chr5 (348-422)||(36169337-36169410)
chr5 (425-475)||(43461720-43461770)
chr5 (162-272)||(32391568-32391682)
chr5 (338-389)||(7156006-7156057)
chr5 (363-430)||(22169408-22169475)
chr5 (338-389)||(31189710-31189761)
chr5 (181-230)||(23410230-23410279)
chr5 (199-260)||(32611089-32611150)
chr5 (348-389)||(35922644-35922685)
[»] chr4 (23 HSPs)
chr4 (338-522)||(24669178-24669361)
chr4 (340-503)||(1966758-1966928)
chr4 (348-504)||(42908579-42908745)
chr4 (336-429)||(9808998-9809091)
chr4 (348-490)||(17633273-17633425)
chr4 (336-423)||(17633439-17633526)
chr4 (336-429)||(9810684-9810777)
chr4 (425-490)||(33179778-33179843)
chr4 (169-297)||(4227371-4227499)
chr4 (425-475)||(16583636-16583686)
chr4 (338-503)||(9809087-9809264)
chr4 (348-429)||(16583532-16583613)
chr4 (348-475)||(14351102-14351240)
chr4 (338-503)||(19596795-19596971)
chr4 (425-473)||(8740810-8740858)
chr4 (338-491)||(9810784-9810951)
chr4 (348-430)||(55666916-55666997)
chr4 (425-490)||(33249635-33249700)
chr4 (425-474)||(55666845-55666894)
chr4 (425-503)||(35544439-35544515)
chr4 (425-470)||(2433756-2433801)
chr4 (338-401)||(19596706-19596769)
chr4 (348-391)||(25007632-25007675)
[»] chr1 (24 HSPs)
chr1 (336-522)||(5855111-5855294)
chr1 (348-503)||(29677017-29677181)
chr1 (363-518)||(2996010-2996164)
chr1 (338-471)||(34490231-34490376)
chr1 (338-491)||(5831556-5831720)
chr1 (349-471)||(25238520-25238653)
chr1 (340-475)||(38951947-38952093)
chr1 (425-476)||(42604257-42604308)
chr1 (363-471)||(29167757-29167875)
chr1 (365-503)||(9468121-9468261)
chr1 (338-428)||(13350909-13350999)
chr1 (348-463)||(2569960-2570086)
chr1 (346-428)||(9929870-9929952)
chr1 (425-503)||(34364244-34364321)
chr1 (345-429)||(34490122-34490205)
chr1 (338-401)||(13351010-13351073)
chr1 (364-426)||(38244801-38244863)
chr1 (348-429)||(38951840-38951922)
chr1 (338-390)||(28499662-28499714)
chr1 (348-400)||(34364169-34364221)
chr1 (360-391)||(29168551-29168582)
chr1 (338-389)||(29677206-29677257)
chr1 (363-428)||(5855057-5855122)
chr1 (348-389)||(9929662-9929703)
[»] chr3 (39 HSPs)
chr3 (338-512)||(27335315-27335488)
chr3 (352-503)||(3785975-3786135)
chr3 (336-503)||(31545629-31545806)
chr3 (338-463)||(18733538-18733662)
chr3 (377-512)||(27364960-27365094)
chr3 (348-503)||(3823664-3823829)
chr3 (336-487)||(26308559-26308721)
chr3 (394-514)||(27326016-27326135)
chr3 (394-514)||(27332253-27332372)
chr3 (338-503)||(22432343-22432518)
chr3 (425-503)||(42637975-42638052)
chr3 (338-490)||(19280223-19280385)
chr3 (356-461)||(33488301-33488406)
chr3 (338-430)||(3823577-3823669)
chr3 (339-490)||(5341901-5342063)
chr3 (425-503)||(4169124-4169201)
chr3 (425-503)||(13358111-13358188)
chr3 (425-491)||(27707697-27707763)
chr3 (427-475)||(1705691-1705739)
chr3 (425-475)||(11501310-11501360)
chr3 (425-475)||(19624345-19624395)
chr3 (425-503)||(42481313-42481390)
chr3 (336-389)||(9710850-9710903)
chr3 (425-490)||(44080282-44080346)
chr3 (338-430)||(3785888-3785980)
chr3 (358-492)||(39126187-39126333)
chr3 (425-491)||(27079315-27079381)
chr3 (425-491)||(27085112-27085178)
chr3 (341-429)||(42638048-42638136)
chr3 (425-460)||(9710743-9710778)
chr3 (425-503)||(34627318-34627396)
chr3 (348-429)||(44080192-44080274)
chr3 (366-429)||(19280152-19280215)
chr3 (449-503)||(11509916-11509969)
chr3 (348-401)||(11501244-11501297)
chr3 (350-391)||(13359011-13359052)
chr3 (348-425)||(27040683-27040760)
chr3 (363-428)||(27079388-27079453)
chr3 (363-428)||(27085185-27085250)
[»] scaffold0291 (1 HSPs)
scaffold0291 (372-522)||(5851-6000)
[»] chr8 (23 HSPs)
chr8 (348-522)||(15233222-15233395)
chr8 (336-503)||(15714614-15714791)
chr8 (348-503)||(38606759-38606924)
chr8 (341-516)||(28700149-28700324)
chr8 (427-490)||(29367076-29367139)
chr8 (338-474)||(5573821-5573968)
chr8 (425-475)||(5321981-5322031)
chr8 (336-429)||(31596719-31596812)
chr8 (425-474)||(1240920-1240969)
chr8 (338-429)||(1251568-1251659)
chr8 (338-429)||(31273654-31273745)
chr8 (338-429)||(38606920-38607011)
chr8 (425-503)||(26493356-26493432)
chr8 (425-474)||(1251496-1251545)
chr8 (338-401)||(24576180-24576243)
chr8 (338-429)||(33286143-33286234)
chr8 (331-429)||(5573699-5573797)
chr8 (338-428)||(15233144-15233233)
chr8 (425-490)||(31596820-31596884)
chr8 (444-491)||(32959584-32959631)
chr8 (425-491)||(6809819-6809885)
chr8 (348-429)||(5322054-5322135)
chr8 (371-428)||(6295947-6296004)
[»] chr7 (22 HSPs)
chr7 (340-522)||(32964757-32964937)
chr7 (336-503)||(28804906-28805085)
chr7 (363-503)||(31303466-31303615)
chr7 (352-503)||(21589636-21589797)
chr7 (348-490)||(4290852-4291004)
chr7 (349-503)||(21548465-21548629)
chr7 (407-522)||(46943743-46943858)
chr7 (348-489)||(18312852-18313004)
chr7 (425-503)||(20556779-20556856)
chr7 (348-429)||(31303389-31303470)
chr7 (348-428)||(22033158-22033238)
chr7 (425-503)||(22740678-22740755)
chr7 (345-401)||(15958434-15958490)
chr7 (363-428)||(5083739-5083803)
chr7 (363-428)||(15958259-15958324)
chr7 (348-429)||(18312763-18312844)
chr7 (348-428)||(28805116-28805196)
chr7 (425-471)||(5174910-5174956)
chr7 (363-429)||(20556717-20556783)
chr7 (348-389)||(22032996-22033037)
chr7 (425-476)||(27523506-27523557)
chr7 (425-490)||(5083811-5083875)
[»] chr2 (11 HSPs)
chr2 (338-503)||(1400695-1400870)
chr2 (338-474)||(28527244-28527391)
chr2 (348-503)||(30905982-30906147)
chr2 (338-429)||(30906143-30906234)
chr2 (336-490)||(33667340-33667505)
chr2 (338-475)||(34175159-34175296)
chr2 (425-504)||(45305978-45306056)
chr2 (425-503)||(43900541-43900618)
chr2 (348-422)||(41212411-41212484)
chr2 (347-429)||(43900463-43900545)
chr2 (348-423)||(45305903-45305978)
[»] chr6 (25 HSPs)
chr6 (338-503)||(9068419-9068593)
chr6 (348-475)||(10304632-10304769)
chr6 (425-503)||(33815035-33815112)
chr6 (348-520)||(2834958-2835140)
chr6 (352-503)||(138650-138811)
chr6 (352-503)||(146671-146832)
chr6 (425-503)||(3222444-3222521)
chr6 (338-429)||(22608287-22608377)
chr6 (338-423)||(7915696-7915781)
chr6 (348-428)||(30056057-30056138)
chr6 (338-429)||(23595080-23595171)
chr6 (425-463)||(2430626-2430664)
chr6 (363-429)||(3222382-3222448)
chr6 (425-490)||(3620779-3620844)
chr6 (426-471)||(9474673-9474718)
chr6 (341-401)||(18980401-18980461)
chr6 (367-422)||(2365649-2365704)
chr6 (352-425)||(24386312-24386385)
chr6 (372-428)||(2430650-2430706)
chr6 (349-401)||(11108102-11108154)
chr6 (338-428)||(7706785-7706876)
chr6 (425-464)||(23595195-23595234)
chr6 (363-429)||(10304792-10304858)
chr6 (363-429)||(33815108-33815174)
chr6 (336-405)||(23595262-23595331)
[»] scaffold0043 (1 HSPs)
scaffold0043 (394-514)||(87024-87143)
[»] scaffold0024 (1 HSPs)
scaffold0024 (355-518)||(112143-112306)
[»] scaffold1126 (2 HSPs)
scaffold1126 (346-503)||(137-305)
scaffold1126 (338-429)||(301-392)
[»] scaffold0251 (2 HSPs)
scaffold0251 (425-491)||(10634-10700)
scaffold0251 (348-429)||(10707-10788)
[»] scaffold0123 (1 HSPs)
scaffold0123 (425-471)||(24040-24086)
[»] scaffold0126 (1 HSPs)
scaffold0126 (363-426)||(21575-21638)


Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 562
Target Start/End: Original strand, 30703985 - 30704535
Alignment:
Q  9 tttttatgattaattttgtgcttaatgtttatta---caatataannnnnnngacccatccgagattttctttccgattccgccactatttatacccaag 105  Q
    ||||||||||||||||||||||||||||||||||   ||||||||       |||||||||||||||||||||| |||||||||||||||||||||||||    
T  30703985 tttttatgattaattttgtgcttaatgtttattagtacaatataatttttttgacccatccgagattttctttctgattccgccactatttatacccaag 30704084  T
Q  106 taagtgtatcgtaggatcaatttatgttgttgataaaatcattggnnnnnnnntgtgaatgtgtatttaattttgtaattgcatgatttattttacatta 205  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||||||||||||||||||||    
T  30704085 taagtgtatggtagaatcaatttatgttgttgataaaatcattggaaaaaaaatgtgactgtgtatttaattttgtaattgcatgatttattttacatta 30704184  T
Q  206 tcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaaactaaaactgcttttaaaaattattcgtatatctaataat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  30704185 tcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaaac------tgcttttaaaaattattcgtatatctaataat 30704278  T
Q  306 taattgaaatatgttcttagggcagctttgtatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgttt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  30704279 taattgaaatatgttcttagggcagctttgtatgtacacctttttgtaccactctgtaaaatttcagttaatcaaatatatggtctccgtgactacgttt 30704378  T
Q  406 atttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgc 505  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30704379 atttagttgcgtgatcactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgc 30704478  T
Q  506 tagaaaaatagtggtcattggtcacgctgaaatttttcaaagtcgtataaagaagtg 562  Q
    | |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  30704479 tggaaaaataatggtcattggtcacgctgaaatttttcaaagtgatataaagaagtg 30704535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 560 - 793
Target Start/End: Original strand, 30704630 - 30704861
Alignment:
Q  560 gtggtatgccttttttcttgcgctgaagagcacatcttaatatctatatacttgaaggatccgattgatttttcatggctcctttgctaccatctcatgt 659  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  30704630 gtggtatgccttttt-cttgcg-tgaagagcacatcttaatatctatatacttgaaggatccgattgatttttcatggctcctttaccaccagctcatgt 30704727  T
Q  660 tgttgatatcattgtcagcagagaagaggtagtgctatttcatgtagttagtgcttcaattcagcgacaacttactgttgatgttaatgacaggtggcgg 759  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30704728 tgttgatatcattgtcagcagagaagaggtagtgctatttcatgtagttagttcttcaattcagcgacaacttactgttgatgttaatgacaggtggcgg 30704827  T
Q  760 tggaatttgcactcttcaaataattacgttgttt 793  Q
    ||||||||||||||||||||||||||| ||||||    
T  30704828 tggaatttgcactcttcaaataattacattgttt 30704861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 9 - 340
Target Start/End: Complemental strand, 30064574 - 30064245
Alignment:
Q  9 tttttatgattaattttgtgcttaatgtttattacaatataannnnnnngacccatccgagattttctttccgattccgccactatttatacccaagtaa 108  Q
    |||| ||||| ||||||||||||| | | |||||||||||||        |||||| |||||||||||||| || ||||||||||||||||| |||||||    
T  30064574 ttttaatgatcaattttgtgcttattatgtattacaatataatttttttaacccatacgagattttctttctgactccgccactatttatacacaagtaa 30064475  T
Q  109 g-tgtatcgtaggatcaatttatgttgttgataaaatcattggnnnnnnnntgtgaatgtgtatttaattttgtaattgcatgatttattttacattatc 207  Q
      ||||| |||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30064474 aatgtatggtaggatcaattcatgttgttgataaaatcatt--aaaaaaaatgtgaatgtgtatttaattttgtaattgcatgatttattatacattatc 30064377  T
Q  208 attcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaaactaaaactgcttttaaaaattattcgtatatctaataatta 307  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |    
T  30064376 attcaaaccaattatataattcatattgattt-aaaaataatttggtattgaatgtaaactaaaatttcttttaaaaattattcatatatctaataatga 30064278  T
Q  308 attgaaatatgttcttagggcagctttgtatgt 340  Q
    |||||||  ||||||||||| ||||||||||||    
T  30064277 attgaaacgtgttcttagggaagctttgtatgt 30064245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 110 - 340
Target Start/End: Complemental strand, 30052593 - 30052365
Alignment:
Q  110 tgtatcgtaggatcaatttatgttgttgataaaatcattggnnnnnnnntgtgaatgtgtatttaattttgtaattgcatgatttattttacattatcat 209  Q
    ||||| |||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  30052593 tgtatggtaggatcaatttatgttgttgataaaatcatt--aaaaaaaatgtggatgtgtatttaattttgtaattgcatgatttattatacattatcat 30052496  T
Q  210 tcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaaactaaaactgcttttaaaaattattcgtatatctaataattaat 309  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||| | |    
T  30052495 tcaaaccaattatataattcatattgatttaaaaaataatttggtattgaatgtaaactaaaatatcttttaaaaattattcatatatctaataatgatt 30052396  T
Q  310 tgaaatatgttcttagggcagctttgtatgt 340  Q
    |||||||||||||||||| ||||||||||||    
T  30052395 tgaaatatgttcttagggaagctttgtatgt 30052365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 571 - 735
Target Start/End: Complemental strand, 30052308 - 30052142
Alignment:
Q  571 tttttcttgcgctgaagagcacatcttaatatctatatacttgaaggatccgattgatttttcatggctcctttgctac--catctcatgttgttgatat 668  Q
    ||||||||| ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||| | ||  |||||||||||||||||||    
T  30052308 tttttcttgggctgaagagcacatcttaatatctatgcacttcaaggatccgattgatttttcatggctcctttaccacaccatctcatgttgttgatat 30052209  T
Q  669 cattgtcagcagagaagaggtagtgctatttcatgtagttagtgcttcaattcagcgacaacttact 735  Q
     | ||| ||||||||||||| ||||||||||| | || |||||||||||||||||||||||||||||    
T  30052208 gaatgttagcagagaagaggcagtgctatttcttctacttagtgcttcaattcagcgacaacttact 30052142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 571 - 718
Target Start/End: Original strand, 30658471 - 30658618
Alignment:
Q  571 tttttcttgcgctgaagagcacatcttaatatctatatacttgaaggatccgattgatttttcatggctcctttgctaccatctcatgttgttgatatca 670  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  30658471 tttttcttgggctgaagagcacatcttagtatctatgtacttgaaggatccgattgatttttcatggctcctttaccaccatctcatgttgttgatatca 30658570  T
Q  671 ttgtcagcagagaagaggtagtgctatttcatgtagttagtgcttcaa 718  Q
     ||| | ||||||||||||||||||| | ||| |||||||||||||||    
T  30658571 atgttaacagagaagaggtagtgctactccatctagttagtgcttcaa 30658618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 403 - 522
Target Start/End: Original strand, 43262683 - 43262804
Alignment:
Q  403 tttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttt--ttcagctttta 500  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  43262683 tttatttagttgcgtgaccattatctatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacatttttcttcagctttta 43262782  T
Q  501 aatgctagaaaaatagtggtca 522  Q
    |||| | |||||||||| ||||    
T  43262783 aatgttggaaaaatagtagtca 43262804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 614 - 786
Target Start/End: Complemental strand, 30064186 - 30063995
Alignment:
Q  614 aaggatccgattgatttttcatggctcctttgcta---------ccatctcatgttgttgatatcattgtcagcagagaagaggtagtgctatttcatgt 704  Q
    ||||||||||||||||||||||||||||||| | |         |||||||||||||||||||| | ||| ||||||||||||| ||||||||||| | |    
T  30064186 aaggatccgattgatttttcatggctcctttaccagttaccacaccatctcatgttgttgatatgaatgttagcagagaagaggcagtgctatttcttct 30064087  T
Q  705 agttagtgcttcaattcagcgacaacttactgt----------tgatgttaatgacaggtggcggtggaatttgcactcttcaaataattac 786  Q
    | |||||||||||||||||||||||||||||||          |||||||||| ||||||||||||||||||| || |||||||||||||||    
T  30064086 acttagtgcttcaattcagcgacaacttactgttcccgtaggatgatgttaataacaggtggcggtggaatttacattcttcaaataattac 30063995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 347 - 503
Target Start/End: Complemental strand, 13312777 - 13312611
Alignment:
Q  347 ttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggt 435  Q
    ||||||||||||||| ||||||||||||||||| ||||||| | |  |||||||| ||| ||||||||||||||||||||||           |||||||    
T  13312777 ttttgtaccactctgaaaaatttcagttaaccatatatatgatttgtgtgaccacatttttttagttgcgtgaccactatttttccataatttatttggt 13312678  T
Q  436 taactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||||||||| | ||||||||||||||||| | |||||||| |||||||||| |||||    
T  13312677 taactaagtggaaaaatagttgccacgcgcattttagttgcgtgaccacat-ttttcagcttctaaat 13312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 381 - 523
Target Start/End: Complemental strand, 7156226 - 7156084
Alignment:
Q  381 atatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcga 480  Q
    ||||||||||   |||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||  |||||||||| ||||    
T  7156226 atatatggtccgtgtgaccacatttttttagttgtgtgaccactatttatttggttaattaagtggaaaaataatggtcacgcatattttagttgcgcga 7156127  T
Q  481 ccacattttttcagcttttaaatgct-agaaaaatagtggtcat 523  Q
     |||| ||||||||||| ||||| || | |||||||||||||||    
T  7156126 tcaca-tttttcagcttctaaattctgaaaaaaatagtggtcat 7156084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 30658239 - 30658363
Alignment:
Q  199 tacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggt-----attgaatgtaaactaaaactgcttttaaaaattattcgt 293  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     |||||||||||||||||| || |||||||| | ||||      
T  30658239 tacattatcattcaaatcaattatataattcatattgatttaaaaaataatttggtactgaattgaatgtaaactaaaattgattttaaaattgattc-- 30658336  T
Q  294 atatctaataattaattgaaatatgttct 322  Q
      || ||||||| ||||||||||||||||    
T  30658337 --atataataatgaattgaaatatgttct 30658363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 348 - 490
Target Start/End: Complemental strand, 42034934 - 42034781
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta-----------tttatttggtt 436  Q
    |||||||||||||  |||||||||||| | |||||||||||| |  || | ||| ||| |||||||||||||||||||           |||||||||||    
T  42034934 tttgtaccactctaaaaaatttcagttgatcaaatatatggtatgtgtaatcacatttttttagttgcgtgaccactagttttccaaaatttatttggtt 42034835  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    |||||||||||||||||||||||||| |||||||||||| | ||||||||||||    
T  42034834 aactaagtggaaaaatagtggtcacgtgcattttagttgcgtgaccacattttt 42034781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 348 - 490
Target Start/End: Complemental strand, 22169635 - 22169482
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 436  Q
    |||||||||||||| ||| ||| |||||||||||| |||| | |  |||||||| ||| |||||||||||||||| |||||           ||||||||    
T  22169635 tttgtaccactctgaaaatttttagttaaccaaatttatgatatgtgtgaccacatttttttagttgcgtgaccattattttttcaaaatttatttggtt 22169536  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    ||||| || |||||||||||||||||||||||||||||| | ||||||||||||    
T  22169535 aactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacattttt 22169482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 425 - 492
Target Start/End: Original strand, 19621492 - 19621559
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttc 492  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||    
T  19621492 atttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacgttttttc 19621559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 30658063 - 30658193
Alignment:
Q  72 tttctttccgattccgccactatttatacccaagtaag-tgtatcgtaggatcaatttatgttgttgataaaatcattggnnnnnnnntgtgaatgtgta 170  Q
    |||||||| || ||||||||||||||||| |||||||  ||||| |||||||||||| |||||| ||||||| ||||||           ||||||||||    
T  30658063 tttctttctgactccgccactatttatacacaagtaaaatgtatggtaggatcaattcatgttgctgataaagtcattgaaaaaaaa---tgaatgtgta 30658159  T
Q  171 tttaattttgtaattgcatgatttattttacatt 204  Q
    ||||||||||||||||||||||||||| ||||||    
T  30658160 tttaattttgtaattgcatgatttattatacatt 30658193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 503
Target Start/End: Complemental strand, 35922920 - 35922745
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------at 426  Q
    ||||||||  |||||| |||| || ||||||| |||||||||||| ||||||||  | |||||  ||| || |||||| ||||||||           ||    
T  35922920 tgtacaccgctttgtatcactttgaaaaatttaagttaaccaaatttatggtctgtgggaccatattttttaagttgcatgaccactattttttcagaat 35922821  T
Q  427 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||||| | ||||||| ||||||||||| |||||    
T  35922820 ttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccaca-tttttcagcttctaaat 35922745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 348 - 490
Target Start/End: Original strand, 33958911 - 33959064
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 436  Q
    |||||||||||||| ||||||||| |||||||||||||||||||  || | ||| ||| ||||| ||| ||||||| ||||           |||||||     
T  33958911 tttgtaccactctgaaaaatttcacttaaccaaatatatggtctatgtaatcacatttttttagctgcatgaccacaatttttccagaatttatttggtc 33959010  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    |||||||||||||||||||||| || || |||||||||| | ||||| ||||||    
T  33959011 aactaagtggaaaaatagtggttactcggattttagttgcgtgaccatattttt 33959064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 43262883 - 43262793
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    ||||||||  ||||||| ||| || |||||||||||||||||||||||||||||  |||||||| ||| |||||||  ||||| |||||||    
T  43262883 tgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacatttgtttagttatgtgactactattt 43262793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 15221742 - 15221662
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||| || |||| ||||||||||||||| |||||||||||||  |||||||| ||| |||| ||| |||||||||||||    
T  15221742 tttgtatcattctgaaaaatttcagttaactaaatatatggtctgtgtgaccacatttttttaattgtgtgaccactattt 15221662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 19621645 - 19621565
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    ||||||||| |||| ||||||||||||||||||||||||||| |  |||||||| ||| |  | |||||||||||||||||    
T  19621645 tttgtaccattctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacatttttccatttgcgtgaccactattt 19621565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 30045938 - 30045888
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  30045938 atttatttggttaattaaatggaaaaatagtggtcacgcgtattttagttg 30045888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 38521987 - 38522033
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 471  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||    
T  38521987 atttatttagttaactaagtgtaaaaatagtggtcacgcgcatttta 38522033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 25947562 - 25947466
Alignment:
Q  168 gtatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaa 265  Q
    |||| ||||||||| ||| ||||||| ||| |||||||| ||||| ||||||||||||||| ||||  |||||  |||||||||  ||||||||||||    
T  25947562 gtatataattttgtgatttcatgattaattatacattattattcacatcaattatataattaatatttatttatgaaataattt-atattgaatgtaa 25947466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 30741843 - 30741775
Alignment:
Q  162 gaatgtgtatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattca 230  Q
    |||||||||| |||| ||||||||||| |||||||| |||| || |||||| ||||| |||||||||||    
T  30741843 gaatgtgtatataatgttgtaattgcacgatttattctacactaccattcacatcaaatatataattca 30741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 30579130 - 30579051
Alignment:
Q  193 ttattttacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaaactaaaa 272  Q
    ||||| |||||||||||||| || |||| |||||||| ||| ||||||  ||||||||||  ||||||||||||| ||||    
T  30579130 ttattctacattatcattcatattaattgtataattcctattgatttactaaataatttgacattgaatgtaaaccaaaa 30579051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 467
Target Start/End: Complemental strand, 2477344 - 2477302
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcat 467  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  2477344 atttatttggttaactaagtcgaaaaatagtggccacgcgcat 2477302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 31189500 - 31189550
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatat 386  Q
    |||||||| | ||||||||||||||  ||||||||||||||||||||||||    
T  31189500 tatgtacaacattttgtaccactctcgaaaatttcagttaaccaaatatat 31189550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 32384636 - 32384598
Alignment:
Q  161 tgaatgtgtatttaattttgtaattgcatgatttatttt 199  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  32384636 tgaatgtgtatttaattttgtaattgcatgatttttttt 32384598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 36169337 - 36169410
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgacca 422  Q
    ||||||||||| || ||||||| |||||||||||||||||||    |||||||| ||| ||||||||||||||||    
T  36169337 tttgtaccactttgaaaaattttagttaaccaaatatatggtaggtgtgaccacattt-tttagttgcgtgacca 36169410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 43461720 - 43461770
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    |||||||||||| ||||||||||||||||||||| ||| | ||||||||||    
T  43461720 atttatttggtttactaagtggaaaaatagtggttacgtgaattttagttg 43461770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 272
Target Start/End: Complemental strand, 32391682 - 32391568
Alignment:
Q  162 gaatgtgtatttaattttgtaattgcatgatttattttac----attatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtatt 257  Q
    ||||||| ||||| ||||||||||||||||||| ||||||    ||| |||||   ||||| ||||  ||||||||  ||||| |||||||| |  ||||    
T  32391682 gaatgtgcatttacttttgtaattgcatgattttttttacctacattctcatttgcatcaaatatacgattcatatttatttacaaaataatgttatatt 32391583  T
Q  258 gaatgtaaactaaaa 272  Q
    |||||||||||||||    
T  32391582 gaatgtaaactaaaa 32391568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 7156006 - 7156057
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggt 389  Q
    |||||| |||||||||||||| |  |||||||||||||| ||||||||||||    
T  7156006 tgtacatctttttgtaccactttagaaaatttcagttaatcaaatatatggt 7156057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 430
Target Start/End: Original strand, 22169408 - 22169475
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat 430  Q
    ||||||||||||||| ||||||||||  |  |||| ||| ||| || |||||||||||||||||||||    
T  22169408 aaaatttcagttaactaaatatatggaatatgtgatcacattttttcagttgcgtgaccactatttat 22169475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 389
Target Start/End: Complemental strand, 31189761 - 31189710
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggt 389  Q
    ||||||||  ||||||||||| |  |||||||||||||||||||||||||||    
T  31189761 tgtacacccctttgtaccactttaaaaaatttcagttaaccaaatatatggt 31189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 23410279 - 23410230
Alignment:
Q  181 taattgcatgatttattttacattatcattcaaatcaattatataattca 230  Q
    ||||||||| |||||||  ||||||||||||| ||||||| |||||||||    
T  23410279 taattgcattatttattcaacattatcattcacatcaattttataattca 23410230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 32611089 - 32611150
Alignment:
Q  199 tacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaa 260  Q
    |||||| ||||||| || | ||||||||||||||| |||||  |||||||||||| ||||||    
T  32611089 tacattctcattcacataagttatataattcatattgatttccaaaataatttggaattgaa 32611150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 35922644 - 35922685
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggt 389  Q
    |||||| ||||||| |||||||||||||| ||||||||||||    
T  35922644 tttgtatcactctgaaaaatttcagttaatcaaatatatggt 35922685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 7e-45; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 338 - 522
Target Start/End: Complemental strand, 24669361 - 24669178
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggtta 437  Q
    ||||||||  |||||||||||||| ||||||| |||||| ||||||||||||||  |||||||| ||| || ||||||||||||||||||||||||||||    
T  24669361 tgtacacccctttgtaccactctgaaaaatttaagttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactatttatttggtta 24669262  T
Q  438 actaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 522  Q
    |||||||| ||||||||||||||| || |||||||||| | ||||| | ||||| || || ||||||||  ||||||||||||||    
T  24669261 actaagtgaaaaaatagtggtcacacgaattttagttgcgtgaccata-tttttgagtttctaaatgctgaaaaaatagtggtca 24669178  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 340 - 503
Target Start/End: Original strand, 1966758 - 1966928
Alignment:
Q  340 tacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------attt 428  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||||||| ||| ||||||||||||||||||           ||||    
T  1966758 tacacccttttgtaccactctg-aaaatttcagttaaccaaatatatggtctgtgtgaccacattt-tttagttgcgtgaccactagttttccagaattt 1966855  T
Q  429 atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||| |||||    
T  1966856 atttggttaattaagtggaaaaatagtggtcacgcgca-tttagttgcgtgaccaca-tttttcagcttctaaat 1966928  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 348 - 504
Target Start/End: Complemental strand, 42908745 - 42908579
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 436  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |  |||||||| ||| |||||||| || ||||||||||           ||||||||    
T  42908745 tttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacattt-tttagttgagtcaccactatttttccagaatttatttggtt 42908647  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatg 504  Q
    ||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||| ||||||||||    
T  42908646 aactaagaggaaacatagtggtcacgcgcattttagttgcgtgatcacattttttcaacttttaaatg 42908579  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 336 - 429
Target Start/End: Original strand, 9808998 - 9809091
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||||||| ||||||||| || || |||| |||||||||| ||||||||||||| ||||||||| ||| || ||||||||||||||||||||    
T  9808998 tatgtacacccttttgtaccgctatgaaaaaattcagttaactaaatatatggtctgcgtgaccacattttttcagttgcgtgaccactattta 9809091  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 348 - 490
Target Start/End: Original strand, 17633273 - 17633425
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 436  Q
    |||||||||||| | ||||||| |||||||||||||||||||||  |||||||| ||| ||||| ||| ||||||| ||||           ||||||||    
T  17633273 tttgtaccactccgaaaaattttagttaaccaaatatatggtctgtgtgaccacattt-tttagatgcatgaccacaatttgtccaaaatttatttggtt 17633371  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    ||||||||  ||||||||||||||||||||||||||||| | ||||| ||||||    
T  17633372 aactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatattttt 17633425  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 17633526 - 17633439
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccac 423  Q
    ||||||||||  ||||||||||| || |||||||||||||||||||||||||||||  |||||||| ||| || ||||||||||||||    
T  17633526 tatgtacacccctttgtaccactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccac 17633439  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 336 - 429
Target Start/End: Original strand, 9810684 - 9810777
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||||||| |||||||||||| || ||||||||||||||  ||||||||||| | ||| ||||| ||| || ||||||||||||||||||||    
T  9810684 tatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatatggtttgcgttaccacattttttcagttgcgtgaccactattta 9810777  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 33179778 - 33179843
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  33179778 atttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacattttt 33179843  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 169 - 297
Target Start/End: Original strand, 4227371 - 4227499
Alignment:
Q  169 tatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaaact 268  Q
    ||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||| ||||||| || |||||  ||||||| |||||| ||||| |||||     
T  4227371 tatttaaatttttaatttcatgatttattctacattatcattcacatcaattatgtaattcacattgatttgcaaaataaattggtactgaatataaaca 4227470  T
Q  269 aaaactgcttttaaaaattattcgtatat 297  Q
     ||| || |||| ||||| |||| |||||    
T  4227471 gaaattgtttttcaaaatgattcatatat 4227499  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 16583686 - 16583636
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16583686 atttatttggttaattaagtggaaaaatagtggtcacgcgcattttagttg 16583636  T

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Target: chr4; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 338 - 503
Target Start/End: Complemental strand, 9809264 - 9809087
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt--agttgcgtgaccactattt------- 428  Q
    |||| |||| |||||||||||||  ||| ||| |||||||||| ||||||||||  |||||||| ||| |||  ||||||||||||| | |||           
T  9809264 tgtaaacctatttgtaccactctagaaattttaagttaaccaagtatatggtctgtgtgaccacatttttttttagttgcgtgaccattttttttccata 9809165  T
Q  429 ----atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
        |||||||||||||| |||||||||||||||||||||||||| ||||| | ||| ||| ||||||||||| |||||    
T  9809164 aattatttggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactaca-tttttcagcttctaaat 9809087  T

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Target: chr4; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 16583532 - 16583613
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||||||||||  |||||||||||||||||||||||||||    |||||||| ||| || ||||||||||||||||||||    
T  16583532 tttgtaccactctcgaaaatttcagttaaccaaatatatggttgatgtgaccacattttttcagttgcgtgaccactattta 16583613  T

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Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 348 - 475
Target Start/End: Complemental strand, 14351240 - 14351102
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 436  Q
    |||||||||||||  |||| || ||||||||||||||||||| |  |||||||  ||| | ||||||||||||||||||||           ||||||||    
T  14351240 tttgtaccactctcaaaaaatttagttaaccaaatatatggtttgtgtgaccatatttttctagttgcgtgaccactattttgacaaaatttatttggtt 14351141  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    |||||||||||||||||||||||| |  |||||||||||    
T  14351140 aactaagtggaaaaatagtggtcatggacattttagttg 14351102  T

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Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 503
Target Start/End: Complemental strand, 19596971 - 19596795
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt-agttgcgtgaccactat---------- 426  Q
    |||||| | |||||||||  | || |||||||||||||||||||||||||||    |||||||| ||| ||| || ||||||||||||||              
T  19596971 tgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccacattttttttagctgcgtgaccactatgttttcagaa 19596872  T
Q  427 -ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
     ||||||||||||||||||||  ||||||| |||| |||||||||||||| | |||||||| |||||||||| |||||    
T  19596871 tttatttggttaactaagtgggtaaatagtagtcatgcgcattttagttgcgtgaccacat-ttttcagcttctaaat 19596795  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 425 - 473
Target Start/End: Original strand, 8740810 - 8740858
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagt 473  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  8740810 atttatttagttaactaagtagaaaaatagtggtcacgcgcattttagt 8740858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 491
Target Start/End: Complemental strand, 9810951 - 9810784
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccac-gtttatttagttgcgtgaccact------------ 424  Q
    |||| |||| |||||||||||||  ||| ||| |||||||||||||||||||||  ||||||||  ||| |||||||||||||||| |                
T  9810951 tgtaaacctatttgtaccactctagaaattttaagttaaccaaatatatggtctgtgtgaccacattttttttagttgcgtgaccaattttttttttcat 9810852  T
Q  425 -atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 491  Q
     | |||||||||||||||| ||||||||||| |||||||| ||||| ||||| | ||| |||||||||    
T  9810851 aaattatttggttaactaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacatttttt 9810784  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 55666997 - 55666916
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat 430  Q
    ||||||||||| |  ||||||||||||||| |||||||||||||  |||||||| ||| || ||||||||||||| |||||||    
T  55666997 tttgtaccactttcgaaaatttcagttaactaaatatatggtctgtgtgaccacattt-ttcagttgcgtgaccattatttat 55666916  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 33249635 - 33249700
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||  || | ||||||||||||    
T  33249635 atttatttgattaactaggtggaaaaatagtggtcacacgcattttatgtgcgtgaccacattttt 33249700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 55666845 - 55666894
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 474  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  55666845 atttatttgcttaactaagtggaaaaatagtggtcacgaacattttagtt 55666894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 35544439 - 35544515
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||| ||||| ||||||||||||||||| |||| |||| |||||||| | ||||||| ||||||||||| |||||    
T  35544439 atttatttagttaattaagtggaaaaatagtgatcacacgca-tttagttgcgtgaccaca-tttttcagcttctaaat 35544515  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 470
Target Start/End: Complemental strand, 2433801 - 2433756
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcatttt 470  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||    
T  2433801 atttatttggttaacaaagtgaaaaaatagtggtcacgtgcatttt 2433756  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 19596706 - 19596769
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccac 401  Q
    ||||||||  |||||||||||||| ||||| || ||| |||||||||||||||  |||||||||    
T  19596706 tgtacacccctttgtaccactctgaaaaatctctgttgaccaaatatatggtcagcgtgaccac 19596769  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 25007675 - 25007632
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtct 391  Q
    ||||||||| |||  |||||||||||||||||||||||||||||    
T  25007675 tttgtaccattctcgaaaatttcagttaaccaaatatatggtct 25007632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 336 - 522
Target Start/End: Complemental strand, 5855294 - 5855111
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggt 435  Q
    |||||||||  ||||||||||||||| ||||||| ||||||||||||||||||| |  |||||||| |||| ||||||||||||||||||||||||||||    
T  5855294 tatgtacactcttttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttagttagttgcgtgaccactatttatttggt 5855195  T
Q  436 taactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 522  Q
    ||| ||| |||||||||||  ||||  || |||||||||||| |||||||| |||| |||||||||||| | ||||||| |||||||    
T  5855194 taattaaatggaaaaatagacgtca--cgtattttagttgtgtgaccacatatttt-agcttttaaatgttggaaaaattgtggtca 5855111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 348 - 503
Target Start/End: Original strand, 29677017 - 29677181
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 436  Q
    |||||| |||| || ||||||| |||||||||||||||||| ||  |||||||| ||| ||||||||| ||||||||||||           ||||||||    
T  29677017 tttgtagcactttgaaaaattttagttaaccaaatatatggcctgtgtgaccacattt-tttagttgcatgaccactattttttcagaatttatttggtt 29677115  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| |||||    
T  29677116 aactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccaca-tttttcagcttctaaat 29677181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 363 - 518
Target Start/End: Complemental strand, 2996164 - 2996010
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacg 462  Q
    ||||||| | ||||| |||||||| || |  |||||||| ||| |||||||| ||| ||||| |||||||||||||||||| |||||||||| || ||||    
T  2996164 aaaatttaaattaactaaatatatagtatgtgtgaccacatttttttagttgtgtggccactgtttatttggttaactaagcggaaaaatagcggccacg 2996065  T
Q  463 cgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtg 518  Q
    ||||||||| ||| | |||||||| |||||||||| ||||| ||  ||||||||||    
T  2996064 cgcattttatttgcgtgaccacat-ttttcagcttctaaattctgaaaaaatagtg 2996010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 338 - 471
Target Start/End: Complemental strand, 34490376 - 34490231
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact------------a 425  Q
    ||||||||  |||||||||||||| |||||||||||| || |||||||||||||  |||||||| ||| ||||||||||||||||||            |    
T  34490376 tgtacaccactttgtaccactctgaaaaatttcagtttacaaaatatatggtctgtgtgaccacatttttttagttgcgtgaccactagttttttcagaa 34490277  T
Q  426 tttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 471  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||||    
T  34490276 tttatttggttaactaactagaaaaatagtggtcatgcgcatttta 34490231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 338 - 491
Target Start/End: Complemental strand, 5831720 - 5831556
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------at 426  Q
    ||||||||  |||||| ||||||| ||||||||| |||||||||||||||||||  |||||||  ||| ||||||||||||||||||           ||    
T  5831720 tgtacacccctttgtatcactctgaaaaatttcaattaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccactaattttccagaat 5831621  T
Q  427 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 491  Q
    |||||||||||||||||||||||||| ||||| |  ||||||||||||  | ||||| |||||||    
T  5831620 ttatttggttaactaagtggaaaaattgtggtaatacgcattttagttacgggaccatatttttt 5831556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 349 - 471
Target Start/End: Complemental strand, 25238653 - 25238520
Alignment:
Q  349 ttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------atttatttggtta 437  Q
    ||||||||||||| |||||||||||||| |||||||||||| || |||||||| ||| |||||||  ||||| |||           |||||||||||||    
T  25238653 ttgtaccactctgaaaaatttcagttaatcaaatatatggtttctgtgaccacatttttttagttatgtgactactagtttttcagaatttatttggtta 25238554  T
Q  438 actaagtggaaaaatagtggtcacgcgcatttta 471  Q
    ||||||||||||||||||||| |||| |||||||    
T  25238553 actaagtggaaaaatagtggttacgcacatttta 25238520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 475
Target Start/End: Complemental strand, 38952093 - 38951947
Alignment:
Q  340 tacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------attt 428  Q
    ||||||| |||||| ||||||| ||||||||||||||| |||| |||||| |  |||||||  ||| ||||||||| ||||||||           ||||    
T  38952093 tacacctctttgtatcactctgaaaaatttcagttaacaaaatgtatggtatatgtgaccatatttttttagttgcttgaccactatttctccaaaattt 38951994  T
Q  429 atttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    |||||||||||||||| |||||||||||||||  |||||||||||||    
T  38951993 atttggttaactaagtagaaaaatagtggtcagacgcattttagttg 38951947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 425 - 476
Target Start/End: Complemental strand, 42604308 - 42604257
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgt 476  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42604308 atttatttcgttaactaagtggaaaaatagtggtcacgcgcattttagttgt 42604257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 363 - 471
Target Start/End: Original strand, 29167757 - 29167875
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta-----------tttatttggttaactaagtggaaaaa 451  Q
    ||||||||||||||| ||||||||||| |  |||||||| ||| ||||||||| |||||||||           ||||||||||||||||||||||||||    
T  29167757 aaaatttcagttaactaaatatatggtttgtgtgaccacattt-tttagttgcctgaccactagtttttcggaatttatttggttaactaagtggaaaaa 29167855  T
Q  452 tagtggtcacgcgcatttta 471  Q
    ||||||||| ||||||||||    
T  29167856 tagtggtcatgcgcatttta 29167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 365 - 503
Target Start/End: Complemental strand, 9468261 - 9468121
Alignment:
Q  365 aatttcagttaaccaaatatatggtctccgtgaccacgtttattt-agttgcgtgaccactat--ttatttggttaactaagtgg-aaaaatagtggtca 460  Q
    ||||| ||||||||||||||||||| || |||||||  ||| ||| |||||||||| || |||  |||||||||||||||||||| ||||||||| ||||    
T  9468261 aatttaagttaaccaaatatatggt-tctgtgaccatattttttttagttgcgtgatcattatatttatttggttaactaagtggcaaaaatagtagtca 9468163  T
Q  461 cgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |   ||||||||||||| || |||| |||| ||||||||||||    
T  9468162 catacattttagttgtgtgatcaca-ttttacagcttttaaat 9468121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 13350909 - 13350999
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||||||| |  |||| ||||||| || |||||| || | |||||||    
T  13350909 tgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatatggtatgtgtgatcacgttttttcagttgcatggctactattt 13350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 348 - 463
Target Start/End: Complemental strand, 2570086 - 2569960
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 436  Q
    |||||||| ||||| ||||||| |||||||||| |||||||| |  || ||||  ||| || |||||||||||||||||||           ||||||||    
T  2570086 tttgtaccgctctggaaaatttaagttaaccaagtatatggtttgtgttaccatattttttgagttgcgtgaccactatttttctagaatttatttggtt 2569987  T
Q  437 aactaagtggaaaaatagtggtcacgc 463  Q
    |||||||||||||||||||||||||||    
T  2569986 aactaagtggaaaaatagtggtcacgc 2569960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 9929952 - 9929870
Alignment:
Q  346 tttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    ||||||||||| | || ||||||||| ||||| |||||||||||||  |||||||| ||| || | |||||||||||||||||    
T  9929952 tttttgtaccattttgaaaaatttcaattaactaaatatatggtctgtgtgaccacattttttcatttgcgtgaccactattt 9929870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 34364321 - 34364244
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||| |||||||||||||||| |||||| |||||||||  ||||||||||||| ||||||| | ||||||||| |||||    
T  34364321 atttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccaca-tgtttcagcttctaaat 34364244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 34490122 - 34490205
Alignment:
Q  345 ctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||  |||| ||| ||| || |||||  |||||||||||||    
T  34490122 cttttggtaccactatgtaaaatttcagttaactaaatatatggtctgtgtga-cacattttttcagttgtatgaccactattta 34490205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 13351073 - 13351010
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccac 401  Q
    ||||||||  |||||||||||||| ||||||| | |||||||||||||||||||  ||||||||    
T  13351073 tgtacacccctttgtaccactctgaaaaatttaacttaaccaaatatatggtctttgtgaccac 13351010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 38244863 - 38244801
Alignment:
Q  364 aaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat 426  Q
    |||||| ||||| |||||||||||||||  |||||||| ||| || |||||||||||||||||    
T  38244863 aaatttaagttagccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 38244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 38951840 - 38951922
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt-agttgcgtgaccactattta 429  Q
    |||||||||||||  ||||||| |||||||||||||||||||||  |  ||||| ||| ||| || |||||||||||||||||    
T  38951840 tttgtaccactctcgaaaatttaagttaaccaaatatatggtctatgaaaccacatttttttcagctgcgtgaccactattta 38951922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 28499714 - 28499662
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtc 390  Q
    |||||| | |||||||||| |||  ||||||||||||||||||||||||||||    
T  28499714 tgtacatcattttgtaccattctaaaaaatttcagttaaccaaatatatggtc 28499662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 34364169 - 34364221
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgacca 400  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||  |||||||    
T  34364169 tttgtaccactctggaaaatttaagttaactaaatatatggtctgtgtgacca 34364221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 391
Target Start/End: Complemental strand, 29168582 - 29168551
Alignment:
Q  360 tgtaaaatttcagttaaccaaatatatggtct 391  Q
    ||||||||||||||||||||||||||||||||    
T  29168582 tgtaaaatttcagttaaccaaatatatggtct 29168551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 389
Target Start/End: Complemental strand, 29677257 - 29677206
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggt 389  Q
    ||||||||| |||||||||||||  ||||||| |||||| ||||||||||||    
T  29677257 tgtacacctctttgtaccactctcaaaaatttaagttaaacaaatatatggt 29677206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 5855057 - 5855122
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||||||| ||||||||||||||||||  |||||||| | | || ||||| |||||||| ||||    
T  5855057 aaaatttcagctaaccaaatatatggtctgtgtgaccacatattttcagttgtgtgaccacaattt 5855122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 9929662 - 9929703
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggt 389  Q
    |||||||||||||  ||||||| |||||||||||||||||||    
T  9929662 tttgtaccactcttgaaaatttaagttaaccaaatatatggt 9929703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 338 - 512
Target Start/End: Original strand, 27335315 - 27335488
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggtta 437  Q
    ||||||||  ||||||||| |||| ||| ||| ||||||||||  ||||||| |  |||||||| ||| |||||||||||||| ||||||||||||||||    
T  27335315 tgtacacccctttgtaccattctgaaaattttgagttaaccaataatatggtatgtgtgaccacatttttttagttgcgtgacaactatttatttggtta 27335414  T
Q  438 actaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaa 512  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||| |||||||| |||||    
T  27335415 actaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccaca-tttttcagcttctaaatgctggaaaa 27335488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 352 - 503
Target Start/End: Complemental strand, 3786135 - 3785975
Alignment:
Q  352 taccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggttaact 440  Q
    |||||||| | |||||| ||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||||           ||||||||||||    
T  3786135 taccactcagaaaaattccagttaaccaaatatattgtctgtgtgaccacgttt-tttagttgcgtgaccactatttttccataatttatttggttaact 3786037  T
Q  441 aagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||| |||||    
T  3786036 aagtggaaaaa-agtggtcacgcgcattttagttgcgtgaccatattttttcagcttataaat 3785975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 336 - 503
Target Start/End: Complemental strand, 31545806 - 31545629
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact----------- 424  Q
    |||||||| ||||||||| ||||||| |||||||||| ||||| ||||||||||||  |||||||| ||| |||||||| |||||||||               
T  31545806 tatgtacatctttttgtatcactctgaaaaatttcaggtaacctaatatatggtctatgtgaccacatttttttagttgtgtgaccactatttttccaga 31545707  T
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||| ||||||||||| ||||||||||||||| || ||||||||||||| ||||||| ||||||||||| |||||    
T  31545706 atttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccaca-tttttcagcttctaaat 31545629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 18733662 - 18733538
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggtta 437  Q
    ||||||||  ||| ||||| |||| ||||||| ||||||| ||||||||||| |  |||||||| ||| || ||||||||||| ||||||||||||||||    
T  18733662 tgtacacccctttataccattctgaaaaatttaagttaactaaatatatggtatgggtgaccacatttctt-agttgcgtgacaactatttatttggtta 18733564  T
Q  438 actaagtggaaaaatagtggtcacgc 463  Q
    ||||||||||||||||||| ||||||    
T  18733563 actaagtggaaaaatagtgctcacgc 18733538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 377 - 512
Target Start/End: Original strand, 27364960 - 27365094
Alignment:
Q  377 ccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgt 476  Q
    ||||||||||||| | ||||||||| ||  |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| || ||||||| ||     
T  27364960 ccaaatatatggtatgcgtgaccacattattttagttgtgtgacaactatttatttggttaattaagtggaaaaatagtggtcacacgtattttagctgc 27365059  T
Q  477 gcgaccacattttttcagcttttaaatgctagaaaa 512  Q
    | ||| ||| |||||||| || |||||||| |||||    
T  27365060 gtgactaca-tttttcagtttctaaatgctggaaaa 27365094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 348 - 503
Target Start/End: Complemental strand, 3823829 - 3823664
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------atttatttggtt 436  Q
    ||||||| |||| | |||||| ||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||           ||||||||||||    
T  3823829 tttgtactactcagaaaaattccagttaaccaaatatattgtctgtgtgaccacgttt-tttagttgcgtgaccactatttttccataatttatttggtt 3823731  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccaca-ttttttcagcttttaaat 503  Q
    ||||||||||||||| ||||||||| ||||||||||||| | ||||| | |||||||||||| |||||    
T  3823730 aactaagtggaaaaa-agtggtcacacgcattttagttgcgtgaccatatttttttcagcttataaat 3823664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 336 - 487
Target Start/End: Original strand, 26308559 - 26308721
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta---------- 425  Q
    ||||||||| |||||||| |||| || ||||| ||||||||| ||||||||||| |  |||||||| ||  |||||||| ||||||||||              
T  26308559 tatgtacacttttttgtatcactttgaaaaatatcagttaactaaatatatggtttgtgtgaccacattgttttagttgtgtgaccactaattttccaga 26308658  T
Q  426 -tttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatt 487  Q
     ||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||    
T  26308659 atttatttggttaagtaagtggaaaaatagtggtcacgcgcattttaattgcgtgaccacatt 26308721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 394 - 514
Target Start/End: Original strand, 27326016 - 27326135
Alignment:
Q  394 gtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttca 493  Q
    |||||||| ||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||  | |||||||||| | ||||||||||||| |    
T  27326016 gtgaccacatttttttagttgcgtgacaactatttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacatttttt-a 27326114  T
Q  494 gcttttaaatgctagaaaaat 514  Q
    | || |||||||| |||||||    
T  27326115 gtttctaaatgctggaaaaat 27326135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 394 - 514
Target Start/End: Original strand, 27332253 - 27332372
Alignment:
Q  394 gtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttca 493  Q
    |||||||| ||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||  | |||||||||| | ||||||||||||| |    
T  27332253 gtgaccacatttttttagttgcgtgacaactatttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacatttttt-a 27332351  T
Q  494 gcttttaaatgctagaaaaat 514  Q
    | || |||||||| |||||||    
T  27332352 gtttctaaatgctggaaaaat 27332372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 338 - 503
Target Start/End: Complemental strand, 22432518 - 22432343
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt--------- 428  Q
    |||||||| ||||||| |||| || ||||||| ||| || ||||||||||||||  ||||| || ||| ||||||||| ||||||||||||             
T  22432518 tgtacacccttttgtagcactttgaaaaatttgagtaaatcaaatatatggtctgtgtgactacatttttttagttgcatgaccactattttttcataat 22432419  T
Q  429 --atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
      ||||||| ||||| ||||||||||||||| ||| |||||||||||||   |||||||| ||||||||||||||||    
T  22432418 ttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacat-ttttcagcttttaaat 22432343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 42637975 - 42638052
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||| ||||||||||| |||||    
T  42637975 atttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccaca-tttttcagcttctaaat 42638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 338 - 490
Target Start/End: Complemental strand, 19280385 - 19280223
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta-----------t 426  Q
    ||||||||  |||||||||||||| ||| ||| |||||| ||||||||||||||  ||||| || ||| || ||| | ||||||||||           |    
T  19280385 tgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatatggtctgtgtgacaacattttttaagtggtgtgaccactaatttttcaaaat 19280286  T
Q  427 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||    
T  19280285 ttatttggttaactaagtggaaaa-tagtggtcacgcgaattttagttgcgtgaccacattttt 19280223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 356 - 461
Target Start/End: Complemental strand, 33488406 - 33488301
Alignment:
Q  356 actctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagt 455  Q
    |||||| ||||||| ||||||| ||||||||||| |   ||||| | | | |||||||||| ||||||||||||||||||||| ||||||||||||| ||    
T  33488406 actctgaaaaatttaagttaactaaatatatggtatgtatgaccgcatatttttagttgcgcgaccactatttatttggttaattaagtggaaaaattgt 33488307  T
Q  456 ggtcac 461  Q
    ||||||    
T  33488306 ggtcac 33488301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 338 - 430
Target Start/End: Original strand, 3823577 - 3823669
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat 430  Q
    ||||||||  |||||||||||||  |||||||||||||||||| ||||||||||  |||||||| ||| ||  ||||||||||||||||||||    
T  3823577 tgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtctgtgtgaccacattttttctgttgcgtgaccactatttat 3823669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 339 - 490
Target Start/End: Complemental strand, 5342063 - 5341901
Alignment:
Q  339 gtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat-----------t 427  Q
    |||||||  ||||||| |||||| |||||||||||||| | ||||||||||||  |||||||| ||| |||||||| || |||| |||           |    
T  5342063 gtacacccctttgtacgactctgaaaaatttcagttaatcgaatatatggtctgtgtgaccacatttttttagttgtgtaaccattatgttttcagaatt 5341964  T
Q  428 tatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    |||||||||||||||||||||||||||||||||   | |||||||||||  ||||||||||||    
T  5341963 tatttggttaactaagtggaaaaatagtggtcatatgtattttagttgtatgaccacattttt 5341901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 4169124 - 4169201
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||| |  |||||| ||||||||||| |||||    
T  4169124 atttatttggttaactaaatggaaaaatagtggtcacgcacattttagttgcgttaccaca-tttttcagcttctaaat 4169201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 13358111 - 13358188
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||| | ||||||||||| |||||    
T  13358111 atttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccata-tttttcagcttctaaat 13358188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 27707763 - 27707697
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 491  Q
    ||||||||||||||  ||||| |||||||||||||| || |||||||||||||||||||||||||||    
T  27707763 atttatttggttaatcaagtgaaaaaatagtggtcatgcacattttagttgtgcgaccacatttttt 27707697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 1705691 - 1705739
Alignment:
Q  427 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1705691 ttatttggttaactaaggggaaaaatagtggtcacgcgcattttagttg 1705739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 11501360 - 11501310
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  11501360 atttatttggttaactaattggaaaaatagtggtcacgcacattttagttg 11501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 19624395 - 19624345
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  19624395 atttatgtggttaactaagtggaaaaatagtggtcacgtgcattttagttg 19624345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 42481390 - 42481313
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||||||||| |||||||| ||||||||  ||||||||||||| ||||| | |||||||| ||||||||    
T  42481390 atttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccata-tttttcagtttttaaat 42481313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 9710903 - 9710850
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggt 389  Q
    ||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  9710903 tatgtacacccctttgtaccactctgaaaaatttcagttaaccaaatatatggt 9710850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 44080346 - 44080282
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||    
T  44080346 atttttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacattttt 44080282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 338 - 430
Target Start/End: Original strand, 3785888 - 3785980
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat 430  Q
    ||||||||  |||||||||||||  |||||||||||||||||| | ||||||||  |||||||| ||| ||  ||| ||||||||||||||||    
T  3785888 tgtacacccctttgtaccactctcgaaaatttcagttaaccaattttatggtctgtgtgaccacattttttctgttacgtgaccactatttat 3785980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 358 - 492
Target Start/End: Complemental strand, 39126333 - 39126187
Alignment:
Q  358 tctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-------------atttatttggttaactaagt 444  Q
    |||| ||||||| ||||||||||||||||| |||  ||||| || ||| |||||||||||||| |||             ||||||||||||||||||||    
T  39126333 tctgaaaaatttaagttaaccaaatatatgatctgtgtgacaacatttttttagttgcgtgactactatttttttttaaaatttatttggttaactaagt 39126234  T
Q  445 ggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttc 492  Q
    |||||||||||| || ||||| ||||||||| |  |||||||||||||    
T  39126233 ggaaaaatagtgatcgcgcgc-ttttagttgcgtaaccacattttttc 39126187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 27079315 - 27079381
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 491  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||| |  | |||||||||||||    
T  27079315 atttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacatttttt 27079381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 27085112 - 27085178
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 491  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||| |  | |||||||||||||    
T  27085112 atttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacatttttt 27085178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 42638136 - 42638048
Alignment:
Q  341 acacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||| ||| ||| |||||  ||||||||||||||| ||||||||||| |   ||||||| ||| || ||||||||||||||||||||    
T  42638136 acacctctttatacaactctcgaaaatttcagttaactaaatatatggtatatatgaccacattttttcagttgcgtgaccactattta 42638048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 9710743 - 9710778
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtca 460  Q
    ||||||||||||||||||||||||||||||||||||    
T  9710743 atttatttggttaactaagtggaaaaatagtggtca 9710778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 34627318 - 34627396
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||||||| |||||||||| |||| ||  | |||||||||| | |||||||||||| | | ||||||||    
T  34627318 atttatttggttaactaaatggaaaaataatggttacatgtattttagttgcgtgaccacatttttccgggttttaaat 34627396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 44080192 - 44080274
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatt-tagttgcgtgaccactattta 429  Q
    |||||||||||||| | ||||||||||||||||||||||  |||  |||||||  ||| ||  ||||||||||||||||||||    
T  44080192 tttgtaccactctgaacaatttcagttaaccaaatatataatctgtgtgaccatattttttgcagttgcgtgaccactattta 44080274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 19280152 - 19280215
Alignment:
Q  366 atttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||| |||||||||||||||||||||  |||||||| ||| || || |||||||||||| ||||    
T  19280152 attttagttaaccaaatatatggtctgagtgaccacattttttcagatgcgtgaccactgttta 19280215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 503
Target Start/End: Complemental strand, 11509969 - 11509916
Alignment:
Q  449 aaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||| |||||||||||||||||||| | |||||||| |||||||||| |||||    
T  11509969 aaataggggtcacgcgcattttagttgcgtgaccacat-ttttcagcttctaaat 11509916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 11501244 - 11501297
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccac 401  Q
    |||||||||||||| ||| |||||  ||||||||||||||||||  ||||||||    
T  11501244 tttgtaccactctgaaaattttcaaataaccaaatatatggtctgtgtgaccac 11501297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 13359052 - 13359011
Alignment:
Q  350 tgtaccactctgtaaaatttcagttaaccaaatatatggtct 391  Q
    |||||||||||| ||||||||||||||  |||||||||||||    
T  13359052 tgtaccactctggaaaatttcagttaattaaatatatggtct 13359011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 27040760 - 27040683
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta 425  Q
    ||||||| |||||  |||||||| |||||||||||||||| |||  |||| |||  || || ||||||||||||||||    
T  27040760 tttgtactactctagaaaatttcggttaaccaaatatatgatctgtgtgatcacaatttttcagttgcgtgaccacta 27040683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 27079453 - 27079388
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||||| ||||||||||||||||||||  ||||||||  || || |||||| ||||||| ||||    
T  27079453 aaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattt 27079388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 27085250 - 27085185
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||||| ||||||||||||||||||||  ||||||||  || || |||||| ||||||| ||||    
T  27085250 aaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattt 27085185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 372 - 522
Target Start/End: Complemental strand, 6000 - 5851
Alignment:
Q  372 gttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 471  Q
    ||||| ||||||||||||    |||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||    
T  6000 gttaatcaaatatatggtgcgtgtgaccacatttatttagttgcgtgaccactatttatttggttaattaagtgcaaaaatagtggtcacgcgtatttta 5901  T
Q  472 gttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 522  Q
    |||| |  ||||||  |||||||||||||||||||| ||||||||||||||    
T  5900 gttgcgacaccaca-cttttcagcttttaaatgctaaaaaaatagtggtca 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 348 - 522
Target Start/End: Complemental strand, 15233395 - 15233222
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtgga 447  Q
    |||||||||||||| ||||||| ||||||  |||||||| || |  |||||||| ||||| ||| ||| |||||||||||||||||||||| |||||| |    
T  15233395 tttgtaccactctgaaaaattttagttaattaaatatatagtttgtgtgaccacatttatctaggtgcttgaccactatttatttggttaattaagtgaa 15233296  T
Q  448 aaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 522  Q
    ||||||||||||| |||||||||||||| | ||||||  ||||||| |||||||||||| |||||||||||||||    
T  15233295 aaaatagtggtcatgcgcattttagttgcgtgaccac-gtttttcaacttttaaatgctggaaaaatagtggtca 15233222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 336 - 503
Target Start/End: Original strand, 15714614 - 15714791
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact----------- 424  Q
    ||||||||| |||||||||||||||| ||||||||||||| | ||||||||| | |  |||||||| |||  |||||||||||||||||               
T  15714614 tatgtacacatttttgtaccactctgaaaaatttcagttagctaaatatatgatttatgtgaccacattttgttagttgcgtgaccactattttttcgaa 15714713  T
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||  | ||||| | |||||||||||||||||    
T  15714714 atttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccata-tttttcagcttttaaat 15714791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 348 - 503
Target Start/End: Original strand, 38606759 - 38606924
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat-----------ttatttggtt 436  Q
    |||||||||||||| ||||||||||||||| ||||||||||| |  |||||||  ||| ||||| ||||||||||||||           ||||||||||    
T  38606759 tttgtaccactctgaaaaatttcagttaactaaatatatggtatgtgtgaccatatttttttagctgcgtgaccactatgtttccagaatttatttggtt 38606858  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||||||||| |||||||| |||| | ||||||| ||||||||||| |||||    
T  38606859 aactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccaca-tttttcagcttctaaat 38606924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 341 - 516
Target Start/End: Complemental strand, 28700324 - 28700149
Alignment:
Q  341 acacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaact 440  Q
    |||||| ||| |||||||||  ||||| | ||||||||||||||||| ||    ||||||| |||  ||||||||||||| | |||||||||||||||||    
T  28700324 acacctctttataccactctagaaaatctaagttaaccaaatatatgttcagtatgaccacattttgttagttgcgtgacaattatttatttggttaact 28700225  T
Q  441 aagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatag 516  Q
    |||| |||||||| |||||||  |||||||| ||||| || | |||||||| || |||||||| || |||||||||    
T  28700224 aagtagaaaaataatggtcacttgcattttaattgtgtgatcgcatttttttagtttttaaattctggaaaaatag 28700149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 427 - 490
Target Start/End: Original strand, 29367076 - 29367139
Alignment:
Q  427 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  29367076 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacattttt 29367139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 338 - 474
Target Start/End: Complemental strand, 5573968 - 5573821
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatg-gtctccgtgaccacgtttatttagttgcgtgaccactattt-------- 428  Q
    |||||||  ||||||||||||||  || |||||||||||| ||||||||  ||||  |||||||| ||| |||| |||||||||||||||||            
T  5573968 tgtacactcttttgtaccactctaaaagatttcagttaactaaatatatatgtctttgtgaccacatttttttaattgcgtgaccactatttttcaaaat 5573869  T
Q  429 --atttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 474  Q
      |||||||||||||||||||||||||||||||||| |||||||||||    
T  5573868 ttatttggttaactaagtggaaaaatagtggtcacgtgcattttagtt 5573821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 5321981 - 5322031
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5321981 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 5322031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 336 - 429
Target Start/End: Original strand, 31596719 - 31596812
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    ||||||||||| ||||||||||| || |||||| ||||||| |||||||||||| |  |||||||| ||| || |||||||| |||||||||||    
T  31596719 tatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatatggtatgtgtgaccacattttttcagttgcgttaccactattta 31596812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 1240920 - 1240969
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 474  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  1240920 atttatttggttaactaagtgggaaaatagtggtcacgcacattttagtt 1240969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 1251659 - 1251568
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    ||||||||  |||||||||||||  ||||||||||||||| ||||||||| | |  | |||||| ||| || ||||||||||||||||||||    
T  1251659 tgtacacccatttgtaccactctcgaaaatttcagttaactaaatatatgatttgtgagaccacattttttcagttgcgtgaccactattta 1251568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 31273745 - 31273654
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||| ||||||||||||||||||  ||||||||| |||| ||||||||||||||  ||| |||| | | || |||||||||||| |||||||    
T  31273745 tgtatacctttttgtaccactctcgaaaatttcaattaatcaaatatatggtctatgtggccacatgttttcagttgcgtgacccctattta 31273654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 38607011 - 38606920
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    ||||||||  ||||||| |||||  ||||||||||||||| | ||||||||| | ||||||||| ||| || |||||||| |||||||||||    
T  38607011 tgtacacccctttgtacaactctccaaaatttcagttaactacatatatggtttgcgtgaccacattttttcagttgcgttaccactattta 38606920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 26493356 - 26493432
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||| |||||||| |||||||||||| |||||||||| |||||||| | ||||||| ||||||||||| |||||    
T  26493356 atttatttgattaactaaatggaaaaatagttgtcacgcgca-tttagttgcgtgaccaca-tttttcagcttctaaat 26493432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 1251496 - 1251545
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 474  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  1251496 atttatttggttaactaagtgggaaaatagtggtcgcgcacattttagtt 1251545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 24576243 - 24576180
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccac 401  Q
    ||||||||  |||||||||||||  ||||||||| |||||||||||||||||||  ||||||||    
T  24576243 tgtacacccctttgtaccactctcgaaaatttcaattaaccaaatatatggtctgtgtgaccac 24576180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 338 - 429
Target Start/End: Original strand, 33286143 - 33286234
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    ||||||||  |||||||| ||||  |||| || | ||||||||||||||||||| ||||||||| ||| || | ||||||||||||| ||||    
T  33286143 tgtacacccatttgtacccctctaaaaaaatttaattaaccaaatatatggtctgcgtgaccacattttttcaattgcgtgaccacttttta 33286234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 429
Target Start/End: Original strand, 5573699 - 5573797
Alignment:
Q  331 ctttgtatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||| |||||||| ||||||| || |||  || |||||||||||||||||||||| | |  ||||| || ||| || | ||||||||||||||||||    
T  5573699 ctttgtgtgtacacccttttgtatcattctcgaacatttcagttaaccaaatatatgatatatgtgactacattttttcaattgcgtgaccactattta 5573797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 15233144 - 15233233
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||| || || |||||| |||| |||||||||||||| ||||||||||||||| | || ||| ||| || |||| ||||||||||||||    
T  15233144 tgtacatctcttcgtaccaatctgaaaaatttcagttaatcaaatatatggtctctgcgatcacattt-ttcagttacgtgaccactattt 15233233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 31596884 - 31596820
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    |||||||||||||| ||||||||||||||||| | || |||| |||||||||  ||||||||||||    
T  31596884 atttatttggttaattaagtggaaaaatagtgattacacgca-tttagttgtctgaccacattttt 31596820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 491
Target Start/End: Complemental strand, 32959631 - 32959584
Alignment:
Q  444 tggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 491  Q
    |||||||||||||||||| | ||||||||||||| ||||| |||||||    
T  32959631 tggaaaaatagtggtcacacacattttagttgtgtgaccatatttttt 32959584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 6809885 - 6809819
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 491  Q
    |||||||||||||| ||| ||||||||||||||||||  | |||||||| | |  ||||||||||||    
T  6809885 atttatttggttaattaaatggaaaaatagtggtcacatgtattttagtcgagtaaccacatttttt 6809819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 5322135 - 5322054
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||| ||||||  ||||||||| |||||||||||||||||||  |||| ||| ||| || | |||||||| || ||||||    
T  5322135 tttgtatcactctcaaaaatttcaattaaccaaatatatggtctgtgtgatcacattttttcaattgcgtgatcattattta 5322054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 6295947 - 6296004
Alignment:
Q  371 agttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||||||||||||| || |  |||||||||||| ||||||| |||| |||||||||    
T  6295947 agttaaccaaatatatagtttatgtgaccacgtttttttagttacgtggccactattt 6296004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 340 - 522
Target Start/End: Complemental strand, 32964937 - 32964757
Alignment:
Q  340 tacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaac 439  Q
    |||||| ||||||| ||||||  ||||||| ||||||| | |||||||||||  |||||||| | | ||||||||||||||||||||||||| ||||||     
T  32964937 tacacccttttgtatcactctaaaaaatttaagttaactatatatatggtctgtgtgaccacatatttttagttgcgtgaccactatttattaggttaat 32964838  T
Q  440 taagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 522  Q
    ||||||||||||||||||||||| |||||||||||    ||||| | ||||||||||| |||||||| | |||||||||||||    
T  32964837 taagtggaaaaatagtggtcacgtgcattttagttacatgaccata-tttttcagcttctaaatgct-ggaaaatagtggtca 32964757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 336 - 503
Target Start/End: Original strand, 28804906 - 28805085
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt---agttgcgtgaccactat------ 426  Q
    |||||||||| |||||||||| |||  |||||||||||||||||||||||||||||  |||||||| ||| |||   ||||| |||||||||||          
T  28804906 tatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccacattttttttttagttgtgtgaccactatatttcc 28805005  T
Q  427 -----ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
         ||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||| |||||    
T  28805006 ataatttatttggttaactaagtggaaaaatagtggtc-cgcgcattttggttgtgtgaccaca-tttttcagcttctaaat 28805085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 363 - 503
Target Start/End: Complemental strand, 31303615 - 31303466
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat-----------ttatttggttaactaagtggaaaaa 451  Q
    ||||||||||||||| ||||||||||| |  |||||||| ||| ||||||||||||||||||||           |||||||||||||||||||||||||    
T  31303615 aaaatttcagttaacaaaatatatggtatgtgtgaccacattt-tttagttgcgtgaccactatgtttccagaatttatttggttaactaagtggaaaaa 31303517  T
Q  452 tagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||| |||||||||||   |||||||| |||||||||| |||||    
T  31303516 tagtggtcacgcacattttagttgcatgaccacat-ttttcagcttctaaat 31303466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 352 - 503
Target Start/End: Complemental strand, 21589797 - 21589636
Alignment:
Q  352 taccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat-----------ttatttggttaact 440  Q
    |||||||||  ||||||||||||| |||||||||||||||  |||||||| ||| ||||||||| ||||||||||           ||||||| |||| |    
T  21589797 taccactctaaaaaatttcagttatccaaatatatggtctgtgtgaccacatttttttagttgcatgaccactatttttccagaacttatttgattaatt 21589698  T
Q  441 aagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||||| |||||||||||||   ||||||| ||||||||||| |||||    
T  21589697 aagtggaaaaatagtggtcacacgcattttagttgcatgaccaca-tttttcagcttctaaat 21589636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 348 - 490
Target Start/End: Complemental strand, 4291004 - 4290852
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta-----------tttatttggtt 436  Q
    ||||||| ||| || ||||||||||||||||||||| ||| |||   ||||||||||| |||||||||||||||||||           |||||||||||    
T  4291004 tttgtactactttgaaaaatttcagttaaccaaataaatgatctgtatgaccacgtttttttagttgcgtgaccactagtttttcagaatttatttggtt 4290905  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    ||||||||||||||||||||||||||| ||  ||||||| | ||||||||||||    
T  4290904 aactaagtggaaaaatagtggtcacgcaca-cttagttgcgtgaccacattttt 4290852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 21548629 - 21548465
Alignment:
Q  349 ttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtta 437  Q
    |||||||| |||  ||||||||||||||| |||||||||||||  |||| ||  ||| ||||||||||||||||||||||           |||||||||    
T  21548629 ttgtaccattctaaaaaatttcagttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgaccactatttttccagaatttatttggtta 21548530  T
Q  438 actaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||| |||||| |||||||||  ||||| | |||||||| ||||||||||||||||    
T  21548529 actaagtggaaaaacagtggttacgcgcattcgagttgcgtgaccacat-ttttcagcttttaaat 21548465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 407 - 522
Target Start/End: Original strand, 46943743 - 46943858
Alignment:
Q  407 tttagttgcgtgaccactatttatttggttaactaagtg--gaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatg 504  Q
    ||||||||| |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| | || ||||  |||||||||| |||||     
T  46943743 tttagttgcatgaccactatttatttggttaactaagtgaaaaaaaatagtggtcacgcgcattttagttgcgtgatcaca--ttttcagcttctaaatt 46943840  T
Q  505 ctagaaaaatagtggtca 522  Q
    || ||| || ||||||||    
T  46943841 cttgaacaacagtggtca 46943858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 348 - 489
Target Start/End: Complemental strand, 18313004 - 18312852
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 436  Q
    |||||||||||||| |||||||||| |||||||||||||||| |  ||| | |  ||| ||||||||||||||||||||||           ||| ||||    
T  18313004 tttgtaccactctgaaaaatttcagctaaccaaatatatggtttgtgtggctaaatttttttagttgcgtgaccactatttttcaagaatttattaggtt 18312905  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttt 489  Q
    |||||||||||||||||||||||||  |||||||||||| | || ||||||||    
T  18312904 aactaagtggaaaaatagtggtcacatgcattttagttgcgtgagcacatttt 18312852  T

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Target: chr7; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 20556856 - 20556779
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||    
T  20556856 atttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacat-ttttcagcttctaaat 20556779  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 31303389 - 31303470
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||| ||||||| ||||||||||| ||||||||| ||||||| ||||||||| ||| || | ||||||||||||||||||    
T  31303389 tttgtatcactctgaaaaatttcagtcaaccaaatacatggtctgcgtgaccacattttttcaattgcgtgaccactattta 31303470  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 22033238 - 22033158
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    ||||||||| |||| ||||||| |||||||||||||||||||||  |||||||  ||| || |||||||||||||||||||    
T  22033238 tttgtaccattctgaaaaattttagttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccactattt 22033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 22740678 - 22740755
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||||||||||||| || ||||||  |||||||||| | ||||| | |||||||||||||||||    
T  22740678 atttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccata-tttttcagcttttaaat 22740755  T

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Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 15958490 - 15958434
Alignment:
Q  345 ctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccac 401  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  15958490 ctttctgtaccactctgtaaaatttcagttaactaaatatatggtctgtgtgaccac 15958434  T

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Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 5083739 - 5083803
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||||||||||| ||||||||||||||  |||||||| ||| ||||||| ||||||||||||||    
T  5083739 aaaatttcagttaatcaaatatatggtctttgtgaccacattt-tttagttacgtgaccactattt 5083803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 15958259 - 15958324
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    ||||||| ||||||||||||||||||||   |||||||| ||| |||||||| |||||||||||||    
T  15958259 aaaatttaagttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactattt 15958324  T

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Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 18312763 - 18312844
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||||||||||  ||||||||| |||| ||||||||||||||| |||||||| | | || |||||||| || ||||||||    
T  18312763 tttgtaccactctcgaaaatttcaattaatcaaatatatggtctctgtgaccacatattttcagttgcgtcactactattta 18312844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 28805196 - 28805116
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||| ||||||| ||||||| ||||||||||||||||||| |  |||||||| ||| || |||||||||| ||| ||||    
T  28805196 tttgtatcactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacattttttcagttgcgtgatcacgattt 28805116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 471
Target Start/End: Complemental strand, 5174956 - 5174910
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 471  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  5174956 atttatttgattaactaagtgtaaaaatagtggtcacgcacatttta 5174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 20556717 - 20556783
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    ||||||||||||||||||||||||||||   |||||||  ||| || ||||| ||||||||||||||    
T  20556717 aaaatttcagttaaccaaatatatggtcggtgtgaccatattttttcagttgtgtgaccactattta 20556783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 22032996 - 22033037
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggt 389  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  22032996 tttgtaccactctttaaaatttaagttaaccaaatatatggt 22033037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 476
Target Start/End: Original strand, 27523506 - 27523557
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgt 476  Q
    |||||||||||||| |||||||||||||||| |||| || ||||||| ||||    
T  27523506 atttatttggttaattaagtggaaaaatagtagtcaagcacattttaattgt 27523557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 5083811 - 5083875
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    |||||||| |||||| |||| |||||||||||||||| |||| |||||||| | ||||| ||||||    
T  5083811 atttatttcgttaacaaagttgaaaaatagtggtcacccgca-tttagttgcgtgaccatattttt 5083875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 338 - 503
Target Start/End: Original strand, 1400695 - 1400870
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------at 426  Q
    |||||||| |||||||||| |||| ||||||||||||||||||||||||||| |  |||||||| ||| || |||||||||||||||           ||    
T  1400695 tgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgaccactatttttccataat 1400794  T
Q  427 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||| |||||    
T  1400795 ttatttggttaactaagtggaaaaatagtgatcacgcgcatttttgttgtgtgaccaca-tttttcagcttctaaat 1400870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 28527244 - 28527391
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------at 426  Q
    ||||||||  ||||||||||| || |||||||||| ||||||||||||||||||  |||||||| ||| ||||||||||||||||||           ||    
T  28527244 tgtacacccctttgtaccactttgaaaaatttcagctaaccaaatatatggtctgtgtgaccacatttttttagttgcgtgaccactatttttccagaat 28527343  T
Q  427 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 474  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  28527344 ttatttggttaactaattggaaaaatagtggtcacacgcatgttagtt 28527391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 348 - 503
Target Start/End: Original strand, 30905982 - 30906147
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat-----------ttatttggtt 436  Q
    |||||| || |||| ||| ||| ||||||||| |||||| ||||  |||||||| |||||||||||| |||||||||||           ||||||| ||    
T  30905982 tttgtaacattctgaaaatttttagttaaccagatatattgtctgtgtgaccacatttatttagttgtgtgaccactatgtttccataatttatttgctt 30906081  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||    
T  30906082 aactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccaca-tttttcagcatttaaat 30906147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 30906234 - 30906143
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||  || || |||| |||||||||||||||    
T  30906234 tgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggtctgcgtgaccaccatttttcagtttcgtgaccactattta 30906143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 336 - 490
Target Start/End: Complemental strand, 33667505 - 33667340
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatt-------- 427  Q
    |||||||||  ||||||||||||||| ||||||| ||||||||||||||||||| |   ||| ||| ||| || ||||||||||||||||||            
T  33667505 tatgtacactcttttgtaccactctgaaaaattttagttaaccaaatatatggtatgtatgaacacattttttaagttgcgtgaccactattttttcaga 33667406  T
Q  428 ---tatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
       ||||||||||||||||||||||||||||||| |||| ||||||| ||| | ||||||||||||    
T  33667405 atatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacattttt 33667340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 338 - 475
Target Start/End: Complemental strand, 34175296 - 34175159
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggtta 437  Q
    ||||||||  ||||||||| |||  ||||||| |||||| |||||||||  | |  ||||| || ||  ||||||||||||| |||||||||||||||||    
T  34175296 tgtacacccatttgtaccattctaaaaaatttaagttaatcaaatatataatttgtgtgacaacattgttttagttgcgtgatcactatttatttggtta 34175197  T
Q  438 actaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    |||||||||||||||||  ||||| | |||||||||||    
T  34175196 actaagtggaaaaatagcagtcacacacattttagttg 34175159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 425 - 504
Target Start/End: Complemental strand, 45306056 - 45305978
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatg 504  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||| | | ||||| ||||||||||||||||||    
T  45306056 atttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccaca-tttttcagcttttaaatg 45305978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 43900618 - 43900541
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||||||| | |||||||| |||||||||| |||||    
T  43900618 atttatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacat-ttttcagcttctaaat 43900541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 41212484 - 41212411
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgacca 422  Q
    |||||||||||||| ||||||| |||||||||||||||||||||  |||||||| ||| |||||||| |||||||    
T  41212484 tttgtaccactctgaaaaatttaagttaaccaaatatatggtctgtgtgaccacattt-tttagttgtgtgacca 41212411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 347 - 429
Target Start/End: Original strand, 43900463 - 43900545
Alignment:
Q  347 ttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    ||||||||||||||  |||||||||| |||| |||||||||||||  |||| ||| ||| || ||||| ||||||||||||||    
T  43900463 ttttgtaccactctcgaaaatttcaggtaactaaatatatggtctgtgtgatcacattttttcagttgtgtgaccactattta 43900545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 423
Target Start/End: Original strand, 45305903 - 45305978
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccac 423  Q
    |||||||||||||  |||||||||||||| ||||||||| ||||   ||||||  ||| || ||||||||||||||    
T  45305903 tttgtaccactctaaaaaatttcagttaatcaaatatatagtctgtatgaccatattttttcagttgcgtgaccac 45305978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 338 - 503
Target Start/End: Complemental strand, 9068593 - 9068419
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat------- 430  Q
    |||||||| ||||||||||||||| ||||||| |||||| |||||||||||| |  |||||||| ||| |||||||||||||||||||||| |           
T  9068593 tgtacacccttttgtaccactctgaaaaattttagttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactatttttccagaac 9068494  T
Q  431 ---ttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
       || ||| ||||||||||||||||||  ||||||||||||||| |||| ||||||| |||||||||||||||||    
T  9068493 ttatttgtttactaagtggaaaaatagtaatcacgcgcattttagatgtgtgaccaca-tttttcagcttttaaat 9068419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 348 - 475
Target Start/End: Original strand, 10304632 - 10304769
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------atttatttggtt 436  Q
    |||||||||||||  |||||||||||||||||||||||||||||  ||||||||  || |||| |||||||||||||           ||||||||||||    
T  10304632 tttgtaccactctaaaaaatttcagttaaccaaatatatggtctgtgtgaccacactt-tttaattgcgtgaccactttttttccagaatttatttggtt 10304730  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttg 475  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  10304731 aactaagtgaaaaaatagtggtcacgcgcattttagttg 10304769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 33815035 - 33815112
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||||||||| |||||    
T  33815035 atttatttggttaactaagtggaaaaatggtggtcacgcgcattttagttgcgtgaccaca-tttttcagcttctaaat 33815112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 348 - 520
Target Start/End: Complemental strand, 2835140 - 2834958
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 436  Q
    |||||||||||||| ||||||| |||||||||||||||   |||  |||||||| ||| |||||||| || ||||||||||           |||| |||    
T  2835140 tttgtaccactctgaaaaatttaagttaaccaaatataccatctgtgtgaccacatttttttagttgtgtaaccactatttttccataatttatttagtt 2835041  T
Q  437 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggt 520  Q
    | ||||||||||||||| |||||||||| ||||||||||   ||||| | ||||||||||||||||| ||| ||||||||||||    
T  2835040 agctaagtggaaaaataatggtcacgcgtattttagttgcatgaccata-tttttcagcttttaaatactaaaaaaatagtggt 2834958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 503
Target Start/End: Original strand, 138650 - 138811
Alignment:
Q  352 taccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggttaact 440  Q
    |||||||||  |||| || |||||||||||||||||||||  ||| |||| |||  |||||||||||||||||||||           |||||||| |||    
T  138650 taccactctaaaaaaatttagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgact 138749  T
Q  441 aagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||| ||| || |||||||| | ||||||| ||||||||||| |||||    
T  138750 aagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccaca-tttttcagcttctaaat 138811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 503
Target Start/End: Original strand, 146671 - 146832
Alignment:
Q  352 taccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggttaact 440  Q
    |||||||||  |||| || |||||||||||||||||||||  ||| |||| |||  |||||||||||||||||||||           |||||||| |||    
T  146671 taccactctaaaaaaatttagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgact 146770  T
Q  441 aagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||| ||| || |||||||| | ||||||| ||||||||||| |||||    
T  146771 aagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccaca-tttttcagcttctaaat 146832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 3222521 - 3222444
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| | |||| || ||||||||| |||||||    
T  3222521 atttatttggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgca-tttttcagcatttaaat 3222444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 429
Target Start/End: Original strand, 22608287 - 22608377
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    ||||||||  |||||||||||||  ||||||| |||||||||||||||||||||  ||||| || ||| || ||||||||||||||||||||    
T  22608287 tgtacacccctttgtaccactctcaaaaattttagttaaccaaatatatggtctgtgtgactacattt-ttcagttgcgtgaccactattta 22608377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 7915781 - 7915696
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccac 423  Q
    |||||||| | || |||||||||| |||||||||||||| ||||||||| ||||  ||||||||  || |||||||||||||||||    
T  7915781 tgtacaccctcttttaccactctgaaaaatttcagttaatcaaatatatcgtctgtgtgaccacaattttttagttgcgtgaccac 7915696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 30056057 - 30056138
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccac-gtttatttagttgcgtgaccactattt 428  Q
    ||||||| |||||  |||||||||||||||||||||||||||||  ||||||||  ||| ||| ||||||||||||||||||    
T  30056057 tttgtacaactctaaaaaatttcagttaaccaaatatatggtctatgtgaccacatttttttttgttgcgtgaccactattt 30056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 429
Target Start/End: Original strand, 23595080 - 23595171
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||||| ||||||| ||||||  ||||||| ||||||| |||||||||||||  |||||||  ||| |||||||| ||||| ||||||||    
T  23595080 tgtacacccttttgtatcactctcgaaaatttaagttaactaaatatatggtctgtgtgaccatatttttttagttgtgtgacaactattta 23595171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 2430626 - 2430664
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgc 463  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2430626 atttatttggttaactaagtggaaaaatagtggtcacgc 2430664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 3222382 - 3222448
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||||||  |||||||||||||||| || |||||||| ||| || ||||||||||||||||||||    
T  3222382 aaaatttcaaataaccaaatatatggtgtctgtgaccacattttttcagttgcgtgaccactattta 3222448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 3620779 - 3620844
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 490  Q
    ||||||||||||||||||||| |||||||||||||||    |||||||||||| || |||||||||    
T  3620779 atttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacattttt 3620844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 9474718 - 9474673
Alignment:
Q  426 tttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 471  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  9474718 tttatttggttaactaagtgaaaaaatagtggtcacacgcatttta 9474673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 18980461 - 18980401
Alignment:
Q  341 acacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccac 401  Q
    ||||||||||||||||||||| ||||| | ||||||| |||||||||||||  ||||||||    
T  18980461 acacctttttgtaccactctgcaaaatctaagttaactaaatatatggtctatgtgaccac 18980401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 2365704 - 2365649
Alignment:
Q  367 tttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgacca 422  Q
    ||||||||||||||||||||||| | ||||||||| ||| || |||||||||||||    
T  2365704 tttcagttaaccaaatatatggtatgcgtgaccacattttttcagttgcgtgacca 2365649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 425
Target Start/End: Complemental strand, 24386385 - 24386312
Alignment:
Q  352 taccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta 425  Q
    |||||| ||| ||||||| |||||||||||||||||||||  |||||||| | | ||| ||||||||| |||||    
T  24386385 taccacgctgaaaaatttaagttaaccaaatatatggtctgtgtgaccacatattttttgttgcgtgatcacta 24386312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 2430706 - 2430650
Alignment:
Q  372 gttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 428  Q
    |||||||||||||||||| |  |||||||| ||| || |||||||||||||||||||    
T  2430706 gttaaccaaatatatggtttgtgtgaccacattttttcagttgcgtgaccactattt 2430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 11108102 - 11108154
Alignment:
Q  349 ttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccac 401  Q
    |||||| |||||| ||||||||| |||||||||||||||||||  ||||||||    
T  11108102 ttgtactactctgaaaaatttcaattaaccaaatatatggtctgtgtgaccac 11108154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 7706785 - 7706876
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt-agttgcgtgaccactattt 428  Q
    |||||| | |||||||||| |||| ||||||| ||||||   |||||||||| |  |||||||| ||| ||| |||||||||||||||||||    
T  7706785 tgtacatccttttgtaccattctgaaaaattttagttaatataatatatggtttgtgtgaccacatttttttcagttgcgtgaccactattt 7706876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 23595234 - 23595195
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcg 464  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  23595234 atttattttgttaactaagtggaaaaatagtggccacgcg 23595195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 429
Target Start/End: Complemental strand, 10304858 - 10304792
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    ||||||| ||| ||| |||||||||||||  |||||||| ||| || |||||||||| |||||||||    
T  10304858 aaaattttagtgaactaaatatatggtctgtgtgaccacattttttcagttgcgtgatcactattta 10304792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 429
Target Start/End: Complemental strand, 33815174 - 33815108
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||| |||| ||||| |||||||| ||||  |||||||| ||| || ||||||||||||||||||||    
T  33815174 aaaacttcaattaactaaatatatagtctgtgtgaccacattttttcagttgcgtgaccactattta 33815108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 23595331 - 23595262
Alignment:
Q  336 tatgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgttt 405  Q
    |||||||||| |||||||  |||||  ||||||||| |||||||||||||| ||||  |||||||| |||    
T  23595331 tatgtacacccttttgtattactctaaaaaatttcaattaaccaaatatatagtctgtgtgaccacattt 23595262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 394 - 514
Target Start/End: Complemental strand, 87143 - 87024
Alignment:
Q  394 gtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttca 493  Q
    |||||||| ||| |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| | |||||||||| | |||||||| ||||||    
T  87143 gtgaccacatttttttagttgcgtgacaaatatttatttggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacat-ttttca 87045  T
Q  494 gcttttaaatgctagaaaaat 514  Q
    | || |||||||| |||||||    
T  87044 gtttctaaatgctggaaaaat 87024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 355 - 518
Target Start/End: Complemental strand, 112306 - 112143
Alignment:
Q  355 cactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt-agttgcgtgaccactatttatttggttaactaagtggaaaaata 453  Q
    ||||||| ||| ||| |||||| ||||||||| || |  || ||||| ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||    
T  112306 cactctgaaaattttaagttaatcaaatatatagtttgtgtaaccacattttttttagttgcgtaaccactatttatttagttaactaagtggaaaaata 112207  T
Q  454 gtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtg 518  Q
    ||||||||| |||||||| ||| | ||||||  ||||||||||| ||||| || ||| |||||||    
T  112206 gtggtcacgtgcattttaattgcgtgaccac-gtttttcagcttctaaattctcgaacaatagtg 112143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 346 - 503
Target Start/End: Original strand, 137 - 305
Alignment:
Q  346 tttttgtaccactct-gtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttg 433  Q
    ||||||||||||||| | |||||||||||||||||||||||||| ||  |||| ||| ||  ||||||||||||||||||| ||           |||||    
T  137 tttttgtaccactcttgaaaaatttcagttaaccaaatatatggactgtgtgatcacattgttttagttgcgtgaccactaatttttcaaaaattatttg 236  T
Q  434 gttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 503  Q
    | ||| ||||||||||||||||||||| |||||||||||||| | ||||||| ||||||||||| |||||    
T  237 gataagtaagtggaaaaatagtggtcatgcgcattttagttgcgtgaccaca-tttttcagcttctaaat 305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 392 - 301
Alignment:
Q  338 tgtacacctttttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||| || |||||||||||||| ||| |||||||||||||||||||||||||  ||| ||||  || || ||||||||||||||||||||    
T  392 tgtacatctctttgtaccactctgaaaattttcagttaaccaaatatatggtctgtgtggccacactttttcagttgcgtgaccactattta 301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 10634 - 10700
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 491  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||    
T  10634 atttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacatttttt 10700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 10788 - 10707
Alignment:
Q  348 tttgtaccactctgtaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 429  Q
    |||||||||||||  ||||||||| |||||||||||||||||||  ||||| |  ||| || |||||| |||||||||||||    
T  10788 tttgtaccactctagaaaatttcaattaaccaaatatatggtctaggtgactatattttttaagttgcatgaccactattta 10707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 24040 - 24086
Alignment:
Q  425 atttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 471  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  24040 atttatttggtaaaataagtggaaaaatagtggtcacgcgcatttta 24086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 21638 - 21575
Alignment:
Q  363 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat 426  Q
    ||||| |||||||||| ||||||||||||  |||||||| ||| || |||||||||||||||||    
T  21638 aaaatctcagttaaccgaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 21575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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