View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5861-Insertion-5 (Length: 585)
Name: NF5861-Insertion-5
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5861-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 9 - 557
Target Start/End: Complemental strand, 38025138 - 38024590
Alignment:
| Q |
9 |
tgtttggccttcttgtcatccttaaatttggtagcaacaaatgaagaagaagagaaattctttgcttgagacattgatctaacacggtttttaaggtgtt |
108 |
Q |
| |
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||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
38025138 |
tgtttggacttcttctcatccttaaatttggtagcaagaaatgaagaagaagagaaattctttgcttgagacattgatttagcacggtttttaaggtgtt |
38025039 |
T |
|
| Q |
109 |
gttgagcttgtcttaaagcatagttccacctacagataccagcttgatctttcaaagcttccacaactccaacacttgcagccaccatccaggctttgct |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38025038 |
gttgagcttgtcttaaagcatagttccacctacagataccagcttgatctttcaaagcttccacaactccaacacttgcagccaccatccaggctttgct |
38024939 |
T |
|
| Q |
209 |
tgttgctgttgcacgattcatgatttttggttgttagtttttggattggatatcaaaatatagaagaagtagatagtgttgtttggtaaatatgaaaatg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024938 |
tgttgctgttgcacgattcatgatttttggttgttagtttttggattggatatcaaaatatagaagaagtagatagtgttgtttggtaaatatgaaaatg |
38024839 |
T |
|
| Q |
309 |
agattgttgattgatggagtagagaggagtgatggctaatattatttatatggattgaaataagataccatgagctagctagataaataacacccttggt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024838 |
agattgttgattgatggagtagagaggagtgatggctaatcttatttatatggattgaaataagataccatgagctagctagataaataacacccttggt |
38024739 |
T |
|
| Q |
409 |
tttggagaaaccataggctatatctactggttttggaaattaaataaaacaaaataatctaccttggaccactttgtcattacattcactccatccaact |
508 |
Q |
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| T |
38024738 |
tttggagaaaccataggctatatctactggttttggaaattaagtaaaacaaaataatctaccttggaccactttgtcattacattcactccatccaact |
38024639 |
T |
|
| Q |
509 |
catcttaatgggtccttatcttaaacgtgcctaaaaaatttgttttcac |
557 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
38024638 |
catcttaatgggtccttatcttaaacgtgtctaaaaaaattgttttcac |
38024590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 556
Target Start/End: Complemental strand, 38031878 - 38031348
Alignment:
| Q |
9 |
tgtttggccttcttgtcatccttaaatttggtagcaacaaatgaagaagaagagaaattctttgcttgagacattgatctaacacggtttttaaggtgtt |
108 |
Q |
| |
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|||||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38031878 |
tgtttggccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattctttgcttgagaaattgatctaacacggtttttaaggtgtt |
38031779 |
T |
|
| Q |
109 |
gttgagcttgtcttaaagcatagttccacctacagataccagcttgatctttcaaagcttccacaactccaacacttgcagccaccatccaggctttgct |
208 |
Q |
| |
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||||||||||||||||| |||||||||| || || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
38031778 |
gttgagcttgtcttaaaccatagttccatctgcaaataccagcttggtctttcaaagcctccacaactccaacacttgcagccaccatccatgctttgct |
38031679 |
T |
|
| Q |
209 |
tgttgctgttgcacgattcatgatttttggttgttagtttttggattggatatcaaaatatagaagaagtagatagtgttgtttggtaaatatgaaaatg |
308 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||| |||||| |
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| T |
38031678 |
tgttgctgttgcacgattcatgattt-------------------ttggatatcaaaattt---agaagtagacagtgttgtttggtaaataagaaaata |
38031601 |
T |
|
| Q |
309 |
agattgttga-ttgatggagtagagaggagtgatggctaatattatttatatggattgaaataagataccatgagctagctagata---aataacaccct |
404 |
Q |
| |
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|||||||||| |||||| ||||||||||||| ||| || |||||||| | |||||||||||||||||||||||||||||||| ||||| || || |
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| T |
38031600 |
agattgttgatttgatgaagtagagaggagtcatgttcgatcttatttat-tatattgaaataagataccatgagctagctagataactaataatacact |
38031502 |
T |
|
| Q |
405 |
tggttttggagaaaccataggctatatctactggttttggaaattaaataaaacaaaataatctaccttggaccactttgtcattacat--tcactccat |
502 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| |
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| T |
38031501 |
tggttttggagaaaccataggctatgtctactggttttggaaattaaataaaacaaaataatctaccttggaccactttgtcattacgtgatcactgcat |
38031402 |
T |
|
| Q |
503 |
ccaactcatcttaatgggtccttatcttaaacgtgcctaaaaaatttgttttca |
556 |
Q |
| |
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|||||||| || |||||| |||||| ||||||||||||||||| || |||||| |
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| T |
38031401 |
ccaactcactttgatgggttcttatcctaaacgtgcctaaaaaaattattttca |
38031348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 38003627 - 38003398
Alignment:
| Q |
9 |
tgtttggccttcttgtcatccttaaatttggtagcaacaaatgaagaagaagagaaattctttgcttgagacattgatctaacacggtttttaaggtgtt |
108 |
Q |
| |
|
||||| |||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38003627 |
tgttttgccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattctttgcttgagaaattgatctaacacggtttttaaggtgtt |
38003528 |
T |
|
| Q |
109 |
gttgagcttgtcttaaagcatagttccacctacagataccagcttgatctttcaaagcttccacaactccaacacttgcagccaccatccaggctttgct |
208 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38003527 |
gttgagcttgtcttaaagcataattccacctacaaataccagcttgatctttcaaagcttccacaactccaacacttgcagccaccatccatgctttgct |
38003428 |
T |
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| Q |
209 |
tgttgctgttgcacgattcatgatttttgg |
238 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
38003427 |
tgttgctgttgcacgattcatgatttttgg |
38003398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 38003381 - 38003336
Alignment:
| Q |
278 |
tagatagtgttgtttggtaaatatgaaaatgagattgttgattgat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
38003381 |
tagatagtgttgtttggtaaatatgaaagtgagtttgttgattgat |
38003336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 38033834 - 38033799
Alignment:
| Q |
151 |
cttgatctttcaaagcttccacaactccaacacttg |
186 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |
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|
| T |
38033834 |
cttgatctttcaaagcctccacaactccaacacttg |
38033799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 16005418 - 16005291
Alignment:
| Q |
66 |
ttctttgcttgagacattgatctaacacggtttttaaggtgttgttgagcttgtcttaaagcatagttccacctacagataccagcttgatctttcaaag |
165 |
Q |
| |
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|||||||||||||| | ||||||||| |||||| | |||||||||||| | | |||||||| ||||| ||||| || || ||| |||||||| | |
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| T |
16005418 |
ttctttgcttgagagaaagatctaacattgtttttgacatgttgttgagctaatttcaaagcataattccatctacatatgcctaattggtctttcaagg |
16005319 |
T |
|
| Q |
166 |
cttccacaactccaacacttgcagccac |
193 |
Q |
| |
|
|||||||||| |||||||| || ||||| |
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|
| T |
16005318 |
cttccacaacaccaacactagctgccac |
16005291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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