View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5861-Insertion-8 (Length: 380)

Name: NF5861-Insertion-8
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5861-Insertion-8
NF5861-Insertion-8
[»] scaffold0041 (1 HSPs)
scaffold0041 (9-380)||(63282-63671)
[»] chr7 (1 HSPs)
chr7 (9-380)||(40909423-40909812)


Alignment Details
Target: scaffold0041 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 63671 - 63282
Alignment:
Q  9 ataaggtagcatagcaatattgtgatcagtcacaaatccctagggtgagtgtattctt-gttttcctttttctgaaaaatgtttagacaaagataagagg 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  63671 ataaggtagcatagccatattgtgatcagtcacaaatccctagggggagtgtattctttgttttcctttttctgaaaaatgtttagacaaagataagagg 63572  T
Q  108 tgcggaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaaaagaacacgac 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  63571 tgcgaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaaaagaacacgac 63472  T
Q  208 aaagactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtccc----------cataacatagc-------tcta 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||       ||||    
T  63471 aaagactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtccccataccataccataacatagctgatagatcta 63372  T
Q  291 ttaatgccttgtgctacggtggtaaccctccctgatcatattccattattcaatggggttattacacgtgtcatcccactaggactctgt 380  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  63371 ttaatgccttgtgctacggtggtaaccctccctgatcatattcctttattcaatggggttattacacgtgtcatcccactaggactctgt 63282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 380
Target Start/End: Original strand, 40909423 - 40909812
Alignment:
Q  9 ataaggtagcatagcaatattgtgatcagtcacaaatccctagggtgagtgtattctt-gttttcctttttctgaaaaatgtttagacaaagataagagg 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40909423 ataaggtagcatagccatattgtgatcagtcacaaatccctagggggagtgtattctttgttttcctttttctgaaaaatgtttagacaaagataagagg 40909522  T
Q  108 tgcggaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaaaagaacacgac 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40909523 tgcgaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaaaagaacacgac 40909622  T
Q  208 aaagactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtcc----------ccataacatagc-------tcta 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||       ||||    
T  40909623 aaagactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtccccataccataccataacatagctgatagatcta 40909722  T
Q  291 ttaatgccttgtgctacggtggtaaccctccctgatcatattccattattcaatggggttattacacgtgtcatcccactaggactctgt 380  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40909723 ttaatgccttgtgctacggtggtaaccctccctgatcatattcctttattcaatggggttattacacgtgtcatcccactaggactctgt 40909812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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