View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5861-Insertion-9 (Length: 342)
Name: NF5861-Insertion-9
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5861-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 332
Target Start/End: Complemental strand, 28526856 - 28526532
Alignment:
| Q |
8 |
aatatttatggacaacaattaattttctaacttttgagaaataaattgacacaattttaaattcatcaatgatcgaaggtaatttatgcaaaagatttaa |
107 |
Q |
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| T |
28526856 |
aatatttatggacaacaattaattttcaaccttttgaaaaataaattgacacaattttaaattcatcaatgatcgaaggtaatttatgcaaaagatttaa |
28526757 |
T |
|
| Q |
108 |
nnnnnnnnattaggatagtataaatcaaatgtaattaactatcatctctttttaatatttgtaatttataatttgatacattaaattgttcgacaaatat |
207 |
Q |
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| T |
28526756 |
ttttttttattaggatagtataaatcaaatgtaattaactatcatctctttttaatatttgtaatttataatttgatacattaaattgttcgacaaatat |
28526657 |
T |
|
| Q |
208 |
tctgattaaccaaaggaagaactctatgtagcttctccttcaaatttggtctgtctctgaatatttgccacaaaaagcaatatttgagatagaattgaag |
307 |
Q |
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| T |
28526656 |
tctgattaaccaaaggaagaactctatgtagcttctccttcaaatttggtctgtctctgaatatttgccccaaaaagcaaaatttgagatagaattgaag |
28526557 |
T |
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| Q |
308 |
attatctaattcgtgactgtaagta |
332 |
Q |
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| T |
28526556 |
attatctaattcgtgactgtaagta |
28526532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 40999818 - 40999777
Alignment:
| Q |
24 |
aattaattttctaacttttgagaaataaattgacacaatttt |
65 |
Q |
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| T |
40999818 |
aattaattttcaacattttgagaaataaattgacacaatttt |
40999777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 41728936 - 41728976
Alignment:
| Q |
24 |
aattaattttctaacttttgagaaataaattgacacaattt |
64 |
Q |
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|||| |||||| || |||||||||||||||||||||||||| |
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| T |
41728936 |
aatttattttcaaatttttgagaaataaattgacacaattt |
41728976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 6035432 - 6035472
Alignment:
| Q |
25 |
attaattttctaacttttgagaaataaattgacacaatttt |
65 |
Q |
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| T |
6035432 |
attaatttttaaaattttgagaaataaattgacacaatttt |
6035472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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