View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5861_high_3 (Length: 342)
Name: NF5861_high_3
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5861_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 4074936 - 4075253
Alignment:
| Q |
10 |
aagaatattttggatctaactactgtcgccattacttttatgtcattcagcttgaaactaggtctaattttttgtttaataaggtaaacaagtatcattg |
109 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4074936 |
aagaatattttggatccaactactgtcgccattacttttatgtcattcagcttgaaactaggtctaattttttgtttaataaggtaaacaagtatcattg |
4075035 |
T |
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| Q |
110 |
tgatgaaaaagatacatgacattnnnnnnnnnncactagcatatgcatgttttttaaggattagggataacaatattctttacacttcaacttccctcac |
209 |
Q |
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| T |
4075036 |
tgatgaaaaagatacatgacattaaaaaaaaaacactagcatatgcatgttttttaaggattagggataacaatattctttacacttcaacttccctcac |
4075135 |
T |
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| Q |
210 |
ctcagtcaacatcaagagaaaacaagataacaaaccaaaccaaacataaatgtaacgtattgtacttaaagttttcaatatcaaatgtttgtcatctatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
4075136 |
ctcagtcaacatcaagagaaaacaagataacaaaacaaaccaaagataaatgtaacatattttacttcaagttttcaatatcaaatgtttgtcatctatg |
4075235 |
T |
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| Q |
310 |
gaaaatataggcataaag |
327 |
Q |
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|||||||||||||||||| |
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| T |
4075236 |
gaaaatataggcataaag |
4075253 |
T |
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