View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5861_low_2 (Length: 370)
Name: NF5861_low_2
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5861_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 50460306 - 50460654
Alignment:
| Q |
14 |
cactttctaatggggatcaatttgaacagggtcactattgttgatattgagcttcgaattttcttcatagtcttggtcttttttaagatttcaacttcag |
113 |
Q |
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| T |
50460306 |
cactttctaatggggatcaatttgaacagggtcactattgttgatattgagcttcgaattttcttcatagtcttggtcttttttaagatttcaacttcag |
50460405 |
T |
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| Q |
114 |
acaatctaccagcaaattttgtatttggagattctctagttgatgtaggaaacaataattacattatttctctctcaaaggctaattttttgcctaatgg |
213 |
Q |
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| T |
50460406 |
acaatctacctgcaaattttgtatttggagattctctagttgatgtaggaaacaataattacattatttctctctcaaaggctaattttttgcctaatgg |
50460505 |
T |
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| Q |
214 |
tatcgattttggaagaccaacagggagattcaccaatggaagaaccatagttgacatcattggtaagattttattagtaataaaattatttcccttattt |
313 |
Q |
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| T |
50460506 |
tatcgattttggaagaccaacagggagattcaccaatggaagaaccatagttgacatcattggtaagattttattagtaataaaattatttcccttattt |
50460605 |
T |
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| Q |
314 |
cattctacttgatagtcactatttttatataacgagtcttatattcttg |
362 |
Q |
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| T |
50460606 |
cattctacttgatagtcactatttttatataacgagtcttatattcttg |
50460654 |
T |
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