View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5861_low_4 (Length: 340)
Name: NF5861_low_4
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5861_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 43383486 - 43383301
Alignment:
| Q |
1 |
agtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaattaggaggagggttaatgcctctccattcacgct |
100 |
Q |
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| T |
43383486 |
agtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaattaggtggagggttaatgcctctccattcacgct |
43383387 |
T |
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| Q |
101 |
caggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgttc |
186 |
Q |
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| T |
43383386 |
caggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgttc |
43383301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 25870210 - 25870023
Alignment:
| Q |
1 |
agtaagagcaaagaagcagcaccttcctgttcttctggagtcacaa---caagttgttgtcttctgaaattaggaggagggttaatgcctctccattcac |
97 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25870210 |
agtaaaagcaaagaagcagcaccttcctgttcttctggagtcacaagttgttgttgttgtcttctgaaattaggaggagggttaatgcctctccattgac |
25870111 |
T |
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| Q |
98 |
gctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgtt |
185 |
Q |
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| T |
25870110 |
gctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgtt |
25870023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 214 - 332
Target Start/End: Complemental strand, 43383282 - 43383170
Alignment:
| Q |
214 |
tccccacccaattccttacgcttcttcttaccagtaacattaacagaatcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
313 |
Q |
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| T |
43383282 |
tccccacccaattccttactcttcttcttaccagtaacagta------tcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
43383189 |
T |
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| Q |
314 |
tatctccacctttcatctc |
332 |
Q |
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| T |
43383188 |
tatctccacctttcatctc |
43383170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 25869970 - 25869933
Alignment:
| Q |
295 |
tgatcatcggaccaatttttatctccacctttcatctc |
332 |
Q |
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| T |
25869970 |
tgatcatcggaccaatttttatctccacctttcatctc |
25869933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 25870009 - 25869981
Alignment:
| Q |
214 |
tccccacccaattccttacgcttcttctt |
242 |
Q |
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| T |
25870009 |
tccccacccaattccttacgcttcttctt |
25869981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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