View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5861_low_6 (Length: 243)
Name: NF5861_low_6
Description: NF5861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5861_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 411716 - 411508
Alignment:
| Q |
20 |
cgatgttcttccaacgctcataaagctcacattcacatttttctcgcctaatatgtttccgacagtaccaatcatcccaggttgatcaatctgtctgcac |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
411716 |
cgatgttcttccaacactcataaagctcacattcacatttttctcgcctaatatgtttccgacagtaccaatcatcccaggttgatcaatctgtctgcac |
411617 |
T |
|
| Q |
120 |
aaaatcagattcccttctaagctcacatccacagcaaaagatcccacacatgtaaggtgtggtgtaccgtacttcacttttccatcaatgcttatctgac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
411616 |
aaaatcagattcccttctaagctcacatccacagcaaaagatcccacacatgtaaggtgtggtgtaccgtacttcacttttccatcaatgcttatctgac |
411517 |
T |
|
| Q |
220 |
cagtctctg |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
411516 |
cagtctctg |
411508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University