View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862-Insertion-1 (Length: 1020)
Name: NF5862-Insertion-1
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 267 - 941
Target Start/End: Complemental strand, 38666735 - 38666068
Alignment:
| Q |
267 |
acaaatatttcatatcaacatgtttgctagctagtaactaagcacgccttgcattgatatgaactaacgttaacacaccgatttttattacaacttgctt |
366 |
Q |
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| T |
38666735 |
acaaatatttcatatcaacatgtttgctagctagtaactaagcacgccttgcattgatatgaacttacgttaacacaccgatttttattacaacttgctt |
38666636 |
T |
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| Q |
367 |
cccggtacccacagttaactttatgttcatttcatttcatttcaagagttgtagattgtcaaagaaattattaaaatggtatagtaataaaattgtacat |
466 |
Q |
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| T |
38666635 |
cccggtacccacatttaactttatgttcatttcatttcatttcaagagttgta----------------------atggtatagtaataaaattgtacat |
38666558 |
T |
|
| Q |
467 |
gtgtgaaacatttactttatcttgtcgtgcatcacaatggatagaaaaagtagtatttgttttcnnnnnnnagatgtttttattcatgagaaataaagta |
566 |
Q |
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| T |
38666557 |
gtgtgaaacatttactttatcttgtcgtgcatcacaatggatagaaaaagtagtatttgttttctttttttagatgtttttattcatgagaaataaagta |
38666458 |
T |
|
| Q |
567 |
tattag--------ggcagggacaaacatggtagtgggtagatgagaatcaagatgccctttggagtggcctagattccttctgcttccttttcatgtta |
658 |
Q |
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| T |
38666457 |
tattagtatattagggcaggggcaaacatggtagtgggtagatgagaatcaagatgccctttggggtggcctagattccttctgcttccttttaatgtta |
38666358 |
T |
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| Q |
659 |
gctttgctatggacaaccttccacaccccatattcatgcgacactctccccttccctcctcaatatatattgtagcaataggagctacatatatgccctt |
758 |
Q |
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| T |
38666357 |
gctttgctatggacaaccttccacaccccatattcatgcgacactctccccttccctcctcaatatatattgtagcaataggagctacatatatgccctt |
38666258 |
T |
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| Q |
759 |
tcactttatcctaaactgccaaaaatttaacataagtgctataccacgtatatcgtcaccaaattgatccttgtgaaatatcaccaacctaatatttaag |
858 |
Q |
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| T |
38666257 |
tcactttatcctaaactgccaaaaatttaacataagtgctataccacgtatatcgtcaccaaattgatccttgtgaaatatcaccaacctaatattttgg |
38666158 |
T |
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| Q |
859 |
ct-aagatcctaactgatcattgtgaaac-aatttac-acttccttataccat-agactaatt-aagattcaa--ttatccttgtgaaaa |
941 |
Q |
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| T |
38666157 |
ctaaagatcctaactgatcattgttaaacaaatttacaacttccttataccataagactaattaaagattcaaattaatccttgtgaaaa |
38666068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 38666973 - 38666787
Alignment:
| Q |
29 |
aatgacaacgattaatatgttaattgtcatgtagtannnnnnnnctccttaccataacttaaatattgcacatttaactttatcaacgctttannnnnnn |
128 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
38666973 |
aatgacaacgattaatatgttaattgtcatgtagtatttttttcttccttaccataactta--tattgtacatttaactttatcaacgctttattttctt |
38666876 |
T |
|
| Q |
129 |
aactcaaatcagatgaactacttaaccccataaactttaaaccatgtttgcttgttagtaattaagcacactttgcaaacaaatgcgtt |
217 |
Q |
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| T |
38666875 |
aactcaaatcagatgaactacttaaccccataaactttaaacgatgtttgcttgttagtaattaagcacactttgcaaacaaatgcgtt |
38666787 |
T |
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