View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5862-Insertion-11 (Length: 262)
Name: NF5862-Insertion-11
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862-Insertion-11 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 5159498 - 5159751
Alignment:
| Q |
9 |
caaagcatggctatttgtggacccaacaagaagaaagcacatagccaatacctaccaaccaaactaatcacattatcctcaacagctctttcacaaccac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159498 |
caaagcatggctatttgtggacccaacaagaagaaagcacatagccaataactaccaaccaaactaatcacattatcctcaacagctctttcacaaccac |
5159597 |
T |
|
| Q |
109 |
aaaccaaaccagaaaaaacatcactcattctcagactacacaaaggtcacaaacagaggggnnnnnnnctacaaattctgaagaatagagagagcataaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5159598 |
aaaccaaaccagaaaaaacatcactcattctcagactacacaaaggtcacaaacagaggggaaaaaaactacaaattctgaagaatagagagagcataaa |
5159697 |
T |
|
| Q |
209 |
aaagacgaggtatcttgttcttgtgataagataatatgctcttacgtggcaaca |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159698 |
aaagacgaggtatcttgttcttgtgataagataatatgctcttacgtggcaaca |
5159751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University