View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862-Insertion-2 (Length: 980)
Name: NF5862-Insertion-2
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 850; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 850; E-Value: 0
Query Start/End: Original strand, 8 - 980
Target Start/End: Original strand, 4512588 - 4513564
Alignment:
| Q |
8 |
acttagctcgtacatgtagaaactaaattctcattttctgtctagattactcttataattcttctatctctgcagggtttgattgtgagttctcgcaaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512588 |
acttagctcgtacatgtagaaactaaattctcattttctgtctagattactcttataattcttctatctctgcagggtttgattgtgagttctcgcaaag |
4512687 |
T |
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| Q |
108 |
aatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512688 |
aatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtcc |
4512787 |
T |
|
| Q |
208 |
actnnnnnnnnnnnnnnnnnnntcggagagaaaagaagtttcaaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattg |
307 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512788 |
actcacacacaagcacacacactcggagagaaaagaagtttcaaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattg |
4512887 |
T |
|
| Q |
308 |
gaacatcagggcaagggagaacttttactcaggatgttgttgaagcgatggcctctttaaataaggtactttgtcaacctattcatcatcccaatatgca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512888 |
gaacatcagggcaagggagaacttttactcaggatgttgttgaagcgatggcctctttaaataaggtactttgtcaacctattcatcatcccaatatgca |
4512987 |
T |
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| Q |
408 |
atttgatgcttgtgttatctgaatccatgcgccatatggtaatgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgta |
507 |
Q |
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| T |
4512988 |
atttgatgcttatgttatctgaatccatgtgccatatggtaatgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgta |
4513087 |
T |
|
| Q |
508 |
ctgcagaagaagcttatacgtggactcaggtaatgtgaaaacacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgata |
607 |
Q |
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| T |
4513088 |
ctgcagaagaagcttatacgtggactcaggtaatgtgaaaacacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgata |
4513187 |
T |
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| Q |
608 |
acgaagaatgactcttctcattcgttttttattcattgtccgtttgtgtttctgtcagggacatgccatttttgctagcggtagtccattttccccagtt |
707 |
Q |
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| T |
4513188 |
acgaagaatgactcttctcattcgttttttattcattgtccgtttgtgtttctgtcagggacatgccatttttgctagcggtagtccattttccccagtt |
4513287 |
T |
|
| Q |
708 |
gaatatgaaggaaaagtgtttgtacctggccaggtctgaactcaatggaaagtttataaatgtcagaagnnnnnnnntccgtatcaaatgaattctaatt |
807 |
Q |
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| T |
4513288 |
gaatatgaaggaaaagtgtttgtacctggccaggtctgaactcaatggaaagtttataaatgtcagaagaaaaaaaatccgtatcaaatgaattctaatt |
4513387 |
T |
|
| Q |
808 |
taatttttcttgttaatcaggcc-ataacscatacatttttcctggatttggtctcgg-ttaataatgtctggtacaatccgaatgcacgatggcttgct |
905 |
Q |
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|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4513388 |
taattttttttgttaatcaggccaataacgcatacatttttcctggatttggtctcggtttaataatgtctggtacaatccgaatgcacgatggcttgct |
4513487 |
T |
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| Q |
906 |
tctggcagcttgtaagtgcttcagagattcaaacattcacttcaat-atgatgcttgattgacatat-actacctct |
980 |
Q |
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| T |
4513488 |
tctggcagcttgtaagtgcttcagagattcaaacattcacttcaataatgatgcttgattgacatataactacctct |
4513564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 43206699 - 43206652
Alignment:
| Q |
110 |
tcacttcaacatttcaagaagccatgggctcatgaacacgaacctgtt |
157 |
Q |
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| T |
43206699 |
tcacttcaacacttcaagaagccttgggctcatgaacacgagcctgtt |
43206652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 7e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 447 - 541
Target Start/End: Complemental strand, 43432373 - 43432279
Alignment:
| Q |
447 |
taatgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtactgcagaagaagcttatacgtggactcaggtaat |
541 |
Q |
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| T |
43432373 |
taatgcttgtagaaacctattattctttctctttccaacccaacgtcacagtccgaatgtactgctgaagaagcttatacgtggacacaggtaat |
43432279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 43432742 - 43432638
Alignment:
| Q |
81 |
agggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaacttgtagatgctgttaa |
180 |
Q |
| |
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|||| |||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || ||| | ||||||||||| |
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| T |
43432742 |
agggattgattgtcagttcccgtaaagaatcactccaacatttcaagaagccgtgggctcatgaacacgaacctgttaaaaaccttcttgatgctgttaa |
43432643 |
T |
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| Q |
181 |
agtac |
185 |
Q |
| |
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| T |
43432642 |
tgtac |
43432638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 662 - 744
Target Start/End: Complemental strand, 43432203 - 43432121
Alignment:
| Q |
662 |
tcagggacatgccatttttgctagcggtagtccattttccccagttgaatatgaaggaaaagtgtttgtacctggccaggtct |
744 |
Q |
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|||||||| ||| || ||||| || || || |||||||| || ||||||||| | || ||||||||||| ||||||||||||| |
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| T |
43432203 |
tcagggacgtgcgatctttgcaagtgggagcccattttcgccggttgaatataaggggaaagtgtttgtgcctggccaggtct |
43432121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 276 - 394
Target Start/End: Complemental strand, 43432557 - 43432439
Alignment:
| Q |
276 |
ttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaacttttactcaggatgttgttgaagcgatggcctctttaaataaggta |
375 |
Q |
| |
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||||||| ||||||||||||||||| | ||||||||||| || ||||| || | ||||| | || || ||||| |||||||||||| | || ||||| |
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| T |
43432557 |
ttttcagaaaattaagccaacagtgcttattggaacatcgggacaaggaagtgcgtttaccaaagaggtggttgaggcgatggcctctattaacgaggta |
43432458 |
T |
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| Q |
376 |
ctttgtcaacctattcatc |
394 |
Q |
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||| ||||| ||| ||||| |
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| T |
43432457 |
cttagtcaatctactcatc |
43432439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 3533801 - 3533733
Alignment:
| Q |
248 |
tcaaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagg |
317 |
Q |
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|||||||| ||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||| |
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| T |
3533801 |
tcaaatttctcatatttgaatgttttctttt-cggcaaattaagccaacagtgttgattggaatatcagg |
3533733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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