View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5862-Insertion-3 (Length: 895)
Name: NF5862-Insertion-3
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5862-Insertion-3 |
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| [»] chr6 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 489 - 895
Target Start/End: Original strand, 11450955 - 11451363
Alignment:
| Q |
489 |
ttgatgaactaagagtgaggtttatcatcatggtgaaatttggaccttccaacattggaaaagctactttcaactacctagtctgagacactatgcaagt |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||| |
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| T |
11450955 |
ttgatgaactaagagtgaggtttatcatcatggtgaaatttggtccttccaacattggaaaagctaccttgaactacctcatctgagacactgtgcaagt |
11451054 |
T |
|
| Q |
589 |
gtaaggcaaagtgaaaatatgtgttggctttaagagtatgttgttgttgtgtggtatgcattacaataggctcttgacgtttatgattagtttcatcttg |
688 |
Q |
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||| ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11451055 |
gtagggcaaagtgaaaatatgtgttggctttaagaatttattgttgttgtgtggtatgcattacaataggctcttgacgtttatgattagtttcatcttg |
11451154 |
T |
|
| Q |
689 |
aacaacaaggtcttcaaaggatttgcatgtaccaacaacatatccttcgtttcttcaagcaattttacaattgttggtagagatgtcaaaatgggccaag |
788 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11451155 |
aacaacagggtcttcaaaggatttgcatgtaccaacaacatatccttcgtttttacaagcaattttacaattgttggtagagatgtcaaaattggccaag |
11451254 |
T |
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| Q |
789 |
cccaccggactggcccttcggccgtctattttaatgtgggccggaccgtaa-aaaagtatgaaaaagtgatcctatctttt-gggccagcccatcgggcc |
886 |
Q |
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| |||| | ||||||||||||||||||||||| | |||| |||||||||| ||||| |||||||| ||| | |||||| ||| |||||||||||||| |
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| T |
11451255 |
ctcaccaggatggcccttcggccgtctattttagtatgggtcggaccgtaagaaaagcatgaaaaatcaatcttgtcttttagggtcagcccatcgggcc |
11451354 |
T |
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| Q |
887 |
tgtatttta |
895 |
Q |
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||||||||| |
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| T |
11451355 |
tgtatttta |
11451363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 178 - 462
Target Start/End: Original strand, 11450675 - 11450962
Alignment:
| Q |
178 |
tacttaccattaagtgttgcatattattttgacctctttaaatatgtcaactgttacttttattccctctnnnnnnnttctttaaatattaatccccta- |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||| | |
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| T |
11450675 |
tacttaccattaagtgttgcatattattttgacctctttaaatatgtcaactgttacttttatttcctctaaaaaatttctttgaataaaaatcccccag |
11450774 |
T |
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| Q |
277 |
aacttttctatctctaaatttggttcata---ttaactccaattaacattgacacgtggcacttttctttaacatatgttgatgtttcactaacataaca |
373 |
Q |
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| |||||||||||| |||||| |||| || | |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
11450775 |
agcttttctatctccaaatttagttcctaccttcaactccctttaacattgacacgtggcacctttctttaacataggttgatgtttcactaacataaca |
11450874 |
T |
|
| Q |
374 |
catgacaannnnnnnaatnnnnnnntaacgcatgacaattttatattgatatgagatatttgcatggttattattttaacattgatgaa |
462 |
Q |
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|||||||| ||| |||||||||||||||||||| |||||| | |||||| || |||||||||||||| |||||||| |
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| T |
11450875 |
catgacaatttttttaataaaaaaataacgcatgacaattttata-tgatatcacatattttaatagttattattttaactttgatgaa |
11450962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 11450106 - 11450187
Alignment:
| Q |
9 |
gaaatgggcttgaatccattgatatttattaactagggcca---tattaaaactaattttgataattcttaacataattagt |
87 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11450106 |
gaaatgagcttgaatccattgatatttattaactaaggccatattattaaaactaattttgataattcttaacataattagt |
11450187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 772 - 844
Target Start/End: Complemental strand, 28148129 - 28148057
Alignment:
| Q |
772 |
tgtcaaaatgggccaagcccaccggactggcccttcggccgtctattttaatgtgggccggaccgtaaaaaag |
844 |
Q |
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|||||||||||| || ||||| ||| ||||||||| || | ||||||||| ||||||| |||||||||||||| |
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| T |
28148129 |
tgtcaaaatgggtcaggcccatcgggctggccctttggtcctctattttagtgtgggctggaccgtaaaaaag |
28148057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 775 - 895
Target Start/End: Complemental strand, 41535229 - 41535107
Alignment:
| Q |
775 |
caaaatgggccaagcccaccggactggcccttcggccgtctattttaatgtgggccggaccgtaaaaaa-gtatgaaaaagtgatcctatc-ttttgggc |
872 |
Q |
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||||||||| || ||||||||| |||||||||||||| ||||||||| ||||||| || ||| |||||| | || |||| ||| |||||| |||||||| |
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| T |
41535229 |
caaaatgggtcaggcccaccgggctggcccttcggccctctattttagtgtgggctgggccggaaaaaaggcataaaaatatgaacctatctttttgggc |
41535130 |
T |
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| Q |
873 |
cagcccatcgggcctgtatttta |
895 |
Q |
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||| |||||||||||| |||||| |
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| T |
41535129 |
cagtccatcgggcctgcatttta |
41535107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 766 - 895
Target Start/End: Complemental strand, 30391903 - 30391771
Alignment:
| Q |
766 |
tagagatgtcaaaatgggccaagcccaccggactggcccttcggccgtctattttaatgtgggccggaccgtaaaaaa-gtatgaaaaagtgatcctatc |
864 |
Q |
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||||| ||||||||||| || ||||||||| |||||||||||||| | |||||| |||||| ||| |||||||||| | |||||||| |||||||| |
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| T |
30391903 |
tagagctgtcaaaatggatcaggcccaccgggctggcccttcggccctttatttttgtgtgggtcgggccgtaaaaaaggcatgaaaaaacaatcctatc |
30391804 |
T |
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| Q |
865 |
--ttttgggccagcccatcgggcctgtatttta |
895 |
Q |
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||||||||||||||||| |||||| |||||| |
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| T |
30391803 |
atttttgggccagcccatcaggcctgcatttta |
30391771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 765 - 895
Target Start/End: Complemental strand, 29860637 - 29860504
Alignment:
| Q |
765 |
gtagagatgtcaaaatgggccaagcccaccggactggcccttcggccgtctattttaatgtgggccggaccg-taaaaaagtatg-aaaaagtgatccta |
862 |
Q |
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|||||| ||||||||||||||| ||||||| | ||||||||| |||| | ||||||| ||||||| || ||| | |||| ||||| ||||| || |||| |
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| T |
29860637 |
gtagagctgtcaaaatgggccaggcccaccaggctggccctttggccctttattttactgtgggctgggccgtttaaaaggtatgaaaaaaacgacccta |
29860538 |
T |
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| Q |
863 |
tc-ttttgggccagcccatcgggcctgtatttta |
895 |
Q |
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|| ||||||||||||||||| ||||| |||||| |
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| T |
29860537 |
tctttttgggccagcccatcaagcctgcatttta |
29860504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 766 - 842
Target Start/End: Complemental strand, 17272668 - 17272592
Alignment:
| Q |
766 |
tagagatgtcaaaatgggccaagcccaccggactggcccttcggccgtctattttaatgtgggccggaccgtaaaaa |
842 |
Q |
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||||| ||||||||||| || |||||||| | ||||||||||||| ||||||||| |||||| ||| ||||||||| |
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| T |
17272668 |
tagagctgtcaaaatggatcaggcccaccgaattggcccttcggccctctattttattgtgggtcgggccgtaaaaa |
17272592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 766 - 887
Target Start/End: Complemental strand, 16462600 - 16462477
Alignment:
| Q |
766 |
tagagatgtcaaaatgggccaagcccaccggactggcccttcggccgtctattttaatgtgggccggaccgtaaaaaag-tatgaaaaagtgatcctatc |
864 |
Q |
| |
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||||| ||||||||||| || ||||| | ||||||||||||| ||||||||| |||||| ||| ||||||||||| |||||||| || |||||| |
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| T |
16462600 |
tagagttgtcaaaatggatcaggcccatcatactggcccttcggatctctattttagtgtgggtcgggccgtaaaaaagacatgaaaaaacgaccctatc |
16462501 |
T |
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| Q |
865 |
-ttttgggccagcccatcgggcct |
887 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
16462500 |
tttttggaccagcccatcgggcct |
16462477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 766 - 852
Target Start/End: Complemental strand, 47341042 - 47340955
Alignment:
| Q |
766 |
tagagatgtcaaaatgggccaagcccaccggactggcccttcggccgtctattttaatgtgggccggaccgt-aaaaaagtatgaaaa |
852 |
Q |
| |
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||||| ||||||||||| || ||||||||| |||||||| |||| ||||||||| |||||| ||| |||| ||||||||||||||| |
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| T |
47341042 |
tagagctgtcaaaatggcacaggcccaccgggctggccctctggccctctattttagtgtgggtcgggccgtaaaaaaagtatgaaaa |
47340955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 800 - 895
Target Start/End: Complemental strand, 28156546 - 28156448
Alignment:
| Q |
800 |
ggcccttcggccgtctattttaatgtgggccggaccgtaaaaaagt-atgaaaa-agtgatcctatctttt-gggccagcccatcgggcctgtatttta |
895 |
Q |
| |
|
||||| |||||| ||| ||||| |||||||||| ||||||||||| ||||||| | || |||||||||| |||||||||||||||||||| |||||| |
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| T |
28156546 |
ggcccatcggccctctgttttagtgtgggccgggccgtaaaaaaggcatgaaaacaacgaccctatctttttgggccagcccatcgggcctgcatttta |
28156448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 765 - 895
Target Start/End: Original strand, 22764006 - 22764130
Alignment:
| Q |
765 |
gtagagatgtcaaaatgggccaagcccaccggactggcccttcggccgtctattttaatgtgggccggaccgtaaaaaa-gtatgaaaaagtgatcctat |
863 |
Q |
| |
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|||||| |||||||||||| || | ||| ||||||||||||| ||||||| ||||| ||||||||||||||| | |||||||| | |||| |
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|
| T |
22764006 |
gtagagttgtcaaaatgggtcaggtccatcggactggccctt--------tattttagtgtggtccggaccgtaaaaaaggcatgaaaaaacaaccctaa |
22764097 |
T |
|
| Q |
864 |
c-ttttgggccagcccatcgggcctgtatttta |
895 |
Q |
| |
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| |||||||||||||||||||||||| |||||| |
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| T |
22764098 |
ctttttgggccagcccatcgggcctgcatttta |
22764130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 815 - 895
Target Start/End: Original strand, 56564039 - 56564121
Alignment:
| Q |
815 |
tattttaatgtgggccggaccgtaaaaaagt-atgaaaaagtgatcctatctttt-gggccagcccatcgggcctgtatttta |
895 |
Q |
| |
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||||||| |||||||||| ||||||||||| |||||||| || |||||||||| |||||||| ||||||||||| |||||| |
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| T |
56564039 |
tattttagtgtgggccgggccgtaaaaaagccatgaaaaaacgaccctatctttttgggccagctcatcgggcctgcatttta |
56564121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 866 - 895
Target Start/End: Complemental strand, 11686723 - 11686694
Alignment:
| Q |
866 |
tttgggccagcccatcgggcctgtatttta |
895 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
11686723 |
tttgggccagcccatcgggcctgtatttta |
11686694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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