View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5862-Insertion-4 (Length: 658)

Name: NF5862-Insertion-4
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5862-Insertion-4
NF5862-Insertion-4
[»] chr4 (1 HSPs)
chr4 (98-658)||(40858729-40859315)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 98 - 658
Target Start/End: Complemental strand, 40859315 - 40858729
Alignment:
Q  98 cttatttttcattgccaatcaaaacataataatattta-------ccaatttcccctttgtttgttagtcattttgtcaaattttgaataaaattaaatt 190  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40859315 cttatttttcattgccaatcaaaacataataatatttaatatttaccaatttcccctttgtttgttagtcattttgtcaaattttgaacaaaattaaatt 40859216  T
Q  191 ttgcatgcaatgttggaccacgacagcgttgatgacattcatacacattgaaggatattaggaataagtgttagagaatttttgtatggtcacaaaacaa 290  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||||    
T  40859215 ttgcatgcaatgttgaaccacgacagcgttgatgacattcatacacattgaaggatattaggaataagcgttacataatttttgtatggtcactaaacaa 40859116  T
Q  291 aatgcatagtgtctaggtacatacgcaaaagacatttttctaaagtaaaaagaaaaagaatgatcttatatttcagagaaatgtatctctttatgcgtat 390  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  40859115 aatgcatagtgtctaggcacatacgcaaaagac-tttttctaaagtaaaaagaaaaagaatgattttatatttcagagatatgtatctctttatgcgtat 40859017  T
Q  391 acatttaatcctgtgatcatgcaagatttgttcgaagaataatgtggtctatctaactatgtaagggg--------------------acaaactacatg 470  Q
    ||||||| || ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||                    ||||||||||||    
T  40859016 acatttactcatgtgatcatgcaagatttgttggaagaataacgtggtctatctaactatgtaaggggacaattccatcattaaaggaacaaactacatg 40858917  T
Q  471 gtaaattcatcaaagatgagttgttctagatcacaacctttgttttatctcctaagcatgatatgactataaatagtggctcttcaagatcactttatac 570  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40858916 gtgaattcatcaaagatgagttgttctagatcacaacctttattttatctcctaagcatgatatgactataaatagtggctcttcaagatcactttatac 40858817  T
Q  571 agccgttgattatagatgtgagatgttttatctcctgaagtacatgatatgatttgaagtggtagctcttcagaatcactttctaacg 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40858816 agccgttgattatagatgtgagatgttttatctcctgaagtacatgatatgatttgaagtggtagctcttcagaatcactttctaacg 40858729  T

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